Rh5CG323500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0013712
Physical Location & Seq
Reverse (-)
35812179 .. 35813040
862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG323500.1

Sequence Viewer

Length: 411 bp
ATGGTAGTGGCAAAATCAAATCGCGAGTTCGTGTTCTTCATGGTCACTGTTGTTTCTCTCACGATTAATATCGTGTTTGGGATTTTGAGGCCTCCCAGGGAAGATGCTGATCATTATGTTCGGCTAGATGAAGTGAAAGACTATACTGTATTGAAGGTAAGTGATGAAGATTACTATTACTACTACAAATGTAGCGATTGCGATGAGGATAACAATGAGTGCGGTTCTGATGGTTATGATGAAGATAATGATGACGATGGTAGCGATGACGATGTTAATAGTGAAGAGTTTTATGGTGAAGAGATTGATAGTGAAGAGTTGGAGAGGAAAGCTGAGGAATTCATAGCCAAGCACACAAGGAAATGGAGAGAACTTTTGGTTACGAGAAGCTCACGTACATGGCCTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

16.06

Weight (kDa)

4.25

Isoelectric Point (pI)

52.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 24
AciI CCGC 1 cut(s) 222
AcsI RAATTY 1 cut(s) 338
AfaI GTAC 1 cut(s) 397
AgsI TTSAA 1 cut(s) 154
AjnI CCWGG 1 cut(s) 95
AluBI AGCT 2 cut(s) 332, 390
AluI AGCT 2 cut(s) 332, 390
AoxI GGCC 2 cut(s) 89, 401
ApoI RAATTY 1 cut(s) 338
AseI ATTAAT 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 308
BarI GAAGNNNNNNTAC 2 cut(s) 379, 411
BbvCI CCTCAGC 1 cut(s) 333
BccI CCATC 2 cut(s) 224, 251
BciT130I CCWGG 1 cut(s) 97
BclI TGATCA 1 cut(s) 109
BfaI CTAG 1 cut(s) 125
BfmI CTRYAG 1 cut(s) 407
Bme1390I CCNGG 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 97
BmsI GCATC 1 cut(s) 94
Bpu10I CCTNAGC 1 cut(s) 333
BsaAI YACGTR 1 cut(s) 395
BsaBI GATNNNNATC 2 cut(s) 68, 108
BsaJI CCNNGG 2 cut(s) 95, 96
Bse8I GATNNNNATC 2 cut(s) 68, 108
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 2 cut(s) 95, 96
BseJI GATNNNNATC 2 cut(s) 68, 108
BseMII CTCAG 1 cut(s) 324
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 2 cut(s) 91, 403
BsnI GGCC 2 cut(s) 91, 403
Bsp143I GATC 1 cut(s) 109
Bsp68I TCGCGA 1 cut(s) 24
BspACI CCGC 1 cut(s) 222
BspANI GGCC 2 cut(s) 91, 403
BspCNI CTCAG 1 cut(s) 325
BspFNI CGCG 1 cut(s) 24
BssECI CCNNGG 2 cut(s) 95, 96
BssMI GATC 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 2 cut(s) 49, 148
Bst6I CTCTTC 3 cut(s) 279, 294, 309
BstBAI YACGTR 1 cut(s) 395
BstDEI CTNAG 1 cut(s) 333
BstFNI CGCG 1 cut(s) 24
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstNI CCWGG 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 407
BstUI CGCG 1 cut(s) 24
BsuRI GGCC 2 cut(s) 91, 403
BtgZI GCGATG 2 cut(s) 216, 279
BtsIMutI CAGTG 1 cut(s) 45
BtuMI TCGCGA 1 cut(s) 24
Csp6I GTAC 1 cut(s) 396
CviAII CATG 2 cut(s) 40, 399
CviJI RGCY 6 cut(s) 91, 124, 332, 347, 390, 403
CviKI_1 RGCY 6 cut(s) 91, 124, 332, 347, 390, 403
CviQI GTAC 1 cut(s) 396
DdeI CTNAG 1 cut(s) 333
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eam1104I CTCTTC 3 cut(s) 279, 294, 309
EarI CTCTTC 3 cut(s) 279, 294, 309
Eco147I AGGCCT 1 cut(s) 91
EcoRI GAATTC 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 95
FaeI CATG 2 cut(s) 43, 402
FaiI YATR 8 cut(s) 41, 117, 144, 237, 294, 344, 400, 409
FatI CATG 2 cut(s) 39, 398
FbaI TGATCA 1 cut(s) 109
FspBI CTAG 1 cut(s) 125
HaeIII GGCC 2 cut(s) 91, 403
Hin1II CATG 2 cut(s) 43, 402
HphI GGTGA 1 cut(s) 308
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 2 cut(s) 23, 61
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 2 cut(s) 49, 148
HpyCH4IV ACGT 1 cut(s) 394
HpyF3I CTNAG 1 cut(s) 333
HpySE526I ACGT 1 cut(s) 394
Hsp92II CATG 2 cut(s) 43, 402
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 2 cut(s) 82, 109
LweI GCATC 1 cut(s) 94
MaeI CTAG 1 cut(s) 125
MaeII ACGT 1 cut(s) 394
MaeIII GTNAC 2 cut(s) 43, 379
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 7 cut(s) 28, 113, 179, 254, 296, 311, 326
MluCI AATT 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 5 cut(s) 81, 102, 199, 318, 328
MseI TTAA 2 cut(s) 66, 276
MslI CAYNNNNRTG 1 cut(s) 397
MspR9I CCNGG 1 cut(s) 97
MvaI CCWGG 1 cut(s) 97
MvnI CGCG 1 cut(s) 24
NdeII GATC 1 cut(s) 109
NlaIII CATG 2 cut(s) 43, 402
NmuCI GTSAC 1 cut(s) 43
NruI TCGCGA 1 cut(s) 24
PasI CCCWGGG 1 cut(s) 96
PceI AGGCCT 1 cut(s) 91
PcsI WCGNNNNNNNCGW 1 cut(s) 261
Ppu21I YACGTR 1 cut(s) 395
PshBI ATTAAT 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
RruI TCGCGA 1 cut(s) 24
RsaI GTAC 1 cut(s) 397
RsaNI GTAC 1 cut(s) 396
RseI CAYNNNNRTG 1 cut(s) 397
SaqAI TTAA 2 cut(s) 66, 276
Sau3AI GATC 1 cut(s) 109
ScrFI CCNGG 1 cut(s) 97
SetI ASST 4 cut(s) 159, 334, 392, 397
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 407
SmiMI CAYNNNNRTG 1 cut(s) 397
Sse9I AATT 1 cut(s) 338
SseBI AGGCCT 1 cut(s) 91
SsiI CCGC 1 cut(s) 222
SspMI CTAG 1 cut(s) 125
StuI AGGCCT 1 cut(s) 91
StyD4I CCNGG 1 cut(s) 95
TaaI ACNGT 2 cut(s) 49, 148
TaiI ACGT 1 cut(s) 397
TasI AATT 1 cut(s) 338
Tru1I TTAA 2 cut(s) 66, 276
Tru9I TTAA 2 cut(s) 66, 276
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 5 cut(s) 28, 144, 180, 255, 331
TspRI CASTG 1 cut(s) 52
VspI ATTAAT 1 cut(s) 66
XapI RAATTY 1 cut(s) 338
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.