Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0010188

Physical Location & Seq

Genomic Coordinates Reverse (-)

38813963 .. 38818131

Gene Structure 4169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG204600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGATTGGTAATGAGTTCCATGTCCCTAGGGTCCGCAAAGATGATCAATTATGCAATGGAACCGGTGTACGACAAGTTTATAAAGGAGCCAGTTACAGAGTTTGACGAGTTTCACGCTGCCATGCTTGGTGTTTGCAGCGCTTTAAATGCTGCTATGCCCGGTAAACACTACAATGCGCCCGGACTGGAGGAAGTAAAGGTTTTTTACGGAGAATGGAAACAAGCTGACCTGCCTGAAAAAAAGAGGCTGCTATTCACCGACTTTATGAAAAATAATGTGAAAATTAACCAGGCTGATACCGCTACCTTGTTGACAGGAGTACTAGCGCCTCCAGCGGCCATGGCTGCTAAAAAAGCTGGGGAGAGTCTTCCCCAGCTGAAAATGATCAAGAACGTCCCAGACGTCCTTTTCGTGCCAACGGCAACAGTAGTAGCACTCATTACCGTAAGGTTCTCCAAAAGACTTTTCATGCGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

17.66

Weight (kDa)

9.16

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37445 AT4G37445
fragaria_vesca	FvH4_7g09940 FvH4_7g09940 FvH4_7g09940
malus_domestica	MD07G1104600.v1.1 MD07G1105300.v1.1
prunus_persica	Prupe.2G128200_v2.0.a1 Prupe.2G128200_v2.0.a1
pyrus_communis	pycom07g09050
rosa_chinensis	RchiOBHm_Chr1g0347501 RchiOBHm_Chr1g0347531
rosa_multiflora	Rmu_ssc0000280.1_g000004
rosa_roxburghii	Rroxscaffold_4G00307750
rosa_rugosa	Rorug01G0187400
rosa_samantha	Rh1AG204600 Rh1BG170400 Rh1CG189700 Rh1DG200700
rosa_wichuraiana	Rw0G013620 Rw1G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	83
AatII	GACGTC	1 cut(s)	408
Acc36I	ACCTGC	1 cut(s)	240
AciI	CCGC	3 cut(s)	36, 303, 338
AcoI	YGGCCR	1 cut(s)	339
AcyI	GRCGYC	1 cut(s)	405
AfaI	GTAC	2 cut(s)	71, 324
AfeI	AGCGCT	1 cut(s)	142
AgeI	ACCGGT	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	291
AjuI	GAANNNNNNNTTGG	1 cut(s)	452
AluBI	AGCT	3 cut(s)	227, 359, 379
AluI	AGCT	3 cut(s)	227, 359, 379
Aor51HI	AGCGCT	1 cut(s)	142
AoxI	GGCC	1 cut(s)	339
ApeKI	GCWGC	5 cut(s)	119, 138, 152, 250, 347
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
AsiGI	ACCGGT	1 cut(s)	64
AspA2I	CCTAGG	1 cut(s)	28
AspLEI	GCGC	3 cut(s)	143, 181, 331
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	2 cut(s)	162, 183
AsuHPI	GGTGA	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	33
AvrII	CCTAGG	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	362
BbvI	GCAGC	5 cut(s)	106, 139, 150, 237, 334
BceAI	ACGGC	1 cut(s)	438
BciT130I	CCWGG	1 cut(s)	293
BclI	TGATCA	2 cut(s)	45, 387
BcnI	CCSGG	2 cut(s)	162, 183
BfaI	CTAG	3 cut(s)	29, 326, 481
BfoI	RGCGCY	2 cut(s)	144, 332
BfuAI	ACCTGC	1 cut(s)	240
BisI	GCNGC	6 cut(s)	120, 139, 153, 251, 339, 348
BlnI	CCTAGG	1 cut(s)	28
BlsI	GCNGC	6 cut(s)	121, 140, 154, 252, 340, 349
BmcAI	AGTACT	1 cut(s)	324
Bme1390I	CCNGG	3 cut(s)	162, 183, 293
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	3 cut(s)	34, 63, 90
BmrFI	CCNGG	3 cut(s)	162, 183, 293
BpiI	GAAGAC	1 cut(s)	362
BpmI	CTGGAG	2 cut(s)	209, 318
BpuMI	CCSGG	2 cut(s)	162, 183
BsaHI	GRCGYC	1 cut(s)	405
BsaJI	CCNNGG	2 cut(s)	28, 342
BsaWI	WCCGGW	1 cut(s)	64
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	2 cut(s)	92, 192
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	2 cut(s)	28, 342
BseMI	GCAATG	1 cut(s)	63
BseNI	ACTGG	2 cut(s)	92, 192
BseXI	GCAGC	5 cut(s)	106, 139, 150, 237, 334
BseYI	CCCAGC	2 cut(s)	359, 375
BshFI	GGCC	1 cut(s)	341
BshTI	ACCGGT	1 cut(s)	64
BsiSI	CCGG	3 cut(s)	65, 162, 183
BslFI	GGGAC	2 cut(s)	10, 383
BsmFI	GGGAC	2 cut(s)	10, 383
BsnI	GGCC	1 cut(s)	341
Bsp143I	GATC	2 cut(s)	45, 387
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	3 cut(s)	36, 303, 338
BspANI	GGCC	1 cut(s)	341
BspLI	GGNNCC	3 cut(s)	34, 63, 90
BspMI	ACCTGC	1 cut(s)	240
BsrDI	GCAATG	1 cut(s)	63
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	92, 192
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	28, 342
BssMI	GATC	2 cut(s)	45, 387
BssNI	GRCGYC	1 cut(s)	405
BssT1I	CCWWGG	2 cut(s)	28, 342
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	2 cut(s)	430, 448
BstACI	GRCGYC	1 cut(s)	405
BstDSI	CCRYGG	1 cut(s)	342
BstH2I	RGCGCY	2 cut(s)	144, 332
BstHHI	GCGC	3 cut(s)	143, 181, 331
BstKTI	GATC	2 cut(s)	48, 390
BstMBI	GATC	2 cut(s)	45, 387
BstMWI	GCNNNNNNNGC	6 cut(s)	149, 302, 335, 344, 347, 356
BstNI	CCWGG	1 cut(s)	293
BstSCI	CCNGG	3 cut(s)	160, 181, 291
BstV1I	GCAGC	5 cut(s)	106, 139, 150, 237, 334
BstV2I	GAAGAC	1 cut(s)	362
BsuRI	GGCC	1 cut(s)	341
BtgI	CCRYGG	1 cut(s)	342
BveI	ACCTGC	1 cut(s)	240
CfoI	GCGC	3 cut(s)	143, 181, 331
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	70, 323
CspAI	ACCGGT	1 cut(s)	64
CviAII	CATG	4 cut(s)	22, 124, 343, 472
CviJI	RGCY	8 cut(s)	91, 227, 250, 296, 341, 347, 359, 379
CviKI_1	RGCY	8 cut(s)	91, 227, 250, 296, 341, 347, 359, 379
CviQI	GTAC	2 cut(s)	70, 323
DpnI	GATC	2 cut(s)	47, 389
DpnII	GATC	2 cut(s)	45, 387
DraI	TTTAAA	1 cut(s)	147
EaeI	YGGCCR	1 cut(s)	339
Eco130I	CCWWGG	2 cut(s)	28, 342
Eco47I	GGWCC	1 cut(s)	33
Eco47III	AGCGCT	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	291
EcoT14I	CCWWGG	2 cut(s)	28, 342
ErhI	CCWWGG	2 cut(s)	28, 342
FaeI	CATG	4 cut(s)	25, 127, 346, 475
FaiI	YATR	8 cut(s)	23, 54, 83, 125, 158, 269, 344, 473
FaqI	GGGAC	2 cut(s)	10, 383
FatI	CATG	4 cut(s)	21, 123, 342, 471
FbaI	TGATCA	2 cut(s)	45, 387
Fnu4HI	GCNGC	6 cut(s)	120, 139, 153, 251, 339, 348
Fsp4HI	GCNGC	6 cut(s)	120, 139, 153, 251, 339, 348
FspBI	CTAG	3 cut(s)	29, 326, 481
GlaI	GCGC	3 cut(s)	142, 180, 330
GluI	GCNGC	6 cut(s)	120, 139, 153, 251, 339, 348
GsaI	CCCAGC	2 cut(s)	363, 379
GsuI	CTGGAG	2 cut(s)	209, 318
HaeII	RGCGCY	2 cut(s)	144, 332
HaeIII	GGCC	1 cut(s)	341
HapII	CCGG	3 cut(s)	65, 162, 183
HhaI	GCGC	3 cut(s)	143, 181, 331
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	4 cut(s)	25, 127, 346, 475
Hin6I	GCGC	3 cut(s)	141, 179, 329
HinP1I	GCGC	3 cut(s)	141, 179, 329
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HinfI	GANTC	1 cut(s)	367
HpaII	CCGG	3 cut(s)	65, 162, 183
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	3 cut(s)	70, 167, 315
Hpy188III	TCNNGA	1 cut(s)	391
Hpy8I	GTNNAC	3 cut(s)	70, 167, 315
HpyCH4III	ACNGT	2 cut(s)	430, 448
HpyCH4IV	ACGT	2 cut(s)	396, 405
HpyCH4V	TGCA	2 cut(s)	56, 138
HpyF10VI	GCNNNNNNNGC	6 cut(s)	149, 302, 335, 344, 347, 356
HpySE526I	ACGT	2 cut(s)	396, 405
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	4 cut(s)	25, 127, 346, 475
HspAI	GCGC	3 cut(s)	141, 179, 329
Ksp22I	TGATCA	2 cut(s)	45, 387
Kzo9I	GATC	2 cut(s)	45, 387
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	5 cut(s)	106, 139, 150, 237, 334
MaeI	CTAG	3 cut(s)	29, 326, 481
MaeII	ACGT	2 cut(s)	396, 405
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	2 cut(s)	47, 389
MboI	GATC	2 cut(s)	45, 387
MboII	GAAGA	1 cut(s)	362
MluCI	AATT	2 cut(s)	49, 285
MlyI	GAGTC	1 cut(s)	376
MnlI	CCTC	3 cut(s)	184, 240, 342
MseI	TTAA	2 cut(s)	146, 288
MslI	CAYNNNNRTG	1 cut(s)	174
MspA1I	CMGCKG	2 cut(s)	338, 379
MspI	CCGG	3 cut(s)	65, 162, 183
MspR9I	CCNGG	3 cut(s)	162, 183, 293
MvaI	CCWGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	6 cut(s)	149, 302, 335, 344, 347, 356
NciI	CCSGG	2 cut(s)	162, 183
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	2 cut(s)	45, 387
NlaIII	CATG	4 cut(s)	25, 127, 346, 475
NlaIV	GGNNCC	3 cut(s)	34, 63, 90
PcsI	WCGNNNNNNNCGW	2 cut(s)	402, 411
PinAI	ACCGGT	1 cut(s)	64
PkrI	GCNGC	6 cut(s)	121, 140, 154, 252, 340, 349
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
PsiI	TTATAA	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	291
PspFI	CCCAGC	2 cut(s)	359, 375
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	3 cut(s)	34, 63, 90
PspPI	GGNCC	1 cut(s)	33
PvuII	CAGCTG	1 cut(s)	379
RsaI	GTAC	2 cut(s)	71, 324
RsaNI	GTAC	2 cut(s)	70, 323
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	146, 288
SatI	GCNGC	6 cut(s)	120, 139, 153, 251, 339, 348
Sau3AI	GATC	2 cut(s)	45, 387
Sau96I	GGNCC	1 cut(s)	33
ScaI	AGTACT	1 cut(s)	324
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	3 cut(s)	162, 183, 293
SetI	ASST	9 cut(s)	204, 229, 234, 311, 361, 381, 399, 408, 455
SinI	GGWCC	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	174
Sse9I	AATT	2 cut(s)	49, 285
SsiI	CCGC	3 cut(s)	36, 303, 338
SspMI	CTAG	3 cut(s)	29, 326, 481
StyD4I	CCNGG	3 cut(s)	160, 181, 291
StyI	CCWWGG	2 cut(s)	28, 342
TaaI	ACNGT	2 cut(s)	430, 448
TaiI	ACGT	2 cut(s)	399, 408
TasI	AATT	2 cut(s)	49, 285
TatI	WGTACW	1 cut(s)	322
TauI	GCSGC	1 cut(s)	341
Tru1I	TTAA	2 cut(s)	146, 288
Tru9I	TTAA	2 cut(s)	146, 288
TseI	GCWGC	5 cut(s)	119, 138, 152, 250, 347
TspDTI	ATGAA	2 cut(s)	284, 460
TspGWI	ACGGA	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	33
XmaJI	CCTAGG	1 cut(s)	28
XspI	CTAG	3 cut(s)	29, 326, 481
ZraI	GACGTC	1 cut(s)	406
ZrmI	AGTACT	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.