Rw5G026640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0013712
Physical Location & Seq
Reverse (-)
38629247 .. 38629615
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G026640.1

Sequence Viewer

Length: 369 bp
ATGGTAGTGGCAAAGTCAAATAGCGAGTTCGTGTTCTTCATGGTCACTGTTGTTTCTCTCACGATTAATATCGTGTTTGGGATTTTGAGGCCTCCCAGGGAAGATGCTGATCATTATGTTCGGCTAGATGAAGTGAAAGACTATACTGTATTGAAGGTAAGTGATGAAGATTGCGATGAGGATAACAATGAGTGCGGTTCTGATGGTTATGATGAAGATAATGATGACGATGGTAGCGAAGAGTCGGAGAGGAGAGCTGAGGAATTCATAGCCAAGCACGCAAGGAAATGGAGAGAGGATTTTGTATACGAGAAGCTCACGTACATGGCCTCTATAGAGTTGCAATCAGCTCTATCTAGCCCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

14.08

Weight (kDa)

4.32

Isoelectric Point (pI)

64.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 306
AciI CCGC 1 cut(s) 195
AcsI RAATTY 1 cut(s) 263
AfaI GTAC 1 cut(s) 323
AgsI TTSAA 1 cut(s) 154
AjnI CCWGG 1 cut(s) 95
AluBI AGCT 3 cut(s) 257, 316, 350
AluI AGCT 3 cut(s) 257, 316, 350
AoxI GGCC 2 cut(s) 89, 327
ApoI RAATTY 1 cut(s) 263
AseI ATTAAT 1 cut(s) 66
BarI GAAGNNNNNNTAC 2 cut(s) 305, 337
BbvCI CCTCAGC 1 cut(s) 258
BccI CCATC 2 cut(s) 197, 224
BciT130I CCWGG 1 cut(s) 97
BclI TGATCA 1 cut(s) 109
BfaI CTAG 2 cut(s) 125, 357
BfmI CTRYAG 1 cut(s) 333
Bme1390I CCNGG 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 97
BmsI GCATC 1 cut(s) 94
Bpu10I CCTNAGC 1 cut(s) 258
BsaAI YACGTR 1 cut(s) 321
BsaBI GATNNNNATC 2 cut(s) 68, 108
BsaJI CCNNGG 3 cut(s) 95, 96, 362
Bse8I GATNNNNATC 2 cut(s) 68, 108
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 3 cut(s) 95, 96, 362
BseJI GATNNNNATC 2 cut(s) 68, 108
BseMII CTCAG 1 cut(s) 249
BseRI GAGGAG 1 cut(s) 265
BshFI GGCC 2 cut(s) 91, 329
BsnI GGCC 2 cut(s) 91, 329
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 1 cut(s) 195
BspANI GGCC 2 cut(s) 91, 329
BspCNI CTCAG 1 cut(s) 250
BssECI CCNNGG 3 cut(s) 95, 96, 362
BssMI GATC 1 cut(s) 109
BssNAI GTATAC 1 cut(s) 307
BssT1I CCWWGG 1 cut(s) 362
Bst1107I GTATAC 1 cut(s) 307
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 2 cut(s) 49, 148
Bst6I CTCTTC 1 cut(s) 234
BstBAI YACGTR 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 1 cut(s) 258
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNI CCWGG 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 333
BstZ17I GTATAC 1 cut(s) 307
BsuRI GGCC 2 cut(s) 91, 329
BtgZI GCGATG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 1 cut(s) 279
Csp6I GTAC 1 cut(s) 322
CviAII CATG 2 cut(s) 40, 325
CviJI RGCY 8 cut(s) 91, 124, 257, 272, 316, 329, 350, 360
CviKI_1 RGCY 8 cut(s) 91, 124, 257, 272, 316, 329, 350, 360
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 1 cut(s) 258
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 362
Eco147I AGGCCT 1 cut(s) 91
EcoRI GAATTC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 362
FaeI CATG 2 cut(s) 43, 328
FaiI YATR 8 cut(s) 41, 117, 144, 210, 269, 307, 326, 335
FatI CATG 2 cut(s) 39, 324
FbaI TGATCA 1 cut(s) 109
FblI GTMKAC 1 cut(s) 306
FspBI CTAG 2 cut(s) 125, 357
HaeIII GGCC 2 cut(s) 91, 329
Hin1II CATG 2 cut(s) 43, 328
HinfI GANTC 1 cut(s) 242
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 2 cut(s) 202, 247
Hpy188III TCNNGA 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 307
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 2 cut(s) 49, 148
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 1 cut(s) 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 320
Hsp92II CATG 2 cut(s) 43, 328
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 2 cut(s) 82, 109
LweI GCATC 1 cut(s) 94
MaeI CTAG 2 cut(s) 125, 357
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 1 cut(s) 43
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 5 cut(s) 28, 113, 179, 227, 251
MluCI AATT 1 cut(s) 263
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 7 cut(s) 81, 102, 172, 243, 253, 289, 340
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 97
MvaI CCWGG 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 278
NdeII GATC 1 cut(s) 109
NlaIII CATG 2 cut(s) 43, 328
NmuCI GTSAC 1 cut(s) 43
PasI CCCWGGG 1 cut(s) 96
PceI AGGCCT 1 cut(s) 91
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
Ppu21I YACGTR 1 cut(s) 321
PshBI ATTAAT 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 1 cut(s) 66
Sau3AI GATC 1 cut(s) 109
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 97
SetI ASST 6 cut(s) 159, 259, 318, 323, 352, 368
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 333
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 1 cut(s) 263
SseBI AGGCCT 1 cut(s) 91
SsiI CCGC 1 cut(s) 195
SspMI CTAG 2 cut(s) 125, 357
StuI AGGCCT 1 cut(s) 91
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 362
TaaI ACNGT 2 cut(s) 49, 148
TaiI ACGT 1 cut(s) 323
TasI AATT 1 cut(s) 263
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 5 cut(s) 28, 144, 180, 228, 256
TspRI CASTG 1 cut(s) 52
VspI ATTAAT 1 cut(s) 66
XapI RAATTY 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 2 cut(s) 125, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.