RchiOBHm_Chr1g0352151
MYB Family

cheY-homologous receiver domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
45381892 .. 45382537
646 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57789

Sequence Viewer

Length: 354 bp
ATGGATAGTCTCAAGAACCTATGGCAATTTGCATTCAAAAACAACAGAAATGTGGTCATAGACATTACTAAAGAGGAAAGCAATACTCATGTAGAATCACAAGCAAAGATACCAAATTCCGAAAGAGAAAGGTCAGAAGGAATGGACAATTATGTGGAGAAAGATAGCAATTGTTCAACAGCCTTTACGAAGCGAAGGGTAATATGGACTGATGAGCTGCATCATAGATTCTTGCAAGCTGTCAAACTAATAGGCATTGATGGTGCTCGTCCAAAGAAAATAATTCAGCTTATGAATGTTCCTGGACTGATGAGAAGAAATGTTTCAAGCCATTTGCAGGTTTGTTCCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

117

Amino Acids

13.57

Weight (kDa)

9.3

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014797)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 328
AcsI RAATTY 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 337
AgsI TTSAA 3 cut(s) 37, 177, 327
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 3 cut(s) 217, 239, 289
AluI AGCT 3 cut(s) 217, 239, 289
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 217
ApoI RAATTY 1 cut(s) 115
Asp700I GAANNNNTTC 1 cut(s) 322
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 1 cut(s) 204
BccI CCATC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 14
BfuAI ACCTGC 1 cut(s) 328
BisI GCNGC 1 cut(s) 218
BlsI GCNGC 1 cut(s) 219
Bme1390I CCNGG 1 cut(s) 303
BmrFI CCNGG 1 cut(s) 303
BmsI GCATC 1 cut(s) 229
Bsc4I CCNNNNNNNGG 1 cut(s) 337
BseBI CCWGG 1 cut(s) 303
BseLI CCNNNNNNNGG 1 cut(s) 337
BseXI GCAGC 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 268
BslI CCNNNNNNNGG 1 cut(s) 337
BsmAI GTCTC 1 cut(s) 14
BsmI GAATGC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 268
BspMI ACCTGC 1 cut(s) 328
Bst2UI CCWGG 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 237
BstMAI GTCTC 1 cut(s) 14
BstNI CCWGG 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 301
BstV1I GCAGC 1 cut(s) 204
BveI ACCTGC 1 cut(s) 328
Cac8I GCNNGC 1 cut(s) 237
CviAII CATG 2 cut(s) 89, 349
CviJI RGCY 5 cut(s) 182, 217, 239, 289, 330
CviKI_1 RGCY 5 cut(s) 182, 217, 239, 289, 330
EcoRII CCWGG 1 cut(s) 301
FaeI CATG 2 cut(s) 92, 352
FaiI YATR 8 cut(s) 22, 59, 90, 153, 205, 225, 293, 350
FatI CATG 2 cut(s) 88, 348
Fnu4HI GCNGC 1 cut(s) 218
Fsp4HI GCNGC 1 cut(s) 218
GluI GCNGC 1 cut(s) 218
Hin1II CATG 2 cut(s) 92, 352
HinfI GANTC 2 cut(s) 95, 228
Hpy188I TCNGA 2 cut(s) 121, 136
Hpy188III TCNNGA 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 131, 189
HpyCH4V TGCA 4 cut(s) 32, 220, 235, 337
Hsp92II CATG 2 cut(s) 92, 352
LpnPI CCDG 3 cut(s) 288, 315, 323
Lsp1109I GCAGC 1 cut(s) 204
LweI GCATC 1 cut(s) 229
MboII GAAGA 1 cut(s) 327
MfeI CAATTG 1 cut(s) 169
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 5 cut(s) 26, 115, 148, 169, 282
MnlI CCTC 1 cut(s) 67
MroXI GAANNNNTTC 1 cut(s) 322
MspR9I CCNGG 1 cut(s) 303
MunI CAATTG 1 cut(s) 169
Mva1269I GAATGC 1 cut(s) 32
MvaI CCWGG 1 cut(s) 303
NlaIII CATG 2 cut(s) 92, 352
PctI GAATGC 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 322
PfeI GAWTC 2 cut(s) 95, 228
PfoI TCCNGGA 1 cut(s) 301
PkrI GCNGC 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
SatI GCNGC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 1 cut(s) 268
SetI ASST 6 cut(s) 21, 134, 219, 241, 291, 342
SfaNI GCATC 1 cut(s) 229
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 5 cut(s) 26, 115, 148, 169, 282
StyD4I CCNGG 1 cut(s) 301
TasI AATT 5 cut(s) 26, 115, 148, 169, 282
TfiI GAWTC 2 cut(s) 95, 228
TseI GCWGC 1 cut(s) 217
TspDTI ATGAA 1 cut(s) 308
XapI RAATTY 1 cut(s) 115
XmnI GAANNNNTTC 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.