FvH4_7g13001
MYB Family

cheY-homologous receiver domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014797
Physical Location & Seq
Forward (+)
11735544 .. 11738094
2551 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13001.t1

Sequence Viewer

Length: 585 bp
ATGAAGACTAGTCCAAAACCAGCTACATGTTTCAGTGTCTTGGTTGTTGATAGTGATTCTGAATATCTATCAACGCTGTCAAATATGCTATGCAGCTTACGATATAAAGTTTTGACAGCTAAAGGAGGTAATGAGGCATTGTATACTGCTCACAAGAAGAAAGATGAGCTTCACATTGTGTTAACAGAGGCACACTTGCCTGACATGACAAAATATGAGCTTCTAAACAAATTGAAGGCAGTTTCCGATTTACCTGTTGTTATTATGTCTGATGATGATGATAGTGGTGCTAAATTAGATTTTCTGTTAAGAGGGACCATCTATTACCTTGTAAAGCCACTTACAATGGATAATATCACGAACCTGTGGCAGTTCTTTTTCCAAACAAAGAAAACTGCCTTGACAGACACAAGTAATGCTCATGCTGACTCAGAAGGAAGGTTAATGAATTACAAAAGACAAAGGTCAGAAGGAATGGACTATTACCAGGAGAAATTCAGCAATGGTTCAACGGCCTTCACGACGCGAAGGGTGATATGGACTACTGAGCTGCGTCATAGGTTCAGCAAGTTGTCAACCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Myb_DNA-binding Response_reg

Protein Analysis

195

Amino Acids

22.2

Weight (kDa)

8.93

Isoelectric Point (pI)

36.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 13 - 121 8.1e-13 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014797)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13001
malus_domestica MD01G1047800.v1.1
prunus_persica Prupe.2G154100_v2.0.a1
pyrus_communis pycom01g07350 pycom07g11960
rosa_chinensis RchiOBHm_Chr1g0352151
rosa_laevigata RLG00000028356
rosa_roxburghii Rroxscaffold_2G00102750
rosa_rugosa Rorug01G0225100
rosa_samantha Rh1AG239100 Rh1AG239200 Rh1AG239300 Rh1BG210100 Rh1CG223700 Rh1DG236800 Rh7AG266700 Rh7CG284000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 143
AccII CGCG 1 cut(s) 526
AcsI RAATTY 1 cut(s) 494
AdeI CACNNNGTG 1 cut(s) 178
AflIII ACRYGT 1 cut(s) 26
AgsI TTSAA 2 cut(s) 235, 510
AhlI ACTAGT 1 cut(s) 8
AjnI CCWGG 1 cut(s) 486
AluBI AGCT 6 cut(s) 23, 96, 119, 169, 220, 550
AluI AGCT 6 cut(s) 23, 96, 119, 169, 220, 550
AoxI GGCC 1 cut(s) 513
ApeKI GCWGC 2 cut(s) 93, 550
ApoI RAATTY 1 cut(s) 494
AspS9I GGNCC 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 544
AvaII GGWCC 1 cut(s) 315
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 105, 537
BccI CCATC 1 cut(s) 326
BceAI ACGGC 1 cut(s) 528
BciT130I CCWGG 1 cut(s) 488
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 1 cut(s) 9
BisI GCNGC 2 cut(s) 94, 551
BlsI GCNGC 2 cut(s) 95, 552
Bme1390I CCNGG 1 cut(s) 488
Bme18I GGWCC 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 1 cut(s) 488
BoxI GACNNNNGTC 1 cut(s) 463
BpiI GAAGAC 1 cut(s) 11
Bse3DI GCAATG 1 cut(s) 508
BseBI CCWGG 1 cut(s) 488
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 2 cut(s) 444, 537
BseXI GCAGC 2 cut(s) 105, 537
Bsh1236I CGCG 1 cut(s) 526
BshFI GGCC 1 cut(s) 515
BslFI GGGAC 1 cut(s) 328
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 1 cut(s) 515
BspANI GGCC 1 cut(s) 515
BspCNI CTCAG 2 cut(s) 443, 538
BspFNI CGCG 1 cut(s) 526
BspLI GGNNCC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 508
BssNAI GTATAC 1 cut(s) 144
Bst1107I GTATAC 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 488
BstDEI CTNAG 2 cut(s) 430, 546
BstFNI CGCG 1 cut(s) 526
BstNI CCWGG 1 cut(s) 488
BstNSI RCATGY 1 cut(s) 30
BstPAI GACNNNNGTC 1 cut(s) 463
BstSCI CCNGG 1 cut(s) 486
BstUI CGCG 1 cut(s) 526
BstV1I GCAGC 2 cut(s) 105, 537
BstV2I GAAGAC 1 cut(s) 11
BstZ17I GTATAC 1 cut(s) 144
BsuRI GGCC 1 cut(s) 515
BtsIMutI CAGTG 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 315
CseI GACGC 2 cut(s) 532, 542
CviAII CATG 3 cut(s) 27, 205, 422
CviJI RGCY 8 cut(s) 23, 96, 119, 169, 220, 337, 515, 550
CviKI_1 RGCY 8 cut(s) 23, 96, 119, 169, 220, 337, 515, 550
DdeI CTNAG 2 cut(s) 430, 546
DraIII CACNNNGTG 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 486
FaeI CATG 3 cut(s) 30, 208, 425
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FaqI GGGAC 1 cut(s) 328
FatI CATG 3 cut(s) 26, 204, 421
FblI GTMKAC 1 cut(s) 143
Fnu4HI GCNGC 2 cut(s) 94, 551
Fsp4HI GCNGC 2 cut(s) 94, 551
FspBI CTAG 1 cut(s) 9
GluI GCNGC 2 cut(s) 94, 551
HaeIII GGCC 1 cut(s) 515
HgaI GACGC 2 cut(s) 532, 542
Hin1II CATG 3 cut(s) 30, 208, 425
HincII GTYRAC 2 cut(s) 183, 576
HindII GTYRAC 2 cut(s) 183, 576
HinfI GANTC 2 cut(s) 56, 428
HpaI GTTAAC 1 cut(s) 183
HphI GGTGA 1 cut(s) 544
Hpy166II GTNNAC 3 cut(s) 144, 183, 576
Hpy188I TCNGA 5 cut(s) 61, 247, 271, 433, 469
Hpy188III TCNNGA 2 cut(s) 358, 520
Hpy8I GTNNAC 3 cut(s) 144, 183, 576
Hpy99I CGWCG 1 cut(s) 526
HpyAV CCTTC 6 cut(s) 229, 428, 432, 464, 522, 526
HpyCH4V TGCA 1 cut(s) 93
HpyF3I CTNAG 2 cut(s) 430, 546
Hsp92II CATG 3 cut(s) 30, 208, 425
KspAI GTTAAC 1 cut(s) 183
LpnPI CCDG 6 cut(s) 33, 213, 267, 377, 473, 500
Lsp1109I GCAGC 2 cut(s) 105, 537
MaeI CTAG 1 cut(s) 9
MboII GAAGA 2 cut(s) 16, 169
MluCI AATT 4 cut(s) 230, 293, 448, 494
MlyI GAGTC 1 cut(s) 422
MnlI CCTC 4 cut(s) 119, 127, 181, 305
MseI TTAA 3 cut(s) 182, 308, 443
MspR9I CCNGG 1 cut(s) 488
MvaI CCWGG 1 cut(s) 488
MvnI CGCG 1 cut(s) 526
NlaIII CATG 3 cut(s) 30, 208, 425
NlaIV GGNNCC 1 cut(s) 316
NspI RCATGY 1 cut(s) 30
PciI ACATGT 1 cut(s) 26
PcsI WCGNNNNNNNCGW 1 cut(s) 518
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 2 cut(s) 95, 552
PleI GAGTC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 422
PscI ACATGT 1 cut(s) 26
PshAI GACNNNNGTC 1 cut(s) 463
Psp6I CCWGG 1 cut(s) 486
PspGI CCWGG 1 cut(s) 486
PspN4I GGNNCC 1 cut(s) 316
PspPI GGNCC 1 cut(s) 315
SaqAI TTAA 3 cut(s) 182, 308, 443
SatI GCNGC 2 cut(s) 94, 551
Sau96I GGNCC 1 cut(s) 315
SchI GAGTC 1 cut(s) 422
ScrFI CCNGG 1 cut(s) 488
SinI GGWCC 1 cut(s) 315
SpeI ACTAGT 1 cut(s) 8
Sse9I AATT 4 cut(s) 230, 293, 448, 494
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 486
TasI AATT 4 cut(s) 230, 293, 448, 494
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 3 cut(s) 182, 308, 443
Tru9I TTAA 3 cut(s) 182, 308, 443
TscAI CASTG 1 cut(s) 40
TseI GCWGC 2 cut(s) 93, 550
TspDTI ATGAA 2 cut(s) 17, 461
TspRI CASTG 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 315
XapI RAATTY 1 cut(s) 494
XceI RCATGY 1 cut(s) 30
XmiI GTMKAC 1 cut(s) 143
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.