MD01G1047800.v1.1
MYB Family

cheY-homologous receiver domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0014797
Physical Location & Seq
Forward (+)
15007174 .. 15008926
1753 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1047800.v1.1.491

Sequence Viewer

Length: 873 bp
ATGAATGATGAGAAGGCCGTCCCAGTCGAATCTATGAAGAATTGTAGTCCAGTACCTGAAGCTGTCACTGTTTTGGCTGTTGACGGTGATTCTGCATGTCTTACTTTACTATCAAGAATGCTTTGTAAGTTGGGGTATAAAGTTTTGACAGCAAAAAGAGCCTGTGATGCATTATCCATTGCTCAGAAGAAGGAAAGTGAGCTTCATCTTGTTCTGACTGAGGTTCACCTGCCGGACATGGACAAATATGAGCTCCTAGAAAGAATGAGGGCAGTTTCCAAATTACCAGTTGTTATTATGTCTGATGATGATGATGAGAATGCCATGCTAGGTGGGCTGTTCAAAGGGGCAGTATATTACATTGTTAAACCACTCACAATGGACAGCCTAAAAAACCTATGGCAATTTGCATTCATCAGCAATAGAGATGCAGTCACCACCAACAACAATAGAGATGCAGTGATAGATCTCACTGCAGATGACAGCAGTGGTGAGTTCCAACAGGAGTACACATCAAATGAGGGTTTGGAGATTGAATCGATTACGAAGAAAGAGAAGCAGATCAGCCGTCGAAAATCACTGAAACGGAAAAATCCAGAAGGGATGAACAAAGATAAGGGAGGAGATAATTCTGATTCAACTTGTACCCAAAAGAAGCCAAAGATGGTTTGGACTAATGAGCTTCATAAGAAATTCGTGCAAGCTGTTACGTTGCTGGGAGTTGATAGTGCTCATCCAAAGAAAATACTTCAGCACATGAATGTCCCTGGCCTGTGGAAGGAAAATGTTTCAAGCCATTTGCAGGTTTGTTTCCTCGCAAATTCATATAACAAGAAACATCAACAGATTCTTTGCTCTGTAATCCTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Myb_DNA-binding Response_reg

Protein Analysis

291

Amino Acids

32.5

Weight (kDa)

7.04

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 24 - 132 1.2e-15 Response regulator receiver domain
Myb_DNA-binding PF00249 221 - 268 6.1e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014797)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13001
malus_domestica MD01G1047800.v1.1
prunus_persica Prupe.2G154100_v2.0.a1
pyrus_communis pycom01g07350 pycom07g11960
rosa_chinensis RchiOBHm_Chr1g0352151
rosa_laevigata RLG00000028356
rosa_roxburghii Rroxscaffold_2G00102750
rosa_rugosa Rorug01G0225100
rosa_samantha Rh1AG239100 Rh1AG239200 Rh1AG239300 Rh1BG210100 Rh1CG223700 Rh1DG236800 Rh7AG266700 Rh7CG284000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 237
Acc36I ACCTGC 2 cut(s) 237, 793
AcsI RAATTY 2 cut(s) 692, 820
AcuI CTGAAG 2 cut(s) 78, 734
AfaI GTAC 3 cut(s) 54, 509, 646
AfiI CCNNNNNNNGG 2 cut(s) 778, 802
AgsI TTSAA 4 cut(s) 343, 536, 639, 792
AjnI CCWGG 1 cut(s) 766
AluBI AGCT 5 cut(s) 62, 202, 253, 682, 704
AluI AGCT 5 cut(s) 62, 202, 253, 682, 704
Alw21I GWGCWC 2 cut(s) 255, 733
AlwNI CAGNNNCTG 1 cut(s) 56
AoxI GGCC 2 cut(s) 15, 769
ApoI RAATTY 2 cut(s) 692, 820
AsuHPI GGTGA 4 cut(s) 98, 218, 427, 503
BanII GRGCYC 1 cut(s) 255
Bbv12I GWGCWC 2 cut(s) 255, 733
BccI CCATC 1 cut(s) 658
BceAI ACGGC 2 cut(s) 2, 552
BciT130I CCWGG 1 cut(s) 768
BfaI CTAG 2 cut(s) 257, 329
BfmI CTRYAG 1 cut(s) 474
BfuAI ACCTGC 2 cut(s) 237, 793
BglII AGATCT 1 cut(s) 466
Bme1390I CCNGG 1 cut(s) 768
BmrFI CCNGG 1 cut(s) 768
BmrI ACTGGG 1 cut(s) 17
BmsI GCATC 3 cut(s) 157, 418, 445
BmuI ACTGGG 1 cut(s) 17
Bsa29I ATCGAT 1 cut(s) 539
BsaJI CCNNGG 1 cut(s) 766
Bsc4I CCNNNNNNNGG 2 cut(s) 778, 802
Bse1I ACTGG 3 cut(s) 23, 50, 287
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 768
BseCI ATCGAT 1 cut(s) 539
BseDI CCNNGG 1 cut(s) 766
BseGI GGATG 2 cut(s) 609, 733
BseLI CCNNNNNNNGG 2 cut(s) 778, 802
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 2 cut(s) 197, 210
BseNI ACTGG 3 cut(s) 23, 50, 287
BseRI GAGGAG 1 cut(s) 636
BseYI CCCAGC 1 cut(s) 715
BshFI GGCC 2 cut(s) 17, 771
BshVI ATCGAT 1 cut(s) 539
BsiHKAI GWGCWC 2 cut(s) 255, 733
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 2 cut(s) 5, 749
BslI CCNNNNNNNGG 2 cut(s) 778, 802
BsmFI GGGAC 2 cut(s) 5, 749
BsmI GAATGC 3 cut(s) 123, 325, 410
BsnI GGCC 2 cut(s) 17, 771
Bsp1286I GDGCHC 2 cut(s) 255, 733
Bsp143I GATC 2 cut(s) 466, 561
BspANI GGCC 2 cut(s) 17, 771
BspCNI CTCAG 2 cut(s) 196, 211
BspDI ATCGAT 1 cut(s) 539
BspMAI CTGCAG 1 cut(s) 478
BspMI ACCTGC 2 cut(s) 237, 793
BsrDI GCAATG 1 cut(s) 177
BsrI ACTGG 3 cut(s) 23, 50, 287
BssECI CCNNGG 1 cut(s) 766
BssMI GATC 2 cut(s) 466, 561
Bst2UI CCWGG 1 cut(s) 768
Bst4CI ACNGT 2 cut(s) 70, 86
BstC8I GCNNGC 1 cut(s) 702
BstDEI CTNAG 2 cut(s) 183, 219
BstENI CCTNNNNNAGG 1 cut(s) 776
BstF5I GGATG 2 cut(s) 609, 733
BstKTI GATC 2 cut(s) 469, 564
BstMBI GATC 2 cut(s) 466, 561
BstMWI GCNNNNNNNGC 3 cut(s) 158, 167, 334
BstNI CCWGG 1 cut(s) 768
BstNSI RCATGY 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 766
BstSFI CTRYAG 1 cut(s) 474
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
Bsu15I ATCGAT 1 cut(s) 539
BsuRI GGCC 2 cut(s) 17, 771
BsuTUI ATCGAT 1 cut(s) 539
BtsCI GGATG 2 cut(s) 609, 733
BtsI GCAGTG 3 cut(s) 465, 471, 493
BtsIMutI CAGTG 5 cut(s) 66, 465, 471, 493, 578
BveI ACCTGC 2 cut(s) 237, 793
Cac8I GCNNGC 1 cut(s) 702
CaiI CAGNNNCTG 1 cut(s) 56
ClaI ATCGAT 1 cut(s) 539
Csp6I GTAC 3 cut(s) 53, 508, 645
CviAII CATG 4 cut(s) 96, 238, 325, 757
CviQI GTAC 3 cut(s) 53, 508, 645
DdeI CTNAG 2 cut(s) 183, 219
DpnI GATC 2 cut(s) 468, 563
DpnII GATC 2 cut(s) 466, 561
Ecl136II GAGCTC 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 255
Eco53kI GAGCTC 1 cut(s) 253
Eco57I CTGAAG 2 cut(s) 78, 734
EcoICRI GAGCTC 1 cut(s) 253
EcoNI CCTNNNNNAGG 1 cut(s) 776
EcoRII CCWGG 1 cut(s) 766
EcoT22I ATGCAT 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 255
FaeI CATG 4 cut(s) 99, 241, 328, 760
FaqI GGGAC 2 cut(s) 5, 749
FatI CATG 4 cut(s) 95, 237, 324, 756
FokI GGATG 2 cut(s) 616, 720
FriOI GRGCYC 1 cut(s) 255
FspBI CTAG 2 cut(s) 257, 329
GsaI CCCAGC 1 cut(s) 719
HaeIII GGCC 2 cut(s) 17, 771
HapII CCGG 1 cut(s) 233
Hin1II CATG 4 cut(s) 99, 241, 328, 760
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 5 cut(s) 29, 89, 536, 635, 847
HpaII CCGG 1 cut(s) 233
HphI GGTGA 4 cut(s) 98, 218, 427, 503
Hpy166II GTNNAC 3 cut(s) 82, 226, 510
Hpy188I TCNGA 4 cut(s) 186, 216, 304, 634
Hpy188III TCNNGA 2 cut(s) 114, 596
Hpy8I GTNNAC 3 cut(s) 82, 226, 510
Hpy99I CGWCG 1 cut(s) 573
HpyAV CCTTC 4 cut(s) 7, 184, 593, 772
HpyCH4III ACNGT 2 cut(s) 70, 86
HpyCH4IV ACGT 1 cut(s) 710
HpyCH4V TGCA 8 cut(s) 95, 170, 410, 431, 458, 476, 700, 802
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 167, 334
HpyF3I CTNAG 2 cut(s) 183, 219
HpySE526I ACGT 1 cut(s) 710
Hsp92II CATG 4 cut(s) 99, 241, 328, 760
Kzo9I GATC 2 cut(s) 466, 561
LmnI GCTCC 1 cut(s) 258
LweI GCATC 3 cut(s) 157, 418, 445
MaeI CTAG 2 cut(s) 257, 329
MaeII ACGT 1 cut(s) 710
MaeIII GTNAC 3 cut(s) 64, 433, 706
MalI GATC 2 cut(s) 468, 563
MboI GATC 2 cut(s) 466, 561
MboII GAAGA 3 cut(s) 49, 199, 559
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 2 cut(s) 255, 733
MluCI AATT 6 cut(s) 40, 281, 404, 628, 692, 820
MmeI TCCRAC 1 cut(s) 523
MnlI CCTC 5 cut(s) 214, 261, 514, 614, 824
Mph1103I ATGCAT 1 cut(s) 172
MseI TTAA 2 cut(s) 366, 871
MslI CAYNNNNRTG 1 cut(s) 759
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 768
Mva1269I GAATGC 3 cut(s) 123, 325, 410
MvaI CCWGG 1 cut(s) 768
MwoI GCNNNNNNNGC 3 cut(s) 158, 167, 334
NdeII GATC 2 cut(s) 466, 561
NlaIII CATG 4 cut(s) 99, 241, 328, 760
NmuCI GTSAC 2 cut(s) 64, 433
NsiI ATGCAT 1 cut(s) 172
NspI RCATGY 1 cut(s) 99
PaqCI CACCTGC 1 cut(s) 237
PctI GAATGC 3 cut(s) 123, 325, 410
PfeI GAWTC 5 cut(s) 29, 89, 536, 635, 847
Psp124BI GAGCTC 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 766
PspFI CCCAGC 1 cut(s) 715
PspGI CCWGG 1 cut(s) 766
PstI CTGCAG 1 cut(s) 478
PstNI CAGNNNCTG 1 cut(s) 56
PsuI RGATCY 1 cut(s) 466
RsaI GTAC 3 cut(s) 54, 509, 646
RsaNI GTAC 3 cut(s) 53, 508, 645
RseI CAYNNNNRTG 1 cut(s) 759
SacI GAGCTC 1 cut(s) 255
SaqAI TTAA 2 cut(s) 366, 871
Sau3AI GATC 2 cut(s) 466, 561
ScrFI CCNGG 1 cut(s) 768
SduI GDGCHC 2 cut(s) 255, 733
SfaNI GCATC 3 cut(s) 157, 418, 445
SfcI CTRYAG 1 cut(s) 474
SmiMI CAYNNNNRTG 1 cut(s) 759
Sse9I AATT 6 cut(s) 40, 281, 404, 628, 692, 820
SspMI CTAG 2 cut(s) 257, 329
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 766
TaaI ACNGT 2 cut(s) 70, 86
TaiI ACGT 1 cut(s) 713
TaqI TCGA 3 cut(s) 27, 539, 571
TasI AATT 6 cut(s) 40, 281, 404, 628, 692, 820
TatI WGTACW 1 cut(s) 507
TfiI GAWTC 5 cut(s) 29, 89, 536, 635, 847
Tru1I TTAA 2 cut(s) 366, 871
Tru9I TTAA 2 cut(s) 366, 871
TscAI CASTG 5 cut(s) 73, 465, 478, 493, 585
TseFI GTSAC 2 cut(s) 64, 433
Tsp45I GTSAC 2 cut(s) 64, 433
TspDTI ATGAA 8 cut(s) 17, 50, 194, 403, 620, 674, 773, 813
TspGWI ACGGA 1 cut(s) 601
TspRI CASTG 5 cut(s) 73, 465, 478, 493, 585
XagI CCTNNNNNAGG 1 cut(s) 776
XapI RAATTY 2 cut(s) 692, 820
XceI RCATGY 1 cut(s) 99
XcmI CCANNNNNNNNNTGG 1 cut(s) 666
XspI CTAG 2 cut(s) 257, 329
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.