Rh1AG239300
MYB Family

cheY-homologous receiver domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0014797
Physical Location & Seq
Forward (+)
44928790 .. 44929638
849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG239300.1

Sequence Viewer

Length: 849 bp
ATGTTGTTTTTGCAGAAATATCGCCACTCCTTGAGGCGGGAACAATTAGCAATTGAAAAGAGAAGGATCAGAGCTTCCAAATCAGCAAGTTTTCAACCAAGAAAATCTGCATCAACATTTAATTTTCAAGGAGAATTTCCCCAACTCCCAAATCTGTACTTCACATCCACACCATATCAACCAGAACTCAGAAGCCATTTTCTGGAGGACCTCAATAGTCAAATGCCCACTAGACCTGCCTTTGGTTCTGAAGATATTCCTATTCATGTGGACTCAAGTAGTAATGAGACATCAAATAAAAAATATGGGCAACCAACTCAAAGCAATCAGCTTGATTATCGTTATTTTAATGCTGAGAAAATTGGACCAGGTCAGAGCAGCAGCAACATGGATTTGGCAGCTGGCTTTGGACATGTTGAAAATTTTTTCAGGCAAGATATTTTTCAGGACCAGAACAAGAACTTCTCTGATGTTGGTGATTTTGGTCATCAAAATGCAACAGATTGCCCAATACTTCATAATTTTATACAACAAAAAGAGCAACAGCAGCCTTCACCACCACCACCACCACCTCCAAAACCACAAGACCAAGAAGAATATAACAGTTTTGGGGAATTTGATCCACACATTCTGCTGTCACCCCTACTAGCATCACAGGAGCAAGAAGAATATAACATTTTTGGGGAATTTGATCCACACAGTCTGCTGTCACCCCTACCAGGATCACAGGAGCAAGAAGAACATGATATCTTTGGGTTTGAAAGAGAAGAAAGTGATGACTTATTTAACTTTGCAGAAGAGGACACCATTCAAGTGTTTGATGATGTGGATTCCGATGATTTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Myb_DNA-binding Response_reg

Protein Analysis

282

Amino Acids

32.54

Weight (kDa)

4.55

Isoelectric Point (pI)

69.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014797)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13001
malus_domestica MD01G1047800.v1.1
prunus_persica Prupe.2G154100_v2.0.a1
pyrus_communis pycom01g07350 pycom07g11960
rosa_chinensis RchiOBHm_Chr1g0352151
rosa_laevigata RLG00000028356
rosa_roxburghii Rroxscaffold_2G00102750
rosa_rugosa Rorug01G0225100
rosa_samantha Rh1AG239100 Rh1AG239200 Rh1AG239300 Rh1BG210100 Rh1CG223700 Rh1DG236800 Rh7AG266700 Rh7CG284000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 244
AccB7I CCANNNNNTGG 1 cut(s) 202
AciI CCGC 1 cut(s) 37
AclWI GGATC 4 cut(s) 74, 614, 686, 730
AcsI RAATTY 4 cut(s) 134, 421, 614, 686
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 4 cut(s) 36, 202, 242, 719
AflIII ACRYGT 1 cut(s) 412
AgsI TTSAA 6 cut(s) 56, 95, 128, 419, 761, 812
AjnI CCWGG 2 cut(s) 367, 718
AluBI AGCT 3 cut(s) 74, 331, 401
AluI AGCT 3 cut(s) 74, 331, 401
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 4 cut(s) 74, 614, 686, 730
ApeKI GCWGC 4 cut(s) 378, 381, 398, 547
ApoI RAATTY 4 cut(s) 134, 421, 614, 686
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 3 cut(s) 208, 365, 448
AsuHPI GGTGA 4 cut(s) 488, 546, 630, 702
AvaII GGWCC 3 cut(s) 208, 365, 448
BbvI GCAGC 4 cut(s) 390, 393, 410, 559
BcgI CGANNNNNNTGC 1 cut(s) 36
BciT130I CCWGG 2 cut(s) 369, 720
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 2 cut(s) 231, 647
BfuAI ACCTGC 1 cut(s) 244
BisI GCNGC 4 cut(s) 379, 382, 399, 548
BlsI GCNGC 4 cut(s) 380, 383, 400, 549
Bme1390I CCNGG 2 cut(s) 369, 720
Bme18I GGWCC 3 cut(s) 208, 365, 448
BmgT120I GGNCC 3 cut(s) 208, 365, 448
BmrFI CCNGG 2 cut(s) 369, 720
BmsI GCATC 2 cut(s) 119, 659
BpmI CTGGAG 1 cut(s) 224
BpuEI CTTGAG 2 cut(s) 52, 259
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 202, 242, 719
BseBI CCWGG 2 cut(s) 369, 720
BseGI GGATG 1 cut(s) 164
BseLI CCNNNNNNNGG 4 cut(s) 36, 202, 242, 719
BseMII CTCAG 2 cut(s) 202, 345
BseXI GCAGC 4 cut(s) 390, 393, 410, 559
BslI CCNNNNNNNGG 4 cut(s) 36, 202, 242, 719
BsmAI GTCTC 1 cut(s) 281
Bsp143I GATC 4 cut(s) 66, 619, 691, 722
BspACI CCGC 1 cut(s) 37
BspCNI CTCAG 2 cut(s) 201, 346
BspMI ACCTGC 1 cut(s) 244
BspPI GGATC 4 cut(s) 74, 614, 686, 730
BssMI GATC 4 cut(s) 66, 619, 691, 722
Bst2UI CCWGG 2 cut(s) 369, 720
Bst4CI ACNGT 2 cut(s) 605, 701
Bst6I CTCTTC 1 cut(s) 792
BstC8I GCNNGC 1 cut(s) 403
BstDEI CTNAG 2 cut(s) 188, 354
BstF5I GGATG 1 cut(s) 164
BstKTI GATC 4 cut(s) 69, 622, 694, 725
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 4 cut(s) 66, 619, 691, 722
BstMWI GCNNNNNNNGC 1 cut(s) 547
BstNI CCWGG 2 cut(s) 369, 720
BstNSI RCATGY 1 cut(s) 416
BstSCI CCNGG 2 cut(s) 367, 718
BstV1I GCAGC 4 cut(s) 390, 393, 410, 559
BtsCI GGATG 1 cut(s) 164
BveI ACCTGC 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 403
Cfr13I GGNCC 3 cut(s) 208, 365, 448
CsiI ACCWGGT 1 cut(s) 367
Csp6I GTAC 1 cut(s) 157
CviAII CATG 4 cut(s) 266, 388, 413, 743
CviJI RGCY 6 cut(s) 74, 195, 331, 401, 405, 550
CviKI_1 RGCY 6 cut(s) 74, 195, 331, 401, 405, 550
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 2 cut(s) 188, 354
DpnI GATC 4 cut(s) 68, 621, 693, 724
DpnII GATC 4 cut(s) 66, 619, 691, 722
Eam1104I CTCTTC 1 cut(s) 792
EarI CTCTTC 1 cut(s) 792
Eco32I GATATC 1 cut(s) 748
Eco47I GGWCC 3 cut(s) 208, 365, 448
Eco57I CTGAAG 1 cut(s) 270
EcoO109I RGGNCCY 1 cut(s) 208
EcoRII CCWGG 2 cut(s) 367, 718
EcoRV GATATC 1 cut(s) 748
FaeI CATG 4 cut(s) 269, 391, 416, 746
FatI CATG 4 cut(s) 265, 387, 412, 742
FauI CCCGC 1 cut(s) 30
Fnu4HI GCNGC 4 cut(s) 379, 382, 399, 548
FokI GGATG 1 cut(s) 151
Fsp4HI GCNGC 4 cut(s) 379, 382, 399, 548
FspBI CTAG 2 cut(s) 231, 647
GluI GCNGC 4 cut(s) 379, 382, 399, 548
GsuI CTGGAG 1 cut(s) 224
Hin1II CATG 4 cut(s) 269, 391, 416, 746
HinfI GANTC 2 cut(s) 272, 830
HphI GGTGA 4 cut(s) 488, 546, 630, 702
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 6 cut(s) 71, 191, 250, 375, 469, 835
Hpy188III TCNNGA 2 cut(s) 203, 446
Hpy8I GTNNAC 1 cut(s) 271
HpyAV CCTTC 2 cut(s) 57, 561
HpyCH4III ACNGT 2 cut(s) 605, 701
HpyCH4V TGCA 4 cut(s) 13, 110, 497, 794
HpyF10VI GCNNNNNNNGC 1 cut(s) 547
HpyF3I CTNAG 2 cut(s) 188, 354
Hsp92II CATG 4 cut(s) 269, 391, 416, 746
Kzo9I GATC 4 cut(s) 66, 619, 691, 722
LmnI GCTCC 2 cut(s) 658, 730
Lsp1109I GCAGC 4 cut(s) 390, 393, 410, 559
LweI GCATC 2 cut(s) 119, 659
MabI ACCWGGT 1 cut(s) 367
MaeI CTAG 2 cut(s) 231, 647
MaeIII GTNAC 2 cut(s) 636, 708
MalI GATC 4 cut(s) 68, 621, 693, 724
MboI GATC 4 cut(s) 66, 619, 691, 722
MboII GAAGA 6 cut(s) 263, 605, 677, 749, 779, 809
MfeI CAATTG 1 cut(s) 51
MluCI AATT 9 cut(s) 44, 51, 121, 134, 360, 421, 520, 614, 686
MlyI GAGTC 1 cut(s) 266
MnlI CCTC 5 cut(s) 27, 199, 221, 582, 793
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 4 cut(s) 120, 348, 786, 847
MslI CAYNNNNRTG 2 cut(s) 492, 812
MspA1I CMGCKG 1 cut(s) 401
MspR9I CCNGG 2 cut(s) 369, 720
MunI CAATTG 1 cut(s) 51
MvaI CCWGG 2 cut(s) 369, 720
MwoI GCNNNNNNNGC 1 cut(s) 547
NdeII GATC 4 cut(s) 66, 619, 691, 722
NlaIII CATG 4 cut(s) 269, 391, 416, 746
NmuCI GTSAC 2 cut(s) 636, 708
NspI RCATGY 1 cut(s) 416
PciI ACATGT 1 cut(s) 412
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 830
PflFI GACNNNGTC 1 cut(s) 369
PflMI CCANNNNNTGG 1 cut(s) 202
PkrI GCNGC 4 cut(s) 380, 383, 400, 549
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PpuMI RGGWCCY 1 cut(s) 208
PscI ACATGT 1 cut(s) 412
Psp5II RGGWCCY 1 cut(s) 208
Psp6I CCWGG 2 cut(s) 367, 718
PspGI CCWGG 2 cut(s) 367, 718
PspPI GGNCC 3 cut(s) 208, 365, 448
PspPPI RGGWCCY 1 cut(s) 208
PsyI GACNNNGTC 1 cut(s) 369
PvuII CAGCTG 1 cut(s) 401
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
RseI CAYNNNNRTG 2 cut(s) 492, 812
SaqAI TTAA 4 cut(s) 120, 348, 786, 847
SatI GCNGC 4 cut(s) 379, 382, 399, 548
Sau3AI GATC 4 cut(s) 66, 619, 691, 722
Sau96I GGNCC 3 cut(s) 208, 365, 448
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 2 cut(s) 369, 720
SetI ASST 7 cut(s) 76, 213, 238, 333, 373, 403, 574
SexAI ACCWGGT 1 cut(s) 367
SfaNI GCATC 2 cut(s) 119, 659
SinI GGWCC 3 cut(s) 208, 365, 448
SmiMI CAYNNNNRTG 2 cut(s) 492, 812
SmlI CTYRAG 2 cut(s) 31, 274
SmoI CTYRAG 2 cut(s) 31, 274
Sse9I AATT 9 cut(s) 44, 51, 121, 134, 360, 421, 520, 614, 686
SsiI CCGC 1 cut(s) 37
SspMI CTAG 2 cut(s) 231, 647
StyD4I CCNGG 2 cut(s) 367, 718
TaaI ACNGT 2 cut(s) 605, 701
TasI AATT 9 cut(s) 44, 51, 121, 134, 360, 421, 520, 614, 686
TatI WGTACW 1 cut(s) 156
TfiI GAWTC 1 cut(s) 830
Tru1I TTAA 4 cut(s) 120, 348, 786, 847
Tru9I TTAA 4 cut(s) 120, 348, 786, 847
TseFI GTSAC 2 cut(s) 636, 708
TseI GCWGC 4 cut(s) 378, 381, 398, 547
Tsp45I GTSAC 2 cut(s) 636, 708
TspDTI ATGAA 2 cut(s) 254, 506
Tth111I GACNNNGTC 1 cut(s) 369
Van91I CCANNNNNTGG 1 cut(s) 202
VpaK11BI GGWCC 3 cut(s) 208, 365, 448
XapI RAATTY 4 cut(s) 134, 421, 614, 686
XceI RCATGY 1 cut(s) 416
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 2 cut(s) 231, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.