Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010188

Physical Location & Seq

Genomic Coordinates Forward (+)

29240035 .. 29241066

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00307750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGGATTGGTAATGAGTTCCATGTCCCTAGGGTCCGCAAAGATGATCGATTATGTAATGGGACCGGTGTACGAAAACTTTATACAGAAACCAGTTACAGACTTTGACGAGTTTCATGCTGCCATGCTTGGTGTTTGCAGGATTACCACATTAAAGCATCTAATTCTTGCCACTAACACAATCATATCCAGCGCTTTAAATGCTGCTATGCCTGGTAAACACTACAATGCCCCCGGACTGGAGGAAGTAAAGGATTTATACAAAAAATGGAATGATGCCCTGACTGATGAAGAAAAGAAGAAGGCATTCATCAAATTTATGGAGGATAATGTGAAAGTTAACCAAGCTGATACCGCTACCTGGTTGACAGGAGTACTAGCGCCTCCAGCGGCCATGGCTGCTAAAAAAGCTGGGGAGAGTTTTCCCCGGCTGAAAATGATCAAGAACGTCCCGGACGTCCTTTTCGTGCCGTCAGCAACAGTAGTAGCACTCATTACTGTAAGGTTCTCCAAAAGACTTTTTATGCAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

19.57

Weight (kDa)

9.12

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37445 AT4G37445
fragaria_vesca	FvH4_7g09940 FvH4_7g09940 FvH4_7g09940
malus_domestica	MD07G1104600.v1.1 MD07G1105300.v1.1
prunus_persica	Prupe.2G128200_v2.0.a1 Prupe.2G128200_v2.0.a1
pyrus_communis	pycom07g09050
rosa_chinensis	RchiOBHm_Chr1g0347501 RchiOBHm_Chr1g0347531
rosa_multiflora	Rmu_ssc0000280.1_g000004
rosa_roxburghii	Rroxscaffold_4G00307750
rosa_rugosa	Rorug01G0187400
rosa_samantha	Rh1AG204600 Rh1BG170400 Rh1CG189700 Rh1DG200700
rosa_wichuraiana	Rw0G013620 Rw1G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	459
AciI	CCGC	3 cut(s)	36, 354, 389
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	1 cut(s)	314
AcyI	GRCGYC	1 cut(s)	456
AfaI	GTAC	2 cut(s)	71, 375
AfeI	AGCGCT	1 cut(s)	193
AfiI	CCNNNNNNNGG	2 cut(s)	238, 360
AgeI	ACCGGT	1 cut(s)	64
AjnI	CCWGG	2 cut(s)	211, 359
AluBI	AGCT	2 cut(s)	347, 410
AluI	AGCT	2 cut(s)	347, 410
Aor51HI	AGCGCT	1 cut(s)	193
AoxI	GGCC	1 cut(s)	390
ApeKI	GCWGC	3 cut(s)	119, 203, 398
ApoI	RAATTY	1 cut(s)	314
ArsI	GACNNNNNNTTYG	2 cut(s)	446, 478
AsiGI	ACCGGT	1 cut(s)	64
Asp700I	GAANNNNTTC	1 cut(s)	305
AspA2I	CCTAGG	1 cut(s)	28
AspLEI	GCGC	2 cut(s)	194, 382
AspS9I	GGNCC	2 cut(s)	33, 62
AsuC2I	CCSGG	3 cut(s)	234, 427, 452
AvaII	GGWCC	2 cut(s)	33, 62
AvrII	CCTAGG	1 cut(s)	28
BbvI	GCAGC	3 cut(s)	106, 190, 385
BceAI	ACGGC	1 cut(s)	454
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BciT130I	CCWGG	2 cut(s)	213, 361
BclI	TGATCA	1 cut(s)	438
BcnI	CCSGG	3 cut(s)	234, 427, 452
BfaI	CTAG	3 cut(s)	29, 377, 532
BfoI	RGCGCY	2 cut(s)	195, 383
BisI	GCNGC	4 cut(s)	120, 204, 390, 399
BlnI	CCTAGG	1 cut(s)	28
BlsI	GCNGC	4 cut(s)	121, 205, 391, 400
BmcAI	AGTACT	1 cut(s)	375
Bme1390I	CCNGG	5 cut(s)	213, 234, 361, 427, 452
Bme18I	GGWCC	2 cut(s)	33, 62
BmgT120I	GGNCC	2 cut(s)	33, 62
BmiI	GGNNCC	2 cut(s)	34, 63
BmrFI	CCNGG	5 cut(s)	213, 234, 361, 427, 452
BmsI	GCATC	2 cut(s)	166, 265
BpmI	CTGGAG	2 cut(s)	260, 369
BpuMI	CCSGG	3 cut(s)	234, 427, 452
Bsa29I	ATCGAT	1 cut(s)	48
BsaHI	GRCGYC	1 cut(s)	456
BsaJI	CCNNGG	4 cut(s)	28, 232, 393, 425
BsaWI	WCCGGW	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 360
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	2 cut(s)	92, 243
BseBI	CCWGG	2 cut(s)	213, 361
BseCI	ATCGAT	1 cut(s)	48
BseDI	CCNNGG	4 cut(s)	28, 232, 393, 425
BseLI	CCNNNNNNNGG	2 cut(s)	238, 360
BseNI	ACTGG	2 cut(s)	92, 243
BseXI	GCAGC	3 cut(s)	106, 190, 385
BseYI	CCCAGC	1 cut(s)	410
BshFI	GGCC	1 cut(s)	392
BshTI	ACCGGT	1 cut(s)	64
BshVI	ATCGAT	1 cut(s)	48
BsiSI	CCGG	4 cut(s)	65, 234, 427, 452
BslFI	GGGAC	3 cut(s)	10, 75, 434
BslI	CCNNNNNNNGG	2 cut(s)	238, 360
BsmFI	GGGAC	3 cut(s)	10, 75, 434
BsmI	GAATGC	1 cut(s)	305
BsnI	GGCC	1 cut(s)	392
Bsp143I	GATC	2 cut(s)	45, 438
Bsp19I	CCATGG	1 cut(s)	393
BspACI	CCGC	3 cut(s)	36, 354, 389
BspANI	GGCC	1 cut(s)	392
BspDI	ATCGAT	1 cut(s)	48
BspLI	GGNNCC	2 cut(s)	34, 63
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	92, 243
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	4 cut(s)	28, 232, 393, 425
BssMI	GATC	2 cut(s)	45, 438
BssNI	GRCGYC	1 cut(s)	456
BssT1I	CCWWGG	2 cut(s)	28, 393
Bst2UI	CCWGG	2 cut(s)	213, 361
Bst4CI	ACNGT	2 cut(s)	481, 499
BstACI	GRCGYC	1 cut(s)	456
BstDSI	CCRYGG	1 cut(s)	393
BstH2I	RGCGCY	2 cut(s)	195, 383
BstHHI	GCGC	2 cut(s)	194, 382
BstKTI	GATC	2 cut(s)	48, 441
BstMBI	GATC	2 cut(s)	45, 438
BstMWI	GCNNNNNNNGC	6 cut(s)	200, 353, 386, 395, 398, 407
BstNI	CCWGG	2 cut(s)	213, 361
BstSCI	CCNGG	5 cut(s)	211, 232, 359, 425, 450
BstV1I	GCAGC	3 cut(s)	106, 190, 385
Bsu15I	ATCGAT	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	392
BsuTUI	ATCGAT	1 cut(s)	48
BtgI	CCRYGG	1 cut(s)	393
CfoI	GCGC	2 cut(s)	194, 382
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	33, 62
ClaI	ATCGAT	1 cut(s)	48
CsiI	ACCWGGT	1 cut(s)	359
Csp6I	GTAC	2 cut(s)	70, 374
CspAI	ACCGGT	1 cut(s)	64
CviAII	CATG	4 cut(s)	22, 116, 124, 394
CviJI	RGCY	5 cut(s)	347, 392, 398, 410, 430
CviKI_1	RGCY	5 cut(s)	347, 392, 398, 410, 430
CviQI	GTAC	2 cut(s)	70, 374
DpnI	GATC	2 cut(s)	47, 440
DpnII	GATC	2 cut(s)	45, 438
DraI	TTTAAA	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	390
Eco130I	CCWWGG	2 cut(s)	28, 393
Eco47I	GGWCC	2 cut(s)	33, 62
Eco47III	AGCGCT	1 cut(s)	193
EcoRII	CCWGG	2 cut(s)	211, 359
EcoT14I	CCWWGG	2 cut(s)	28, 393
ErhI	CCWWGG	2 cut(s)	28, 393
FaeI	CATG	4 cut(s)	25, 119, 127, 397
FaqI	GGGAC	3 cut(s)	10, 75, 434
FatI	CATG	4 cut(s)	21, 115, 123, 393
FbaI	TGATCA	1 cut(s)	438
Fnu4HI	GCNGC	4 cut(s)	120, 204, 390, 399
Fsp4HI	GCNGC	4 cut(s)	120, 204, 390, 399
FspBI	CTAG	3 cut(s)	29, 377, 532
GlaI	GCGC	2 cut(s)	193, 381
GluI	GCNGC	4 cut(s)	120, 204, 390, 399
GsaI	CCCAGC	1 cut(s)	414
GsuI	CTGGAG	2 cut(s)	260, 369
HaeII	RGCGCY	2 cut(s)	195, 383
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	4 cut(s)	65, 234, 427, 452
HhaI	GCGC	2 cut(s)	194, 382
Hin1I	GRCGYC	1 cut(s)	456
Hin1II	CATG	4 cut(s)	25, 119, 127, 397
Hin6I	GCGC	2 cut(s)	192, 380
HinP1I	GCGC	2 cut(s)	192, 380
HincII	GTYRAC	2 cut(s)	340, 366
HindII	GTYRAC	2 cut(s)	340, 366
HpaI	GTTAAC	1 cut(s)	340
HpaII	CCGG	4 cut(s)	65, 234, 427, 452
Hpy166II	GTNNAC	4 cut(s)	70, 218, 340, 366
Hpy188III	TCNNGA	1 cut(s)	442
Hpy8I	GTNNAC	4 cut(s)	70, 218, 340, 366
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	2 cut(s)	481, 499
HpyCH4IV	ACGT	2 cut(s)	447, 456
HpyCH4V	TGCA	2 cut(s)	138, 526
HpyF10VI	GCNNNNNNNGC	6 cut(s)	200, 353, 386, 395, 398, 407
HpySE526I	ACGT	2 cut(s)	447, 456
Hsp92I	GRCGYC	1 cut(s)	456
Hsp92II	CATG	4 cut(s)	25, 119, 127, 397
HspAI	GCGC	2 cut(s)	192, 380
Ksp22I	TGATCA	1 cut(s)	438
KspAI	GTTAAC	1 cut(s)	340
Kzo9I	GATC	2 cut(s)	45, 438
Lsp1109I	GCAGC	3 cut(s)	106, 190, 385
LweI	GCATC	2 cut(s)	166, 265
MabI	ACCWGGT	1 cut(s)	359
MaeI	CTAG	3 cut(s)	29, 377, 532
MaeII	ACGT	2 cut(s)	447, 456
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	2 cut(s)	47, 440
MboI	GATC	2 cut(s)	45, 438
MboII	GAAGA	2 cut(s)	302, 310
MluCI	AATT	2 cut(s)	162, 314
MnlI	CCTC	3 cut(s)	235, 316, 393
MroXI	GAANNNNTTC	1 cut(s)	305
MseI	TTAA	3 cut(s)	152, 197, 339
MslI	CAYNNNNRTG	1 cut(s)	225
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	4 cut(s)	65, 234, 427, 452
MspR9I	CCNGG	5 cut(s)	213, 234, 361, 427, 452
Mva1269I	GAATGC	1 cut(s)	305
MvaI	CCWGG	2 cut(s)	213, 361
MwoI	GCNNNNNNNGC	6 cut(s)	200, 353, 386, 395, 398, 407
NciI	CCSGG	3 cut(s)	234, 427, 452
NcoI	CCATGG	1 cut(s)	393
NdeII	GATC	2 cut(s)	45, 438
NlaIII	CATG	4 cut(s)	25, 119, 127, 397
NlaIV	GGNNCC	2 cut(s)	34, 63
PcsI	WCGNNNNNNNCGW	2 cut(s)	453, 462
PctI	GAATGC	1 cut(s)	305
PdmI	GAANNNNTTC	1 cut(s)	305
PfoI	TCCNGGA	1 cut(s)	450
PinAI	ACCGGT	1 cut(s)	64
PkrI	GCNGC	4 cut(s)	121, 205, 391, 400
Psp6I	CCWGG	2 cut(s)	211, 359
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	2 cut(s)	211, 359
PspN4I	GGNNCC	2 cut(s)	34, 63
PspPI	GGNCC	2 cut(s)	33, 62
RsaI	GTAC	2 cut(s)	71, 375
RsaNI	GTAC	2 cut(s)	70, 374
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	3 cut(s)	152, 197, 339
SatI	GCNGC	4 cut(s)	120, 204, 390, 399
Sau3AI	GATC	2 cut(s)	45, 438
Sau96I	GGNCC	2 cut(s)	33, 62
ScaI	AGTACT	1 cut(s)	375
ScrFI	CCNGG	5 cut(s)	213, 234, 361, 427, 452
SetI	ASST	6 cut(s)	349, 362, 412, 450, 459, 506
SexAI	ACCWGGT	1 cut(s)	359
SfaNI	GCATC	2 cut(s)	166, 265
SinI	GGWCC	2 cut(s)	33, 62
SmiMI	CAYNNNNRTG	1 cut(s)	225
Sse9I	AATT	2 cut(s)	162, 314
SsiI	CCGC	3 cut(s)	36, 354, 389
SspMI	CTAG	3 cut(s)	29, 377, 532
StyD4I	CCNGG	5 cut(s)	211, 232, 359, 425, 450
StyI	CCWWGG	2 cut(s)	28, 393
TaaI	ACNGT	2 cut(s)	481, 499
TaiI	ACGT	2 cut(s)	450, 459
TaqI	TCGA	1 cut(s)	48
TasI	AATT	2 cut(s)	162, 314
TatI	WGTACW	1 cut(s)	373
TauI	GCSGC	1 cut(s)	392
Tru1I	TTAA	3 cut(s)	152, 197, 339
Tru9I	TTAA	3 cut(s)	152, 197, 339
TseI	GCWGC	3 cut(s)	119, 203, 398
TspDTI	ATGAA	3 cut(s)	104, 298, 303
VpaK11BI	GGWCC	2 cut(s)	33, 62
XapI	RAATTY	1 cut(s)	314
XmaJI	CCTAGG	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	305
XspI	CTAG	3 cut(s)	29, 377, 532
ZraI	GACGTC	1 cut(s)	457
ZrmI	AGTACT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.