Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013712

Physical Location & Seq

Genomic Coordinates Reverse (-)

10884847 .. 10885936

Gene Structure 1090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g11940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAGTTGGCTTCTGTACCTAGACCACTTGCTGTTCCTGTTCTACGTGTAGCAATCCCTTTTTTCCTCTTGATTTGCTTCTACGTATCTCTGTCAGTGTCTAAGCACCATAGTTTTCTCATATCCACCTACGAGTTCATCGTGATGGCAAAATCAAATCGCGAGATCATGTTCTTCATGCTCACTGGAGTTTCTATCACGATTAATATCGTGTTTGGGATCTTGAGGCCTCCCAGGGAAGATACTGATCATTATGTTCGGCTACATGAGTTGAAGGACTACACTGTTTTGGAGGTAAGTGATGAAGATTACTATTACTACTACCAATGTAGCGATTGCGATGAGGATGACAATGAGTGTGGTAAATCTGATGGTTATGATGAAGATAATGATGATGATGGTAGCGACGACGATGTAAACAGTGAAGATTTTTATGGTGAAGAGATAACTAGTGAAGAGTTGGAGAGGAGAGCTGAGGAATTCATAGCCAAGCACACAAGAAAATGGAGAGAGGAGTTCGTATACGAGAAGGTCGCATACATGACTGCTATAGAGTTTCAATCATCAAGCTCTATCCAACGCAAGGTGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

23.1

Weight (kDa)

4.47

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013712)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g11940
malus_domestica	MD02G1203500.v1.1 MD07G1122500.v1.1
pyrus_communis	pycom07g11080
rosa_laevigata	RLG00000028465 RLG00000028466 RLG00000034132
rosa_roxburghii	Rroxscaffold_4G00304650
rosa_rugosa	Rorug01G0212900
rosa_samantha	Rh1AG227100 Rh1BG196300 Rh1CG212100 Rh1DG224300 Rh5AG286800 Rh5CG323500
rosa_wichuraiana	Rw1G019640 Rw1G019670 Rw5G026640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	522
AccII	CGCG	1 cut(s)	162
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	1 cut(s)	479
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	1 cut(s)	583
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	2 cut(s)	274, 560
AhlI	ACTAGT	1 cut(s)	449
AjnI	CCWGG	1 cut(s)	233
AluBI	AGCT	2 cut(s)	473, 570
AluI	AGCT	2 cut(s)	473, 570
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	479
AseI	ATTAAT	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	449
BarI	GAAGNNNNNNTAC	2 cut(s)	521, 553
BbvCI	CCTCAGC	1 cut(s)	474
BccI	CCATC	3 cut(s)	139, 365, 392
BciT130I	CCWGG	1 cut(s)	235
BclI	TGATCA	1 cut(s)	247
BcuI	ACTAGT	1 cut(s)	449
BfaI	CTAG	2 cut(s)	21, 450
BfmI	CTRYAG	1 cut(s)	549
Bme1390I	CCNGG	1 cut(s)	235
BmrFI	CCNGG	1 cut(s)	235
BpmI	CTGGAG	1 cut(s)	207
Bpu10I	CCTNAGC	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	244
BsaAI	YACGTR	2 cut(s)	47, 85
BsaBI	GATNNNNATC	2 cut(s)	206, 246
BsaJI	CCNNGG	2 cut(s)	233, 234
Bsc4I	CCNNNNNNNGG	1 cut(s)	583
Bse1I	ACTGG	1 cut(s)	190
Bse8I	GATNNNNATC	2 cut(s)	206, 246
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	233, 234
BseGI	GGATG	1 cut(s)	352
BseJI	GATNNNNATC	2 cut(s)	206, 246
BseLI	CCNNNNNNNGG	1 cut(s)	583
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	2 cut(s)	481, 527
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	583
BsnI	GGCC	1 cut(s)	229
Bsp143I	GATC	3 cut(s)	165, 219, 247
Bsp68I	TCGCGA	1 cut(s)	162
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	1 cut(s)	466
BspFNI	CGCG	1 cut(s)	162
BspPI	GGATC	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	233, 234
BssMI	GATC	3 cut(s)	165, 219, 247
BssNAI	GTATAC	1 cut(s)	523
Bst1107I	GTATAC	1 cut(s)	523
Bst2UI	CCWGG	1 cut(s)	235
Bst4CI	ACNGT	2 cut(s)	286, 422
Bst6I	CTCTTC	2 cut(s)	435, 450
BstBAI	YACGTR	2 cut(s)	47, 85
BstDEI	CTNAG	2 cut(s)	102, 474
BstF5I	GGATG	1 cut(s)	352
BstFNI	CGCG	1 cut(s)	162
BstKTI	GATC	3 cut(s)	168, 222, 250
BstMBI	GATC	3 cut(s)	165, 219, 247
BstNI	CCWGG	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	233
BstSFI	CTRYAG	1 cut(s)	549
BstSNI	TACGTA	1 cut(s)	85
BstUI	CGCG	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BstZ17I	GTATAC	1 cut(s)	523
BsuRI	GGCC	1 cut(s)	229
BtgZI	GCGATG	1 cut(s)	354
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	4 cut(s)	102, 183, 282, 427
BtuMI	TCGCGA	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	17
CspCI	CAANNNNNGTGG	2 cut(s)	340, 375
CviAII	CATG	4 cut(s)	169, 178, 266, 541
CviJI	RGCY	6 cut(s)	11, 229, 262, 473, 488, 570
CviKI_1	RGCY	6 cut(s)	11, 229, 262, 473, 488, 570
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	2 cut(s)	102, 474
DpnI	GATC	3 cut(s)	167, 221, 249
DpnII	GATC	3 cut(s)	165, 219, 247
Eam1104I	CTCTTC	2 cut(s)	435, 450
EarI	CTCTTC	2 cut(s)	435, 450
Eco105I	TACGTA	1 cut(s)	85
Eco147I	AGGCCT	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	233
FaeI	CATG	4 cut(s)	172, 181, 269, 544
FatI	CATG	4 cut(s)	168, 177, 265, 540
FbaI	TGATCA	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	522
FokI	GGATG	1 cut(s)	359
FspBI	CTAG	2 cut(s)	21, 450
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	229
Hin1II	CATG	4 cut(s)	172, 181, 269, 544
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	2 cut(s)	418, 523
Hpy188I	TCNGA	1 cut(s)	370
Hpy188III	TCNNGA	5 cut(s)	70, 142, 161, 199, 223
Hpy8I	GTNNAC	2 cut(s)	418, 523
Hpy99I	CGWCG	2 cut(s)	410, 413
HpyAV	CCTTC	2 cut(s)	268, 523
HpyCH4III	ACNGT	2 cut(s)	286, 422
HpyCH4IV	ACGT	2 cut(s)	46, 84
HpyF3I	CTNAG	2 cut(s)	102, 474
HpySE526I	ACGT	2 cut(s)	46, 84
Hsp92II	CATG	4 cut(s)	172, 181, 269, 544
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	3 cut(s)	165, 219, 247
LpnPI	CCDG	4 cut(s)	51, 171, 220, 247
MaeI	CTAG	2 cut(s)	21, 450
MaeII	ACGT	2 cut(s)	46, 84
MalI	GATC	3 cut(s)	167, 221, 249
MboI	GATC	3 cut(s)	165, 219, 247
MboII	GAAGA	7 cut(s)	166, 251, 317, 395, 437, 452, 467
MflI	RGATCY	1 cut(s)	219
MluCI	AATT	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	441
MnlI	CCTC	8 cut(s)	77, 219, 240, 286, 337, 459, 469, 505
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	235
MvnI	CGCG	1 cut(s)	162
NdeII	GATC	3 cut(s)	165, 219, 247
NlaIII	CATG	4 cut(s)	172, 181, 269, 544
NruI	TCGCGA	1 cut(s)	162
PasI	CCCWGGG	1 cut(s)	234
PceI	AGGCCT	1 cut(s)	229
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
Ppu21I	YACGTR	2 cut(s)	47, 85
PshBI	ATTAAT	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	219
RruI	TCGCGA	1 cut(s)	162
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	204
Sau3AI	GATC	3 cut(s)	165, 219, 247
ScrFI	CCNGG	1 cut(s)	235
SetI	ASST	9 cut(s)	22, 49, 87, 131, 297, 475, 534, 572, 588
SfcI	CTRYAG	1 cut(s)	549
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
SnaBI	TACGTA	1 cut(s)	85
SpeI	ACTAGT	1 cut(s)	449
Sse9I	AATT	1 cut(s)	479
SseBI	AGGCCT	1 cut(s)	229
SspMI	CTAG	2 cut(s)	21, 450
StuI	AGGCCT	1 cut(s)	229
StyD4I	CCNGG	1 cut(s)	233
TaaI	ACNGT	2 cut(s)	286, 422
TaiI	ACGT	2 cut(s)	49, 87
TasI	AATT	1 cut(s)	479
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	4 cut(s)	102, 190, 289, 427
TspDTI	ATGAA	5 cut(s)	127, 166, 318, 396, 472
TspRI	CASTG	4 cut(s)	102, 190, 289, 427
VspI	ATTAAT	1 cut(s)	204
XapI	RAATTY	1 cut(s)	479
XmiI	GTMKAC	1 cut(s)	522
XspI	CTAG	2 cut(s)	21, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.