Rh5AG286800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0013712
Physical Location & Seq
Reverse (-)
38850488 .. 38852933
2446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG286800.1

Sequence Viewer

Length: 666 bp
ATGGTAGTGGCAAAATCAAATAGCGAGTTCGTGTTCTTCATGGTCACTGTTGTTTCTCTCACGATTAATATCGTGTTTGGGATTTTGAGGCCTCCCAGGGAAGATGCTGATCATTATGTTCGGCTAGATCAAGTGAAAGACAATACTGTATTGAGGGTAAGTGATGAAGATTGCGATGAGGATAACAATGAGTGCGGTTCTGATGGTTATGATGAAGATAATGATGACGATGGTAGCGAAGAGTCGGAGAGGAGAGCTGAAGAATTCATAGCCAAGCACGCAAGGAAATGGAGAGAGGATTTTGTATACGAGAAGCTCACGTACATGGCCTCTATAGAGTTGCAATCAGCTCTATCTAGCCCAAGAAAACACCCTAAAGGACAAATGGTAGAAGTGCAAGATAGAAACCCTAGTTTTGTCCAAAGTTGCTATTGCTGCAGTAGCGGTGACATAGGTTTGATCCGGTGGGGCGGTAAGCAAAATTGTTTGGCTGGTGTGAAGGTGGGGTGGCTTGGTGCTATATCCAGAGCACGAAGGTACATTGGGGATTATTGCTCTTCAGAGTTCCCGTCTTGGTCCGGTTGGCATCCAATTGCATGTTTCGGCTTTCTTGTTGCTGCTATCGGTGATAGGAGCTTTTCCGTAGTAATTGTTGACGGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

24.86

Weight (kDa)

4.77

Isoelectric Point (pI)

61.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 306
AciI CCGC 3 cut(s) 195, 444, 471
AclWI GGATC 1 cut(s) 454
AcsI RAATTY 1 cut(s) 263
AcuI CTGAAG 2 cut(s) 279, 543
AfaI GTAC 2 cut(s) 323, 539
AjnI CCWGG 1 cut(s) 95
AluBI AGCT 4 cut(s) 257, 316, 350, 636
AluI AGCT 4 cut(s) 257, 316, 350, 636
Alw21I GWGCWC 1 cut(s) 532
AlwI GGATC 1 cut(s) 454
AoxI GGCC 2 cut(s) 89, 327
ApeKI GCWGC 2 cut(s) 435, 617
ApoI RAATTY 1 cut(s) 263
AseI ATTAAT 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 576
AsuHPI GGTGA 2 cut(s) 458, 638
AvaII GGWCC 1 cut(s) 576
BarI GAAGNNNNNNTAC 2 cut(s) 305, 337
Bbv12I GWGCWC 1 cut(s) 532
BbvI GCAGC 2 cut(s) 422, 604
BccI CCATC 2 cut(s) 197, 224
BciT130I CCWGG 1 cut(s) 97
BclI TGATCA 1 cut(s) 109
BfaI CTAG 3 cut(s) 125, 357, 411
BfmI CTRYAG 2 cut(s) 333, 436
BisI GCNGC 2 cut(s) 436, 618
BlsI GCNGC 2 cut(s) 437, 619
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 576
BmgT120I GGNCC 1 cut(s) 576
BmrFI CCNGG 1 cut(s) 97
BmsI GCATC 2 cut(s) 94, 595
BsaAI YACGTR 1 cut(s) 321
BsaBI GATNNNNATC 2 cut(s) 68, 108
BsaJI CCNNGG 2 cut(s) 95, 96
BsaWI WCCGGW 2 cut(s) 462, 578
Bse8I GATNNNNATC 2 cut(s) 68, 108
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 2 cut(s) 95, 96
BseGI GGATG 1 cut(s) 586
BseJI GATNNNNATC 2 cut(s) 68, 108
BseRI GAGGAG 1 cut(s) 265
BseXI GCAGC 2 cut(s) 422, 604
BshFI GGCC 2 cut(s) 91, 329
BsiHKAI GWGCWC 1 cut(s) 532
BsiSI CCGG 2 cut(s) 463, 579
BsnI GGCC 2 cut(s) 91, 329
Bsp1286I GDGCHC 1 cut(s) 532
Bsp143I GATC 3 cut(s) 109, 127, 459
BspACI CCGC 3 cut(s) 195, 444, 471
BspANI GGCC 2 cut(s) 91, 329
BspMAI CTGCAG 1 cut(s) 440
BspPI GGATC 1 cut(s) 454
BspQI GCTCTTC 1 cut(s) 562
BssECI CCNNGG 2 cut(s) 95, 96
BssMI GATC 3 cut(s) 109, 127, 459
BssNAI GTATAC 1 cut(s) 307
Bst1107I GTATAC 1 cut(s) 307
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 3 cut(s) 49, 148, 659
Bst6I CTCTTC 2 cut(s) 234, 562
BstBAI YACGTR 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 279
BstF5I GGATG 1 cut(s) 586
BstKTI GATC 3 cut(s) 112, 130, 462
BstMBI GATC 3 cut(s) 109, 127, 459
BstMWI GCNNNNNNNGC 3 cut(s) 278, 435, 441
BstNI CCWGG 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 600
BstSCI CCNGG 1 cut(s) 95
BstSFI CTRYAG 2 cut(s) 333, 436
BstV1I GCAGC 2 cut(s) 422, 604
BstZ17I GTATAC 1 cut(s) 307
BsuRI GGCC 2 cut(s) 91, 329
BtgZI GCGATG 1 cut(s) 189
BtsCI GGATG 1 cut(s) 586
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 576
Csp6I GTAC 2 cut(s) 322, 538
CviAII CATG 3 cut(s) 40, 325, 597
CviQI GTAC 2 cut(s) 322, 538
DpnI GATC 3 cut(s) 111, 129, 461
DpnII GATC 3 cut(s) 109, 127, 459
Eam1104I CTCTTC 2 cut(s) 234, 562
EarI CTCTTC 2 cut(s) 234, 562
Eco147I AGGCCT 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 576
Eco57I CTGAAG 2 cut(s) 279, 543
EcoRI GAATTC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 95
FaeI CATG 3 cut(s) 43, 328, 600
FatI CATG 3 cut(s) 39, 324, 596
FbaI TGATCA 1 cut(s) 109
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 436, 618
FokI GGATG 1 cut(s) 573
Fsp4HI GCNGC 2 cut(s) 436, 618
FspBI CTAG 3 cut(s) 125, 357, 411
GluI GCNGC 2 cut(s) 436, 618
HaeIII GGCC 2 cut(s) 91, 329
HapII CCGG 2 cut(s) 463, 579
Hin1II CATG 3 cut(s) 43, 328, 600
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HinfI GANTC 1 cut(s) 242
HpaII CCGG 2 cut(s) 463, 579
HphI GGTGA 2 cut(s) 458, 638
Hpy166II GTNNAC 2 cut(s) 307, 655
Hpy188I TCNGA 3 cut(s) 202, 247, 562
Hpy188III TCNNGA 2 cut(s) 61, 525
Hpy8I GTNNAC 2 cut(s) 307, 655
HpyAV CCTTC 2 cut(s) 493, 528
HpyCH4III ACNGT 3 cut(s) 49, 148, 659
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 4 cut(s) 343, 397, 438, 596
HpyF10VI GCNNNNNNNGC 3 cut(s) 278, 435, 441
HpySE526I ACGT 1 cut(s) 320
Hsp92II CATG 3 cut(s) 43, 328, 600
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 3 cut(s) 109, 127, 459
LguI GCTCTTC 1 cut(s) 562
LmnI GCTCC 1 cut(s) 633
LpnPI CCDG 6 cut(s) 82, 109, 476, 477, 538, 592
Lsp1109I GCAGC 2 cut(s) 422, 604
LweI GCATC 2 cut(s) 94, 595
MaeI CTAG 3 cut(s) 125, 357, 411
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 2 cut(s) 43, 446
MalI GATC 3 cut(s) 111, 129, 461
MboI GATC 3 cut(s) 109, 127, 459
MboII GAAGA 7 cut(s) 28, 113, 179, 227, 251, 272, 549
MfeI CAATTG 1 cut(s) 591
MhlI GDGCHC 1 cut(s) 532
MluCI AATT 4 cut(s) 263, 481, 591, 648
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 7 cut(s) 81, 102, 147, 172, 243, 289, 340
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 1 cut(s) 323
MspI CCGG 2 cut(s) 463, 579
MspR9I CCNGG 1 cut(s) 97
MunI CAATTG 1 cut(s) 591
MvaI CCWGG 1 cut(s) 97
MwoI GCNNNNNNNGC 3 cut(s) 278, 435, 441
NdeII GATC 3 cut(s) 109, 127, 459
NlaIII CATG 3 cut(s) 43, 328, 600
NmuCI GTSAC 2 cut(s) 43, 446
NspI RCATGY 1 cut(s) 600
PasI CCCWGGG 1 cut(s) 96
PceI AGGCCT 1 cut(s) 91
PciSI GCTCTTC 1 cut(s) 562
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PkrI GCNGC 2 cut(s) 437, 619
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
Ppu21I YACGTR 1 cut(s) 321
PshBI ATTAAT 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspPI GGNCC 1 cut(s) 576
PstI CTGCAG 1 cut(s) 440
RsaI GTAC 2 cut(s) 323, 539
RsaNI GTAC 2 cut(s) 322, 538
RseI CAYNNNNRTG 1 cut(s) 323
SapI GCTCTTC 1 cut(s) 562
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 2 cut(s) 436, 618
Sau3AI GATC 3 cut(s) 109, 127, 459
Sau96I GGNCC 1 cut(s) 576
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 1 cut(s) 532
SetI ASST 8 cut(s) 259, 318, 323, 352, 457, 504, 539, 638
SfaNI GCATC 2 cut(s) 94, 595
SfcI CTRYAG 2 cut(s) 333, 436
SinI GGWCC 1 cut(s) 576
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 4 cut(s) 263, 481, 591, 648
SseBI AGGCCT 1 cut(s) 91
SsiI CCGC 3 cut(s) 195, 444, 471
SspMI CTAG 3 cut(s) 125, 357, 411
StuI AGGCCT 1 cut(s) 91
StyD4I CCNGG 1 cut(s) 95
TaaI ACNGT 3 cut(s) 49, 148, 659
TaiI ACGT 1 cut(s) 323
TasI AATT 4 cut(s) 263, 481, 591, 648
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 2 cut(s) 43, 446
TseI GCWGC 2 cut(s) 435, 617
Tsp45I GTSAC 2 cut(s) 43, 446
TspDTI ATGAA 4 cut(s) 28, 180, 228, 256
TspGWI ACGGA 1 cut(s) 631
TspRI CASTG 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 576
VspI ATTAAT 1 cut(s) 66
XapI RAATTY 1 cut(s) 263
XceI RCATGY 1 cut(s) 600
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 3 cut(s) 125, 357, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.