RLG00000028466

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0013712
Physical Location & Seq
Forward (+)
23135286 .. 23157594
22309 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028466

Sequence Viewer

Length: 591 bp
ATGGTAGTGGCAAAATCAAATCGCGAGTTCATGTTCTTCATGTTCGCTGTTGTTTCTATCACGATCAATATCGTGTTTGGGATTTTGTGGCCTCCCAGGGAAGATGCTGATCTTTATGTTCGGCTAGATGAAGTGAAAGACTATACTGTATTGAAGGTAAGTGATAAAGATTACTATTTCTACTACAAATGTAGCGATTGCGATGAGGATAACAATGAGTGCGGTTCTGATGGTTATGATGAATATAATGATGACGATGGTAGCGATGACGATGTTAATAGTGAAGAGTTTTATGGTGAAGAGATTGATTCTGAAGAGTTGGAGAGGAGAGCTGAGGAATTCATAGCCAAGCACACAAGGAAATGGAGAGAGGATTTTGTATACGAGAAGCTCACTAGCGGTGACATAGGTTTGATCCCGTGGGGCGGTAAGCAAAATTGTTTGGCTGTTGTGAAGGTGGGGTGGCTTGGTGCTATATCCAGTGCACGAAGAGTTCCCGTCTTGGTCCGGTCGTCATCCAATTGTTTTGGCTTTCTTGTTGCTGCTATCGGTAATAGCTCCTTTTCCATAGTAATTGTTGACGGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.31

Weight (kDa)

4.34

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 381
AccII CGCG 1 cut(s) 24
AciI CCGC 3 cut(s) 222, 399, 426
AclWI GGATC 1 cut(s) 409
AcsI RAATTY 1 cut(s) 338
AcuI CTGAAG 1 cut(s) 333
AfiI CCNNNNNNNGG 1 cut(s) 425
AgsI TTSAA 1 cut(s) 154
AjnI CCWGG 1 cut(s) 95
AluBI AGCT 3 cut(s) 332, 391, 558
AluI AGCT 3 cut(s) 332, 391, 558
Alw21I GWGCWC 1 cut(s) 487
Alw44I GTGCAC 1 cut(s) 483
AlwI GGATC 1 cut(s) 409
AoxI GGCC 1 cut(s) 89
ApaLI GTGCAC 1 cut(s) 483
ApeKI GCWGC 1 cut(s) 542
ApoI RAATTY 1 cut(s) 338
AspS9I GGNCC 1 cut(s) 505
AsuHPI GGTGA 2 cut(s) 308, 413
AvaII GGWCC 1 cut(s) 505
BaeGI GKGCMC 1 cut(s) 487
Bbv12I GWGCWC 1 cut(s) 487
BbvCI CCTCAGC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 529
BccI CCATC 2 cut(s) 224, 251
BciT130I CCWGG 1 cut(s) 97
BfaI CTAG 2 cut(s) 125, 396
BisI GCNGC 1 cut(s) 543
BlsI GCNGC 1 cut(s) 544
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 505
BmgT120I GGNCC 1 cut(s) 505
BmrFI CCNGG 1 cut(s) 97
BmsI GCATC 1 cut(s) 94
Bpu10I CCTNAGC 1 cut(s) 333
BsaBI GATNNNNATC 2 cut(s) 68, 108
BsaJI CCNNGG 3 cut(s) 95, 96, 419
BsaWI WCCGGW 1 cut(s) 507
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse1I ACTGG 1 cut(s) 480
Bse8I GATNNNNATC 2 cut(s) 68, 108
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 3 cut(s) 95, 96, 419
BseGI GGATG 1 cut(s) 515
BseJI GATNNNNATC 2 cut(s) 68, 108
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 480
BseRI GAGGAG 1 cut(s) 340
BseSI GKGCMC 1 cut(s) 487
BseXI GCAGC 1 cut(s) 529
Bsh1236I CGCG 1 cut(s) 24
Bsh1285I CGRYCG 1 cut(s) 512
BshFI GGCC 1 cut(s) 91
BsiEI CGRYCG 1 cut(s) 512
BsiHKAI GWGCWC 1 cut(s) 487
BsiSI CCGG 1 cut(s) 508
BslI CCNNNNNNNGG 1 cut(s) 425
BsnI GGCC 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 487
Bsp143I GATC 3 cut(s) 63, 109, 414
Bsp68I TCGCGA 1 cut(s) 24
BspACI CCGC 3 cut(s) 222, 399, 426
BspANI GGCC 1 cut(s) 91
BspCNI CTCAG 1 cut(s) 325
BspFNI CGCG 1 cut(s) 24
BspPI GGATC 1 cut(s) 409
BsrI ACTGG 1 cut(s) 480
BssECI CCNNGG 3 cut(s) 95, 96, 419
BssMI GATC 3 cut(s) 63, 109, 414
BssNAI GTATAC 1 cut(s) 382
Bst1107I GTATAC 1 cut(s) 382
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 2 cut(s) 148, 584
Bst6I CTCTTC 4 cut(s) 279, 294, 309, 484
BstDEI CTNAG 1 cut(s) 333
BstDSI CCRYGG 1 cut(s) 419
BstF5I GGATG 1 cut(s) 515
BstFNI CGCG 1 cut(s) 24
BstKTI GATC 3 cut(s) 66, 112, 417
BstMBI GATC 3 cut(s) 63, 109, 414
BstMCI CGRYCG 1 cut(s) 512
BstNI CCWGG 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 95
BstSLI GKGCMC 1 cut(s) 487
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 529
BstZ17I GTATAC 1 cut(s) 382
BsuRI GGCC 1 cut(s) 91
BtgI CCRYGG 1 cut(s) 419
BtgZI GCGATG 2 cut(s) 216, 279
BtsCI GGATG 1 cut(s) 515
BtsIMutI CAGTG 1 cut(s) 487
BtuMI TCGCGA 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 505
CviAII CATG 2 cut(s) 31, 40
CviJI RGCY 9 cut(s) 91, 124, 332, 347, 391, 446, 466, 531, 558
CviKI_1 RGCY 9 cut(s) 91, 124, 332, 347, 391, 446, 466, 531, 558
DdeI CTNAG 1 cut(s) 333
DpnI GATC 3 cut(s) 65, 111, 416
DpnII GATC 3 cut(s) 63, 109, 414
Eam1104I CTCTTC 4 cut(s) 279, 294, 309, 484
EarI CTCTTC 4 cut(s) 279, 294, 309, 484
Eco47I GGWCC 1 cut(s) 505
Eco57I CTGAAG 1 cut(s) 333
EcoRI GAATTC 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 95
FaeI CATG 2 cut(s) 34, 43
FatI CATG 2 cut(s) 30, 39
FblI GTMKAC 1 cut(s) 381
Fnu4HI GCNGC 1 cut(s) 543
FokI GGATG 1 cut(s) 502
Fsp4HI GCNGC 1 cut(s) 543
FspBI CTAG 2 cut(s) 125, 396
GluI GCNGC 1 cut(s) 543
HaeIII GGCC 1 cut(s) 91
HapII CCGG 1 cut(s) 508
Hin1II CATG 2 cut(s) 34, 43
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HinfI GANTC 1 cut(s) 308
HpaII CCGG 1 cut(s) 508
HphI GGTGA 2 cut(s) 308, 413
Hpy166II GTNNAC 3 cut(s) 382, 485, 580
Hpy188I TCNGA 2 cut(s) 229, 313
Hpy188III TCNNGA 2 cut(s) 23, 61
Hpy8I GTNNAC 3 cut(s) 382, 485, 580
HpyAV CCTTC 2 cut(s) 148, 448
HpyCH4III ACNGT 2 cut(s) 148, 584
HpyCH4V TGCA 1 cut(s) 485
HpyF3I CTNAG 1 cut(s) 333
Hsp92II CATG 2 cut(s) 34, 43
Kzo9I GATC 3 cut(s) 63, 109, 414
LmnI GCTCC 1 cut(s) 563
LpnPI CCDG 4 cut(s) 82, 109, 493, 521
Lsp1109I GCAGC 1 cut(s) 529
LweI GCATC 1 cut(s) 94
MaeI CTAG 2 cut(s) 125, 396
MaeIII GTNAC 1 cut(s) 401
MalI GATC 3 cut(s) 65, 111, 416
MboI GATC 3 cut(s) 63, 109, 414
MboII GAAGA 6 cut(s) 28, 113, 296, 311, 326, 501
MfeI CAATTG 1 cut(s) 520
MhlI GDGCHC 1 cut(s) 487
MluCI AATT 4 cut(s) 338, 436, 520, 573
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 5 cut(s) 102, 199, 318, 328, 364
MseI TTAA 1 cut(s) 276
MspI CCGG 1 cut(s) 508
MspR9I CCNGG 1 cut(s) 97
MunI CAATTG 1 cut(s) 520
MvaI CCWGG 1 cut(s) 97
MvnI CGCG 1 cut(s) 24
NdeII GATC 3 cut(s) 63, 109, 414
NlaIII CATG 2 cut(s) 34, 43
NmuCI GTSAC 1 cut(s) 401
NruI TCGCGA 1 cut(s) 24
PasI CCCWGGG 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PfeI GAWTC 1 cut(s) 308
PkrI GCNGC 1 cut(s) 544
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspPI GGNCC 1 cut(s) 505
RruI TCGCGA 1 cut(s) 24
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 1 cut(s) 543
Sau3AI GATC 3 cut(s) 63, 109, 414
Sau96I GGNCC 1 cut(s) 505
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 1 cut(s) 487
SetI ASST 6 cut(s) 159, 334, 393, 412, 459, 560
SfaNI GCATC 1 cut(s) 94
SinI GGWCC 1 cut(s) 505
Sse9I AATT 4 cut(s) 338, 436, 520, 573
SsiI CCGC 3 cut(s) 222, 399, 426
SspMI CTAG 2 cut(s) 125, 396
StyD4I CCNGG 1 cut(s) 95
TaaI ACNGT 2 cut(s) 148, 584
TasI AATT 4 cut(s) 338, 436, 520, 573
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 1 cut(s) 542
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 5 cut(s) 19, 28, 144, 255, 331
TspRI CASTG 1 cut(s) 487
VneI GTGCAC 1 cut(s) 483
VpaK11BI GGWCC 1 cut(s) 505
XapI RAATTY 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 381
XspI CTAG 2 cut(s) 125, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.