Rw1G019670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0013712
Physical Location & Seq
Reverse (-)
42900506 .. 42901081
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G019670.1

Sequence Viewer

Length: 576 bp
ATGAAGTTGGTTTCAGTACCTACACCACTTGTTTTTCACGTTTTACGTGTAGCAATCCCTTTTTTCCTCTTGGTTTGCTTCTACATATCTCTATCAGTTTCTAAGCACCATAGTTTTATTTTGTCCACCTACGAGTTTATGGTAGTGGCAAAATCAAATCGCGAGTTCGTGTTCTTCATGTTCGCTGTCGTTTCTATCACGATTAATATCGTGTTTGGGATTTTGATGCCTCCCAGGGAAGATGCTGATCATCATGTTCGGCTAGATGAAGTGAAAGACTATACTGTATTGAAGGTAAGTGATGAAGATTACTATTACTACTACAATTGTAGCGATTCCGATGAGGATAAAAATGAGTGCGGTTCTGATGGTTATGATGAAGATAATGATGACGATGGTAGCGATGACGATGTTAATAGTGAAGAGTTTTATGGTGAAGAGATTGATAGTGAAGAGTTGGAGAGGAGAGCTGAGGAATTCATAGCCAAGCACACAAGGAAATGGAGAGAGGATTTTGTATGCGAGAAGCTCCCGTACATGGCCTCTAAAGAGTTGCAATCATCAAGCTCTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

22.28

Weight (kDa)

4.43

Isoelectric Point (pI)

53.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 162
AciI CCGC 1 cut(s) 360
AcsI RAATTY 1 cut(s) 476
AfaI GTAC 2 cut(s) 18, 536
AfiI CCNNNNNNNGG 1 cut(s) 538
AflIII ACRYGT 1 cut(s) 46
AgsI TTSAA 1 cut(s) 292
AjnI CCWGG 1 cut(s) 233
AluBI AGCT 3 cut(s) 470, 529, 567
AluI AGCT 3 cut(s) 470, 529, 567
AoxI GGCC 1 cut(s) 540
ApoI RAATTY 1 cut(s) 476
AseI ATTAAT 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 446
BarI GAAGNNNNNNTAC 2 cut(s) 518, 550
BbvCI CCTCAGC 1 cut(s) 471
BccI CCATC 2 cut(s) 362, 389
BciT130I CCWGG 1 cut(s) 235
BclI TGATCA 1 cut(s) 247
BfaI CTAG 2 cut(s) 263, 574
Bme1390I CCNGG 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 235
BmsI GCATC 2 cut(s) 216, 232
Bpu10I CCTNAGC 1 cut(s) 471
BsaAI YACGTR 1 cut(s) 47
BsaBI GATNNNNATC 2 cut(s) 206, 246
BsaJI CCNNGG 2 cut(s) 233, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 538
Bse8I GATNNNNATC 2 cut(s) 206, 246
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 2 cut(s) 233, 234
BseJI GATNNNNATC 2 cut(s) 206, 246
BseLI CCNNNNNNNGG 1 cut(s) 538
BseMII CTCAG 1 cut(s) 462
BseRI GAGGAG 1 cut(s) 478
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 1 cut(s) 542
BslI CCNNNNNNNGG 1 cut(s) 538
BsnI GGCC 1 cut(s) 542
Bsp143I GATC 1 cut(s) 247
Bsp68I TCGCGA 1 cut(s) 162
BspACI CCGC 1 cut(s) 360
BspANI GGCC 1 cut(s) 542
BspCNI CTCAG 1 cut(s) 463
BspFNI CGCG 1 cut(s) 162
BssECI CCNNGG 2 cut(s) 233, 234
BssMI GATC 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 3 cut(s) 417, 432, 447
BstBAI YACGTR 1 cut(s) 47
BstDEI CTNAG 2 cut(s) 102, 471
BstFNI CGCG 1 cut(s) 162
BstKTI GATC 1 cut(s) 250
BstMBI GATC 1 cut(s) 247
BstNI CCWGG 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 233
BstUI CGCG 1 cut(s) 162
BsuRI GGCC 1 cut(s) 542
BtgZI GCGATG 1 cut(s) 417
BtuMI TCGCGA 1 cut(s) 162
Csp6I GTAC 2 cut(s) 17, 535
CviAII CATG 3 cut(s) 178, 254, 538
CviJI RGCY 6 cut(s) 262, 470, 485, 529, 542, 567
CviKI_1 RGCY 6 cut(s) 262, 470, 485, 529, 542, 567
CviQI GTAC 2 cut(s) 17, 535
DdeI CTNAG 2 cut(s) 102, 471
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
Eam1104I CTCTTC 3 cut(s) 417, 432, 447
EarI CTCTTC 3 cut(s) 417, 432, 447
EcoRI GAATTC 1 cut(s) 476
EcoRII CCWGG 1 cut(s) 233
FaeI CATG 3 cut(s) 181, 257, 541
FatI CATG 3 cut(s) 177, 253, 537
FbaI TGATCA 1 cut(s) 247
FspBI CTAG 2 cut(s) 263, 574
HaeIII GGCC 1 cut(s) 542
Hin1II CATG 3 cut(s) 181, 257, 541
HinfI GANTC 1 cut(s) 335
HphI GGTGA 1 cut(s) 446
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 2 cut(s) 340, 367
Hpy188III TCNNGA 2 cut(s) 161, 199
Hpy8I GTNNAC 1 cut(s) 126
HpyAV CCTTC 1 cut(s) 286
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 2 cut(s) 39, 46
HpyCH4V TGCA 1 cut(s) 556
HpyF3I CTNAG 2 cut(s) 102, 471
HpySE526I ACGT 2 cut(s) 39, 46
Hsp92II CATG 3 cut(s) 181, 257, 541
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 1 cut(s) 534
LpnPI CCDG 2 cut(s) 220, 247
LweI GCATC 2 cut(s) 216, 232
MaeI CTAG 2 cut(s) 263, 574
MaeII ACGT 2 cut(s) 39, 46
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 7 cut(s) 166, 251, 317, 392, 434, 449, 464
MfeI CAATTG 1 cut(s) 325
MluCI AATT 2 cut(s) 325, 476
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 7 cut(s) 77, 240, 337, 456, 466, 502, 553
MseI TTAA 2 cut(s) 204, 414
MspR9I CCNGG 1 cut(s) 235
MunI CAATTG 1 cut(s) 325
MvaI CCWGG 1 cut(s) 235
MvnI CGCG 1 cut(s) 162
NdeII GATC 1 cut(s) 247
NlaIII CATG 3 cut(s) 181, 257, 541
NruI TCGCGA 1 cut(s) 162
PasI CCCWGGG 1 cut(s) 234
PcsI WCGNNNNNNNCGW 1 cut(s) 399
PfeI GAWTC 1 cut(s) 335
Ppu21I YACGTR 1 cut(s) 47
PshBI ATTAAT 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
RruI TCGCGA 1 cut(s) 162
RsaI GTAC 2 cut(s) 18, 536
RsaNI GTAC 2 cut(s) 17, 535
SaqAI TTAA 2 cut(s) 204, 414
Sau3AI GATC 1 cut(s) 247
ScrFI CCNGG 1 cut(s) 235
SetI ASST 8 cut(s) 22, 42, 49, 131, 297, 472, 531, 569
SfaNI GCATC 2 cut(s) 216, 232
Sse9I AATT 2 cut(s) 325, 476
SsiI CCGC 1 cut(s) 360
SspMI CTAG 2 cut(s) 263, 574
StyD4I CCNGG 1 cut(s) 233
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 2 cut(s) 42, 49
TasI AATT 2 cut(s) 325, 476
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 2 cut(s) 204, 414
Tru9I TTAA 2 cut(s) 204, 414
TspDTI ATGAA 6 cut(s) 17, 166, 282, 318, 393, 469
VspI ATTAAT 1 cut(s) 204
XapI RAATTY 1 cut(s) 476
XspI CTAG 2 cut(s) 263, 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.