RLG00000034132

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013712
Physical Location & Seq
Reverse (-)
37139409 .. 37142543
3135 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034132

Sequence Viewer

Length: 561 bp
ATGGTCTACTTCCAACAATATCAATATCTGTTCTTCATAGTCACTGTTGTTTCTCTCACGATTAGTATCGTGTTTGGGATTTTGAGGCCTCCCAAGGAAGATGTTGATCATTATGTTCGGCTAGATGAAGTGAAAGACTATACTGTATTGAAGGTAAGTGCTGAAGATTACTATTACTACTACAAATGTAGCGATTGCAATGAGGATAACAATGAGTGCGGTTCTGATGGTTATGATGAAGATAATGATGACGATGGTAGCGATGACGATATTAATAGTGAAGAGTTTTATGGTGAAGAGATTGATAGTGAAGAGTTGGAGAGGAGAGCTGAGGAATTCATAGCCAAGCACACAAGGAAATGGAGAGAGGATTTTGCATACGAGAAGCTCACGTGGGGTGGCTTGGTGCTATATCCAGTGCACGAAGGTACATTGGGGATTATTGCTCTTCAGAGTTCCCGTCTTGATCCGGTTGGCATCCAATTGCATGCATGTTTCGGCTTTCTTGTTGCTGCTATCGGTGATAGCTCCTTTTCCATAGTAATTGTTCACGGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

21.41

Weight (kDa)

4.25

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 6
AciI CCGC 1 cut(s) 219
AclWI GGATC 1 cut(s) 461
AcsI RAATTY 1 cut(s) 335
AcuI CTGAAG 2 cut(s) 183, 434
AcvI CACGTG 1 cut(s) 393
AfaI GTAC 1 cut(s) 430
AgsI TTSAA 1 cut(s) 151
AluBI AGCT 3 cut(s) 329, 388, 528
AluI AGCT 3 cut(s) 329, 388, 528
Alw21I GWGCWC 1 cut(s) 423
Alw44I GTGCAC 1 cut(s) 419
AlwI GGATC 1 cut(s) 461
AoxI GGCC 1 cut(s) 86
ApaLI GTGCAC 1 cut(s) 419
ApeKI GCWGC 1 cut(s) 512
ApoI RAATTY 1 cut(s) 335
AseI ATTAAT 1 cut(s) 273
AsuHPI GGTGA 2 cut(s) 305, 533
BaeGI GKGCMC 1 cut(s) 423
BbrPI CACGTG 1 cut(s) 393
Bbv12I GWGCWC 1 cut(s) 423
BbvCI CCTCAGC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 499
BccI CCATC 2 cut(s) 221, 248
BclI TGATCA 1 cut(s) 106
BfaI CTAG 1 cut(s) 122
BisI GCNGC 1 cut(s) 513
BlsI GCNGC 1 cut(s) 514
BmsI GCATC 1 cut(s) 486
Bpu10I CCTNAGC 1 cut(s) 330
BsaAI YACGTR 1 cut(s) 393
BsaBI GATNNNNATC 2 cut(s) 65, 105
BsaJI CCNNGG 1 cut(s) 93
BsaWI WCCGGW 1 cut(s) 469
Bse1I ACTGG 1 cut(s) 416
Bse3DI GCAATG 1 cut(s) 205
Bse8I GATNNNNATC 2 cut(s) 65, 105
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 477
BseJI GATNNNNATC 2 cut(s) 65, 105
BseMI GCAATG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 1 cut(s) 416
BseRI GAGGAG 1 cut(s) 337
BseSI GKGCMC 1 cut(s) 423
BseXI GCAGC 1 cut(s) 499
BshFI GGCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 423
BsiSI CCGG 1 cut(s) 470
BsnI GGCC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 2 cut(s) 106, 466
BspACI CCGC 1 cut(s) 219
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 322
BspPI GGATC 1 cut(s) 461
BspQI GCTCTTC 1 cut(s) 453
BsrDI GCAATG 1 cut(s) 205
BsrI ACTGG 1 cut(s) 416
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 2 cut(s) 106, 466
BssT1I CCWWGG 1 cut(s) 93
Bst4CI ACNGT 3 cut(s) 46, 145, 554
Bst6I CTCTTC 4 cut(s) 276, 291, 306, 453
BstBAI YACGTR 1 cut(s) 393
BstC8I GCNNGC 1 cut(s) 489
BstDEI CTNAG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 477
BstKTI GATC 2 cut(s) 109, 469
BstMBI GATC 2 cut(s) 106, 466
BstNSI RCATGY 2 cut(s) 491, 495
BstSLI GKGCMC 1 cut(s) 423
BstV1I GCAGC 1 cut(s) 499
BsuRI GGCC 1 cut(s) 88
BtgZI GCGATG 1 cut(s) 276
BtsCI GGATG 1 cut(s) 477
BtsIMutI CAGTG 2 cut(s) 42, 423
Cac8I GCNNGC 1 cut(s) 489
Csp6I GTAC 1 cut(s) 429
CviAII CATG 2 cut(s) 488, 492
CviJI RGCY 8 cut(s) 88, 121, 329, 344, 388, 402, 501, 528
CviKI_1 RGCY 8 cut(s) 88, 121, 329, 344, 388, 402, 501, 528
CviQI GTAC 1 cut(s) 429
DdeI CTNAG 1 cut(s) 330
DpnI GATC 2 cut(s) 108, 468
DpnII GATC 2 cut(s) 106, 466
Eam1104I CTCTTC 4 cut(s) 276, 291, 306, 453
EarI CTCTTC 4 cut(s) 276, 291, 306, 453
Eco130I CCWWGG 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 88
Eco57I CTGAAG 2 cut(s) 183, 434
Eco72I CACGTG 1 cut(s) 393
EcoRI GAATTC 1 cut(s) 335
EcoT14I CCWWGG 1 cut(s) 93
EcoT22I ATGCAT 1 cut(s) 493
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 2 cut(s) 491, 495
FatI CATG 2 cut(s) 487, 491
FbaI TGATCA 1 cut(s) 106
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 1 cut(s) 513
FokI GGATG 1 cut(s) 464
Fsp4HI GCNGC 1 cut(s) 513
FspBI CTAG 1 cut(s) 122
GluI GCNGC 1 cut(s) 513
HaeIII GGCC 1 cut(s) 88
HapII CCGG 1 cut(s) 470
Hin1II CATG 2 cut(s) 491, 495
HpaII CCGG 1 cut(s) 470
HphI GGTGA 2 cut(s) 305, 533
Hpy166II GTNNAC 3 cut(s) 7, 421, 550
Hpy188I TCNGA 2 cut(s) 226, 453
Hpy188III TCNNGA 2 cut(s) 58, 464
Hpy8I GTNNAC 3 cut(s) 7, 421, 550
HpyAV CCTTC 2 cut(s) 145, 419
HpyCH4III ACNGT 3 cut(s) 46, 145, 554
HpyCH4IV ACGT 1 cut(s) 392
HpyCH4V TGCA 5 cut(s) 198, 377, 421, 487, 491
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 1 cut(s) 392
Hsp92II CATG 2 cut(s) 491, 495
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 2 cut(s) 106, 466
LguI GCTCTTC 1 cut(s) 453
LmnI GCTCC 1 cut(s) 533
LpnPI CCDG 2 cut(s) 429, 483
Lsp1109I GCAGC 1 cut(s) 499
LweI GCATC 1 cut(s) 486
MaeI CTAG 1 cut(s) 122
MaeII ACGT 1 cut(s) 392
MaeIII GTNAC 1 cut(s) 40
MalI GATC 2 cut(s) 108, 468
MboI GATC 2 cut(s) 106, 466
MboII GAAGA 8 cut(s) 25, 110, 176, 251, 293, 308, 323, 440
MfeI CAATTG 1 cut(s) 482
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 3 cut(s) 335, 482, 543
MmeI TCCRAC 2 cut(s) 37, 297
MnlI CCTC 6 cut(s) 78, 99, 196, 315, 325, 361
Mph1103I ATGCAT 1 cut(s) 493
MseI TTAA 1 cut(s) 273
MspI CCGG 1 cut(s) 470
MunI CAATTG 1 cut(s) 482
NdeII GATC 2 cut(s) 106, 466
NlaIII CATG 2 cut(s) 491, 495
NmuCI GTSAC 1 cut(s) 40
NsiI ATGCAT 1 cut(s) 493
NspI RCATGY 2 cut(s) 491, 495
PaeI GCATGC 1 cut(s) 491
PceI AGGCCT 1 cut(s) 88
PciSI GCTCTTC 1 cut(s) 453
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PkrI GCNGC 1 cut(s) 514
PmaCI CACGTG 1 cut(s) 393
PmlI CACGTG 1 cut(s) 393
Ppu21I YACGTR 1 cut(s) 393
PshBI ATTAAT 1 cut(s) 273
PspCI CACGTG 1 cut(s) 393
RsaI GTAC 1 cut(s) 430
RsaNI GTAC 1 cut(s) 429
SapI GCTCTTC 1 cut(s) 453
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 1 cut(s) 513
Sau3AI GATC 2 cut(s) 106, 466
SduI GDGCHC 1 cut(s) 423
SetI ASST 6 cut(s) 156, 331, 390, 395, 430, 530
SfaNI GCATC 1 cut(s) 486
SphI GCATGC 1 cut(s) 491
Sse9I AATT 3 cut(s) 335, 482, 543
SseBI AGGCCT 1 cut(s) 88
SsiI CCGC 1 cut(s) 219
SspMI CTAG 1 cut(s) 122
StuI AGGCCT 1 cut(s) 88
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 3 cut(s) 46, 145, 554
TaiI ACGT 1 cut(s) 395
TasI AATT 3 cut(s) 335, 482, 543
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 2 cut(s) 49, 423
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 1 cut(s) 512
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 4 cut(s) 25, 141, 252, 328
TspRI CASTG 2 cut(s) 49, 423
VneI GTGCAC 1 cut(s) 419
VspI ATTAAT 1 cut(s) 273
XapI RAATTY 1 cut(s) 335
XceI RCATGY 2 cut(s) 491, 495
XmiI GTMKAC 1 cut(s) 6
XspI CTAG 1 cut(s) 122
Zsp2I ATGCAT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.