RLG00000028465

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0013712
Physical Location & Seq
Forward (+)
23124791 .. 23128001
3211 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028465

Sequence Viewer

Length: 576 bp
ATGTTCTTCATGGTCGCTGTTGTTTCTATCACGATTAATATCGTGTTTGGGATTTTGAGGCCTCCCAGGGAAGATGCTGATCATTATGTTCGGCTAGATGAAGTGAAAGACTATACTGTATTGAAGGTAAGTGATGAAGATTACTATTACTACTACAAATGTAGCGATTGCGATGAGGATAACAATGAGTGCGGTTCTGATGGTTATGATGAAGATAATGATGACGATGGTAGCGATGACGATGTTAATAGTGAAGAGTTTTATGGTGAAGGGATTGATTCTGAAGAGTTGGAGAGGAGAGCTGAGGAATTCATAGCCAAGCACACAAGGAAATGGAGAGAGGATTTTGTATGCGAGAAGCTCACTAGCGGTGACATAGGTTTGATCCGGTGGGGCGGTAAGCAAAATTGTTTGGCTGTTGTGAAGGTGGGGTGGCTAGGTGCTATATCCAATGCACGAAGGTTTTCAACCTTCAGGGTTCAAGGTTGTCGGAGTTGTTCGTTGACAGCCTCGGGATACGGCTGCGTAGAGGGCTTGGCTGTGCTGGGCGTGGCGGCATTGAGCAGCTCTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.39

Weight (kDa)

4.38

Isoelectric Point (pI)

50.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 192, 369, 396, 554
AclWI GGATC 1 cut(s) 379
AcsI RAATTY 1 cut(s) 308
AcuI CTGAAG 2 cut(s) 303, 457
AgsI TTSAA 3 cut(s) 124, 468, 482
AjnI CCWGG 1 cut(s) 65
AluBI AGCT 3 cut(s) 302, 361, 567
AluI AGCT 3 cut(s) 302, 361, 567
AlwI GGATC 1 cut(s) 379
Ama87I CYCGRG 1 cut(s) 511
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 2 cut(s) 522, 564
ApoI RAATTY 1 cut(s) 308
AseI ATTAAT 1 cut(s) 36
Asp700I GAANNNNTTC 1 cut(s) 463
AsuHPI GGTGA 2 cut(s) 278, 383
AvaI CYCGRG 1 cut(s) 511
BbvCI CCTCAGC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 509
BccI CCATC 2 cut(s) 194, 221
BceAI ACGGC 1 cut(s) 535
BciT130I CCWGG 1 cut(s) 67
BciVI GTATCC 1 cut(s) 509
BclI TGATCA 1 cut(s) 79
BfaI CTAG 3 cut(s) 95, 366, 437
BfuI GTATCC 1 cut(s) 509
BisI GCNGC 3 cut(s) 523, 555, 565
BlsI GCNGC 3 cut(s) 524, 556, 566
Bme1390I CCNGG 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 511
BmrFI CCNGG 1 cut(s) 67
BmsI GCATC 1 cut(s) 64
Bpu10I CCTNAGC 1 cut(s) 303
BsaBI GATNNNNATC 2 cut(s) 38, 78
BsaJI CCNNGG 3 cut(s) 65, 66, 510
BsaWI WCCGGW 1 cut(s) 387
Bse8I GATNNNNATC 2 cut(s) 38, 78
BseBI CCWGG 1 cut(s) 67
BseDI CCNNGG 3 cut(s) 65, 66, 510
BseJI GATNNNNATC 2 cut(s) 38, 78
BseMII CTCAG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 310
BseXI GCAGC 1 cut(s) 509
BseYI CCCAGC 1 cut(s) 544
BshFI GGCC 1 cut(s) 61
BsiHKCI CYCGRG 1 cut(s) 511
BsiSI CCGG 1 cut(s) 388
BsnI GGCC 1 cut(s) 61
BsoBI CYCGRG 1 cut(s) 511
Bsp143I GATC 2 cut(s) 79, 384
BspACI CCGC 4 cut(s) 192, 369, 396, 554
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 1 cut(s) 295
BspPI GGATC 1 cut(s) 379
BssECI CCNNGG 3 cut(s) 65, 66, 510
BssMI GATC 2 cut(s) 79, 384
Bst2UI CCWGG 1 cut(s) 67
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 2 cut(s) 249, 279
BstDEI CTNAG 1 cut(s) 303
BstKTI GATC 2 cut(s) 82, 387
BstMBI GATC 2 cut(s) 79, 384
BstMWI GCNNNNNNNGC 1 cut(s) 531
BstNI CCWGG 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 509
BsuI GTATCC 1 cut(s) 509
BsuRI GGCC 1 cut(s) 61
BtgZI GCGATG 2 cut(s) 186, 249
CviAII CATG 1 cut(s) 10
DdeI CTNAG 1 cut(s) 303
DpnI GATC 2 cut(s) 81, 386
DpnII GATC 2 cut(s) 79, 384
Eam1104I CTCTTC 2 cut(s) 249, 279
EarI CTCTTC 2 cut(s) 249, 279
Eco147I AGGCCT 1 cut(s) 61
Eco57I CTGAAG 2 cut(s) 303, 457
Eco88I CYCGRG 1 cut(s) 511
EcoRI GAATTC 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 65
FaeI CATG 1 cut(s) 13
FaiI YATR 9 cut(s) 11, 87, 114, 207, 264, 314, 352, 377, 446
FatI CATG 1 cut(s) 9
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 3 cut(s) 523, 555, 565
Fsp4HI GCNGC 3 cut(s) 523, 555, 565
FspBI CTAG 3 cut(s) 95, 366, 437
GluI GCNGC 3 cut(s) 523, 555, 565
GsaI CCCAGC 1 cut(s) 548
HaeIII GGCC 1 cut(s) 61
HapII CCGG 1 cut(s) 388
Hin1II CATG 1 cut(s) 13
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HinfI GANTC 1 cut(s) 278
HpaII CCGG 1 cut(s) 388
HphI GGTGA 2 cut(s) 278, 383
Hpy166II GTNNAC 1 cut(s) 504
Hpy188I TCNGA 3 cut(s) 199, 283, 492
Hpy188III TCNNGA 2 cut(s) 31, 513
Hpy8I GTNNAC 1 cut(s) 504
HpyAV CCTTC 5 cut(s) 118, 263, 418, 453, 481
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 1 cut(s) 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 531
HpyF3I CTNAG 1 cut(s) 303
Hsp92II CATG 1 cut(s) 13
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 2 cut(s) 79, 384
LpnPI CCDG 5 cut(s) 52, 79, 401, 460, 530
Lsp1109I GCAGC 1 cut(s) 509
LweI GCATC 1 cut(s) 64
MaeI CTAG 3 cut(s) 95, 366, 437
MaeIII GTNAC 1 cut(s) 371
MalI GATC 2 cut(s) 81, 386
MboI GATC 2 cut(s) 79, 384
MboII GAAGA 5 cut(s) 83, 149, 224, 266, 296
MluCI AATT 2 cut(s) 308, 406
MmeI TCCRAC 2 cut(s) 270, 470
MnlI CCTC 8 cut(s) 51, 72, 169, 288, 298, 334, 520, 523
MroXI GAANNNNTTC 1 cut(s) 463
MseI TTAA 2 cut(s) 36, 246
MspI CCGG 1 cut(s) 388
MspR9I CCNGG 1 cut(s) 67
MvaI CCWGG 1 cut(s) 67
MwoI GCNNNNNNNGC 1 cut(s) 531
NdeII GATC 2 cut(s) 79, 384
NlaIII CATG 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 371
PasI CCCWGGG 1 cut(s) 66
PceI AGGCCT 1 cut(s) 61
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PdmI GAANNNNTTC 1 cut(s) 463
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 3 cut(s) 524, 556, 566
PshBI ATTAAT 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 65
PspFI CCCAGC 1 cut(s) 544
PspGI CCWGG 1 cut(s) 65
SaqAI TTAA 2 cut(s) 36, 246
SatI GCNGC 3 cut(s) 523, 555, 565
Sau3AI GATC 2 cut(s) 79, 384
ScrFI CCNGG 1 cut(s) 67
SfaNI GCATC 1 cut(s) 64
Sse9I AATT 2 cut(s) 308, 406
SseBI AGGCCT 1 cut(s) 61
SsiI CCGC 4 cut(s) 192, 369, 396, 554
SspMI CTAG 3 cut(s) 95, 366, 437
StuI AGGCCT 1 cut(s) 61
StyD4I CCNGG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 118
TasI AATT 2 cut(s) 308, 406
TauI GCSGC 1 cut(s) 557
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 2 cut(s) 36, 246
Tru9I TTAA 2 cut(s) 36, 246
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 2 cut(s) 522, 564
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 4 cut(s) 114, 150, 225, 301
VspI ATTAAT 1 cut(s) 36
XapI RAATTY 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 463
XspI CTAG 3 cut(s) 95, 366, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.