MD02G1203500.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
20322471 .. 20323022
552 bp
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UTR
Exon/CDS
Intron
MD02G1203500.v1.1.491

Sequence Viewer

Length: 552 bp
ATGAAGGCAGTTTCAGCACCAGCACTATTTGTTTTCTTTCTCTTGTGTCTAGCAATCCCTCTTATCCTTTTCATTTCCTTCTCGTTGTCTCTCTCGGTTTCACAACACCACAACTTTCTTCTTTCCACCTACGAATTCATCGTGGTGGCAAAATCGAATCGTGTGGCCGTGTTCTTCATGTTTAATGTCATCTTTATCACAATTGTGTTCGGGAGTTTCAGGCCATCCAAAGAAGAGTTTGAACGGTATGAAGTGAAAAATGATACAAAAGAAGAAGAAAGAAAGGTTGAAGATTATTATTGTGACTATAGTAGTGATTATGAGGAGGGCAGTGAGTATTATGGTTCCGATGGTTATGATGAAGACGAAGATGATGATGGTAGTTATGATGACGATATTGATAGTGAAGACTTTTTTGGTGAAGAAAAAGATAGTGACTTAGAGAGGAGAACCGAGGATTTCATAGCCAAAGTCACAACGAAATGGAGAGAGGAGTTGCGTTATGATATGTTCATGGCTTCAATAGAGTCACAATCATCCGTCTCTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

21.36

Weight (kDa)

4.2

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 1 cut(s) 134
AgsI TTSAA 3 cut(s) 242, 290, 522
AjuI GAANNNNNNNTTGG 2 cut(s) 399, 431
AleI CACNNNNGTG 1 cut(s) 203
Alw26I GTCTC 2 cut(s) 93, 547
AoxI GGCC 2 cut(s) 165, 221
ApoI RAATTY 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 431
BbsI GAAGAC 2 cut(s) 369, 414
BccI CCATC 3 cut(s) 232, 344, 371
BceAI ACGGC 1 cut(s) 152
BcoDI GTCTC 2 cut(s) 93, 547
BfaI CTAG 2 cut(s) 50, 550
BfmI CTRYAG 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 346
BpiI GAAGAC 2 cut(s) 369, 414
BsaJI CCNNGG 1 cut(s) 453
BseDI CCNNGG 1 cut(s) 453
BseGI GGATG 2 cut(s) 224, 536
BseRI GAGGAG 3 cut(s) 338, 460, 506
BshFI GGCC 2 cut(s) 167, 223
BsmAI GTCTC 2 cut(s) 93, 547
BsmBI CGTCTC 1 cut(s) 547
BsnI GGCC 2 cut(s) 167, 223
BspANI GGCC 2 cut(s) 167, 223
BspLI GGNNCC 1 cut(s) 346
BssECI CCNNGG 1 cut(s) 453
Bst4CI ACNGT 1 cut(s) 246
Bst6I CTCTTC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 439
BstF5I GGATG 2 cut(s) 224, 536
BstMAI GTCTC 2 cut(s) 93, 547
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstSFI CTRYAG 1 cut(s) 307
BstV2I GAAGAC 2 cut(s) 369, 414
BsuRI GGCC 2 cut(s) 167, 223
BtsCI GGATG 2 cut(s) 224, 536
BtsI GCAGTG 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 337
CviAII CATG 2 cut(s) 178, 514
CviJI RGCY 5 cut(s) 167, 223, 467, 518, 549
CviKI_1 RGCY 5 cut(s) 167, 223, 467, 518, 549
DdeI CTNAG 1 cut(s) 439
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
EcoRI GAATTC 1 cut(s) 134
Esp3I CGTCTC 1 cut(s) 547
FaeI CATG 2 cut(s) 181, 517
FatI CATG 2 cut(s) 177, 513
FokI GGATG 2 cut(s) 211, 523
FspBI CTAG 2 cut(s) 50, 550
HaeIII GGCC 2 cut(s) 167, 223
Hin1II CATG 2 cut(s) 181, 517
HinfI GANTC 2 cut(s) 157, 527
HphI GGTGA 1 cut(s) 431
Hpy188I TCNGA 1 cut(s) 349
Hpy188III TCNNGA 1 cut(s) 211
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 246
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 439
Hsp92II CATG 2 cut(s) 181, 517
LpnPI CCDG 3 cut(s) 33, 205, 531
MaeI CTAG 2 cut(s) 50, 550
MaeIII GTNAC 4 cut(s) 302, 434, 472, 528
MfeI CAATTG 1 cut(s) 201
MluCI AATT 2 cut(s) 134, 201
MlyI GAGTC 1 cut(s) 536
MnlI CCTC 6 cut(s) 69, 316, 319, 438, 448, 484
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 2 cut(s) 143, 203
MunI CAATTG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 14
NlaIII CATG 2 cut(s) 181, 517
NlaIV GGNNCC 1 cut(s) 346
NmuCI GTSAC 4 cut(s) 302, 434, 472, 528
OliI CACNNNNGTG 1 cut(s) 203
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PfeI GAWTC 1 cut(s) 157
PleI GAGTC 1 cut(s) 535
PpsI GAGTC 1 cut(s) 535
PspN4I GGNNCC 1 cut(s) 346
RseI CAYNNNNRTG 2 cut(s) 143, 203
SaqAI TTAA 1 cut(s) 183
SchI GAGTC 1 cut(s) 536
SetI ASST 2 cut(s) 131, 288
SfcI CTRYAG 1 cut(s) 307
SmiMI CAYNNNNRTG 2 cut(s) 143, 203
Sse9I AATT 2 cut(s) 134, 201
SspMI CTAG 2 cut(s) 50, 550
TaaI ACNGT 1 cut(s) 246
TaqI TCGA 1 cut(s) 155
TasI AATT 2 cut(s) 134, 201
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 1 cut(s) 337
TseFI GTSAC 4 cut(s) 302, 434, 472, 528
Tsp45I GTSAC 4 cut(s) 302, 434, 472, 528
TspDTI ATGAA 8 cut(s) 17, 61, 127, 166, 264, 375, 451, 502
TspGWI ACGGA 1 cut(s) 529
TspRI CASTG 1 cut(s) 337
XapI RAATTY 1 cut(s) 134
XspI CTAG 2 cut(s) 50, 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.