Rh1BG196300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0013712
Physical Location & Seq
Reverse (-)
31315008 .. 31316154
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG196300.1

Sequence Viewer

Length: 552 bp
ATGAGGTTGGTTTCAGTACGTAGACCACTTGTTTTTCACGTTTTACGTGCAGCAATCCCTTTTTCCCTCTTGGTTTGCTTCTACATATCTCTGTCAGTTTCTAAGCACCATAGTTTTCTTGTCTCCACCTACGAGTTTATGGTAGTGGCAAAATCAAATCGCAAGTTCGTGTTCTTCATGTTCGCTGTTGTTTGTATCACGATCAATATCGTGTTTGGGATTTTGTGGCCTTCCAGGGAAGATGCTGATCATTATGTTCGGCTAGATGAAGTGAAAGACTATACTGTATTGAAGGTAAGTGATGAAGATTACTATTACTACTACAAATGTAGCGATTGCGATGAGGATAACAAAGAGTGCGGTTCTGATGGTTATGATGAAGATAATGATGACGATGGTAGCGATGACGATGTTAATAGTGAAGAGTTTTATGGTGAAGAGATTGATTCTGAAGAGTTGGAGAGGAGAGCTGAGGAATTCATAGCCAAGCACACAAGGAAATGGAGAGAGGATTTTGTATACGAGAAGCTCACGTACATGGCCTCTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

21.69

Weight (kDa)

4.64

Isoelectric Point (pI)

54.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 22, 519
AciI CCGC 1 cut(s) 360
AcsI RAATTY 1 cut(s) 476
AcuI CTGAAG 1 cut(s) 471
AfaI GTAC 2 cut(s) 18, 536
AgsI TTSAA 1 cut(s) 292
AjnI CCWGG 1 cut(s) 233
AluBI AGCT 2 cut(s) 470, 529
AluI AGCT 2 cut(s) 470, 529
Alw26I GTCTC 1 cut(s) 127
AoxI GGCC 2 cut(s) 227, 540
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 476
AsuHPI GGTGA 1 cut(s) 446
BarI GAAGNNNNNNTAC 2 cut(s) 518, 550
BbvCI CCTCAGC 1 cut(s) 471
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 362, 389
BciT130I CCWGG 1 cut(s) 235
BclI TGATCA 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 127
BfaI CTAG 2 cut(s) 263, 546
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 235
BmsI GCATC 1 cut(s) 232
Bpu10I CCTNAGC 1 cut(s) 471
BsaAI YACGTR 3 cut(s) 20, 47, 534
BsaBI GATNNNNATC 2 cut(s) 206, 246
BsaJI CCNNGG 1 cut(s) 234
Bse8I GATNNNNATC 2 cut(s) 206, 246
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 1 cut(s) 234
BseJI GATNNNNATC 2 cut(s) 206, 246
BseMII CTCAG 1 cut(s) 462
BseRI GAGGAG 1 cut(s) 478
BseXI GCAGC 1 cut(s) 62
BsgI GTGCAG 1 cut(s) 69
BshFI GGCC 2 cut(s) 229, 542
BsmAI GTCTC 1 cut(s) 127
BsnI GGCC 2 cut(s) 229, 542
Bsp143I GATC 2 cut(s) 201, 247
BspACI CCGC 1 cut(s) 360
BspANI GGCC 2 cut(s) 229, 542
BspCNI CTCAG 1 cut(s) 463
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 2 cut(s) 201, 247
BssNAI GTATAC 1 cut(s) 520
Bst1107I GTATAC 1 cut(s) 520
Bst2UI CCWGG 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 3 cut(s) 417, 432, 447
BstBAI YACGTR 3 cut(s) 20, 47, 534
BstDEI CTNAG 2 cut(s) 102, 471
BstKTI GATC 2 cut(s) 204, 250
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 2 cut(s) 201, 247
BstNI CCWGG 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 233
BstSNI TACGTA 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 62
BstZ17I GTATAC 1 cut(s) 520
BsuRI GGCC 2 cut(s) 229, 542
BtgZI GCGATG 2 cut(s) 354, 417
Csp6I GTAC 2 cut(s) 17, 535
CviAII CATG 2 cut(s) 178, 538
CviJI RGCY 6 cut(s) 229, 262, 470, 485, 529, 542
CviKI_1 RGCY 6 cut(s) 229, 262, 470, 485, 529, 542
CviQI GTAC 2 cut(s) 17, 535
DdeI CTNAG 2 cut(s) 102, 471
DpnI GATC 2 cut(s) 203, 249
DpnII GATC 2 cut(s) 201, 247
Eam1104I CTCTTC 3 cut(s) 417, 432, 447
EarI CTCTTC 3 cut(s) 417, 432, 447
Eco105I TACGTA 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 471
EcoRI GAATTC 1 cut(s) 476
EcoRII CCWGG 1 cut(s) 233
FaeI CATG 2 cut(s) 181, 541
FatI CATG 2 cut(s) 177, 537
FbaI TGATCA 1 cut(s) 247
FblI GTMKAC 2 cut(s) 22, 519
Fnu4HI GCNGC 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 2 cut(s) 263, 546
GluI GCNGC 1 cut(s) 51
HaeIII GGCC 2 cut(s) 229, 542
Hin1II CATG 2 cut(s) 181, 541
HinfI GANTC 1 cut(s) 446
HphI GGTGA 1 cut(s) 446
Hpy166II GTNNAC 2 cut(s) 23, 520
Hpy188I TCNGA 2 cut(s) 367, 451
Hpy188III TCNNGA 2 cut(s) 199, 546
Hpy8I GTNNAC 2 cut(s) 23, 520
HpyAV CCTTC 2 cut(s) 240, 286
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 4 cut(s) 19, 39, 46, 533
HpyCH4V TGCA 1 cut(s) 50
HpyF3I CTNAG 2 cut(s) 102, 471
HpySE526I ACGT 4 cut(s) 19, 39, 46, 533
Hsp92II CATG 2 cut(s) 181, 541
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 201, 247
LpnPI CCDG 2 cut(s) 220, 247
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 263, 546
MaeII ACGT 4 cut(s) 19, 39, 46, 533
MalI GATC 2 cut(s) 203, 249
MboI GATC 2 cut(s) 201, 247
MboII GAAGA 7 cut(s) 166, 251, 317, 392, 434, 449, 464
MluCI AATT 1 cut(s) 476
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 5 cut(s) 77, 337, 456, 466, 502
MseI TTAA 1 cut(s) 414
MslI CAYNNNNRTG 1 cut(s) 536
MspR9I CCNGG 1 cut(s) 235
MvaI CCWGG 1 cut(s) 235
NdeII GATC 2 cut(s) 201, 247
NlaIII CATG 2 cut(s) 181, 541
PcsI WCGNNNNNNNCGW 1 cut(s) 399
PfeI GAWTC 1 cut(s) 446
PkrI GCNGC 1 cut(s) 52
Ppu21I YACGTR 3 cut(s) 20, 47, 534
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
RsaI GTAC 2 cut(s) 18, 536
RsaNI GTAC 2 cut(s) 17, 535
RseI CAYNNNNRTG 1 cut(s) 536
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 2 cut(s) 201, 247
ScrFI CCNGG 1 cut(s) 235
SetI ASST 9 cut(s) 8, 22, 42, 49, 131, 297, 472, 531, 536
SfaNI GCATC 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 536
SnaBI TACGTA 1 cut(s) 20
Sse9I AATT 1 cut(s) 476
SsiI CCGC 1 cut(s) 360
SspMI CTAG 2 cut(s) 263, 546
StyD4I CCNGG 1 cut(s) 233
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 4 cut(s) 22, 42, 49, 536
TasI AATT 1 cut(s) 476
TfiI GAWTC 1 cut(s) 446
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 5 cut(s) 166, 282, 318, 393, 469
XapI RAATTY 1 cut(s) 476
XbaI TCTAGA 1 cut(s) 545
XmiI GTMKAC 2 cut(s) 22, 519
XspI CTAG 2 cut(s) 263, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.