No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g11940 |
| malus_domestica | MD02G1203500.v1.1 MD07G1122500.v1.1 |
| pyrus_communis | pycom07g11080 |
| rosa_laevigata | RLG00000028465 RLG00000028466 RLG00000034132 |
| rosa_roxburghii | Rroxscaffold_4G00304650 |
| rosa_rugosa | Rorug01G0212900 |
| rosa_samantha | Rh1AG227100 Rh1BG196300 Rh1CG212100 Rh1DG224300 Rh5AG286800 Rh5CG323500 |
| rosa_wichuraiana | Rw1G019640 Rw1G019670 Rw5G026640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 407 |
| AcuI | CTGAAG | 2 cut(s) | 202, 438 |
| AfaI | GTAC | 1 cut(s) | 27 |
| AgsI | TTSAA | 3 cut(s) | 242, 267, 290 |
| AleI | CACNNNNGTG | 1 cut(s) | 203 |
| AluBI | AGCT | 4 cut(s) | 216, 238, 543, 549 |
| AluI | AGCT | 4 cut(s) | 216, 238, 543, 549 |
| Alw26I | GTCTC | 1 cut(s) | 93 |
| AoxI | GGCC | 1 cut(s) | 221 |
| ApoI | RAATTY | 1 cut(s) | 407 |
| BbsI | GAAGAC | 1 cut(s) | 369 |
| BccI | CCATC | 5 cut(s) | 28, 146, 232, 344, 371 |
| BclI | TGATCA | 1 cut(s) | 502 |
| BcoDI | GTCTC | 1 cut(s) | 93 |
| BfaI | CTAG | 4 cut(s) | 50, 209, 546, 550 |
| BfmI | CTRYAG | 1 cut(s) | 307 |
| BmcAI | AGTACT | 1 cut(s) | 27 |
| BmiI | GGNNCC | 1 cut(s) | 346 |
| BpiI | GAAGAC | 1 cut(s) | 369 |
| Bse1I | ACTGG | 1 cut(s) | 33 |
| BseGI | GGATG | 2 cut(s) | 224, 536 |
| BseMII | CTCAG | 1 cut(s) | 441 |
| BseNI | ACTGG | 1 cut(s) | 33 |
| BseRI | GAGGAG | 3 cut(s) | 338, 457, 503 |
| BshFI | GGCC | 1 cut(s) | 223 |
| BsmAI | GTCTC | 1 cut(s) | 93 |
| BsnI | GGCC | 1 cut(s) | 223 |
| Bsp143I | GATC | 1 cut(s) | 502 |
| BspANI | GGCC | 1 cut(s) | 223 |
| BspCNI | CTCAG | 1 cut(s) | 442 |
| BspLI | GGNNCC | 1 cut(s) | 346 |
| BspQI | GCTCTTC | 1 cut(s) | 228 |
| BsrI | ACTGG | 1 cut(s) | 33 |
| BssMI | GATC | 1 cut(s) | 502 |
| Bst6I | CTCTTC | 2 cut(s) | 123, 228 |
| BstDEI | CTNAG | 1 cut(s) | 450 |
| BstF5I | GGATG | 2 cut(s) | 224, 536 |
| BstKTI | GATC | 1 cut(s) | 505 |
| BstMAI | GTCTC | 1 cut(s) | 93 |
| BstMBI | GATC | 1 cut(s) | 502 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 14 |
| BstSFI | CTRYAG | 1 cut(s) | 307 |
| BstV2I | GAAGAC | 1 cut(s) | 369 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 145 |
| BsuRI | GGCC | 1 cut(s) | 223 |
| BtsCI | GGATG | 2 cut(s) | 224, 536 |
| BtsI | GCAGTG | 1 cut(s) | 337 |
| BtsIMutI | CAGTG | 1 cut(s) | 337 |
| Csp6I | GTAC | 1 cut(s) | 26 |
| CviAII | CATG | 1 cut(s) | 178 |
| CviJI | RGCY | 9 cut(s) | 98, 167, 216, 223, 238, 464, 518, 543, 549 |
| CviKI_1 | RGCY | 9 cut(s) | 98, 167, 216, 223, 238, 464, 518, 543, 549 |
| CviQI | GTAC | 1 cut(s) | 26 |
| DdeI | CTNAG | 1 cut(s) | 450 |
| DpnI | GATC | 1 cut(s) | 504 |
| DpnII | GATC | 1 cut(s) | 502 |
| Eam1104I | CTCTTC | 2 cut(s) | 123, 228 |
| EarI | CTCTTC | 2 cut(s) | 123, 228 |
| Eco57I | CTGAAG | 2 cut(s) | 202, 438 |
| FaeI | CATG | 1 cut(s) | 181 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 222, 254 |
| FatI | CATG | 1 cut(s) | 177 |
| FauNDI | CATATG | 1 cut(s) | 507 |
| FbaI | TGATCA | 1 cut(s) | 502 |
| FokI | GGATG | 2 cut(s) | 211, 523 |
| FspBI | CTAG | 4 cut(s) | 50, 209, 546, 550 |
| HaeIII | GGCC | 1 cut(s) | 223 |
| Hin1II | CATG | 1 cut(s) | 181 |
| HinfI | GANTC | 4 cut(s) | 134, 157, 263, 527 |
| Hpy188I | TCNGA | 1 cut(s) | 349 |
| Hpy99I | CGWCG | 1 cut(s) | 392 |
| HpyAV | CCTTC | 1 cut(s) | 88 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 14 |
| HpyF3I | CTNAG | 1 cut(s) | 450 |
| Hsp92II | CATG | 1 cut(s) | 181 |
| Ksp22I | TGATCA | 1 cut(s) | 502 |
| Kzo9I | GATC | 1 cut(s) | 502 |
| LguI | GCTCTTC | 1 cut(s) | 228 |
| LmnI | GCTCC | 1 cut(s) | 213 |
| LpnPI | CCDG | 2 cut(s) | 14, 205 |
| MaeI | CTAG | 4 cut(s) | 50, 209, 546, 550 |
| MaeIII | GTNAC | 5 cut(s) | 302, 383, 431, 469, 528 |
| MalI | GATC | 1 cut(s) | 504 |
| MboI | GATC | 1 cut(s) | 502 |
| MfeI | CAATTG | 1 cut(s) | 201 |
| MluCI | AATT | 2 cut(s) | 201, 407 |
| MlyI | GAGTC | 1 cut(s) | 536 |
| MnlI | CCTC | 6 cut(s) | 69, 316, 319, 435, 445, 481 |
| MseI | TTAA | 1 cut(s) | 183 |
| MslI | CAYNNNNRTG | 2 cut(s) | 143, 203 |
| MunI | CAATTG | 1 cut(s) | 201 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 14 |
| NdeI | CATATG | 1 cut(s) | 507 |
| NdeII | GATC | 1 cut(s) | 502 |
| NlaIII | CATG | 1 cut(s) | 181 |
| NlaIV | GGNNCC | 1 cut(s) | 346 |
| NmuCI | GTSAC | 4 cut(s) | 383, 431, 469, 528 |
| OliI | CACNNNNGTG | 1 cut(s) | 203 |
| PciSI | GCTCTTC | 1 cut(s) | 228 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 138 |
| PfeI | GAWTC | 3 cut(s) | 134, 157, 263 |
| PleI | GAGTC | 1 cut(s) | 535 |
| PpsI | GAGTC | 1 cut(s) | 535 |
| PspN4I | GGNNCC | 1 cut(s) | 346 |
| RsaI | GTAC | 1 cut(s) | 27 |
| RsaNI | GTAC | 1 cut(s) | 26 |
| RseI | CAYNNNNRTG | 2 cut(s) | 143, 203 |
| SapI | GCTCTTC | 1 cut(s) | 228 |
| SaqAI | TTAA | 1 cut(s) | 183 |
| Sau3AI | GATC | 1 cut(s) | 502 |
| ScaI | AGTACT | 1 cut(s) | 27 |
| SchI | GAGTC | 1 cut(s) | 536 |
| SetI | ASST | 6 cut(s) | 131, 218, 240, 288, 545, 551 |
| SfcI | CTRYAG | 1 cut(s) | 307 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 143, 203 |
| Sse9I | AATT | 2 cut(s) | 201, 407 |
| SspMI | CTAG | 4 cut(s) | 50, 209, 546, 550 |
| TaqI | TCGA | 2 cut(s) | 155, 521 |
| TasI | AATT | 2 cut(s) | 201, 407 |
| TatI | WGTACW | 1 cut(s) | 25 |
| TfiI | GAWTC | 3 cut(s) | 134, 157, 263 |
| Tru1I | TTAA | 1 cut(s) | 183 |
| Tru9I | TTAA | 1 cut(s) | 183 |
| TscAI | CASTG | 1 cut(s) | 337 |
| TseFI | GTSAC | 4 cut(s) | 383, 431, 469, 528 |
| Tsp45I | GTSAC | 4 cut(s) | 383, 431, 469, 528 |
| TspDTI | ATGAA | 5 cut(s) | 17, 166, 264, 375, 448 |
| TspRI | CASTG | 1 cut(s) | 337 |
| XapI | RAATTY | 1 cut(s) | 407 |
| XspI | CTAG | 4 cut(s) | 50, 209, 546, 550 |
| ZrmI | AGTACT | 1 cut(s) | 27 |