Rh1CG223700
MYB Family

cheY-homologous receiver domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0014797
Physical Location & Seq
Forward (+)
47411871 .. 47412617
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG223700.1

Sequence Viewer

Length: 384 bp
ATGATCACTGCAGCAATGTGCAATGAGATGGCCATCTCAGTTGAATCTATGAAGACTAGTCCAAAACCAGCTAAAGGTTTCAGTGTTTTGGCTGTTGATGGTGATTCTGAATGTCTAGAAATGCTGTCAAGACTACTAGGGAGCTTAGGATATAAAGTTTTGACAGCTAAAGGATCCTCTGAGGCATTAGATATCGCTCAGAAGAAGGAAGCTGATCTTGATGTTGTTCTGACAGAGGCACACTTGCCTGACATGAACAAATATGAGCTCCTAGAGAAAATGACCGCAGTCTCCAATTTACCTGTTTTTATCATGTCTGATGATGACTATATGAATGCCAAGATTGGTTGTCTGTTTAAAGGGGCTGTTTATTATATTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Myb_DNA-binding Response_reg

Protein Analysis

127

Amino Acids

13.79

Weight (kDa)

4.69

Isoelectric Point (pI)

38.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 29 - 126 5.2e-12 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014797)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13001
malus_domestica MD01G1047800.v1.1
prunus_persica Prupe.2G154100_v2.0.a1
pyrus_communis pycom01g07350 pycom07g11960
rosa_chinensis RchiOBHm_Chr1g0352151
rosa_laevigata RLG00000028356
rosa_roxburghii Rroxscaffold_2G00102750
rosa_rugosa Rorug01G0225100
rosa_samantha Rh1AG239100 Rh1AG239200 Rh1AG239300 Rh1BG210100 Rh1CG223700 Rh1DG236800 Rh7AG266700 Rh7CG284000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 285
AclWI GGATC 2 cut(s) 168, 181
AcoI YGGCCR 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 74
AgsI TTSAA 1 cut(s) 44
AhlI ACTAGT 1 cut(s) 56
AluBI AGCT 5 cut(s) 71, 144, 167, 212, 268
AluI AGCT 5 cut(s) 71, 144, 167, 212, 268
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 1 cut(s) 295
AlwI GGATC 2 cut(s) 168, 181
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 113
BalI TGGCCA 1 cut(s) 32
BamHI GGATCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 23
BccI CCATC 3 cut(s) 22, 41, 92
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 295
BcuI ACTAGT 1 cut(s) 56
BfaI CTAG 4 cut(s) 57, 116, 137, 272
BfmI CTRYAG 1 cut(s) 9
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 175
BoxI GACNNNNGTC 1 cut(s) 287
BpiI GAAGAC 1 cut(s) 59
Bpu10I CCTNAGC 1 cut(s) 145
BsaBI GATNNNNATC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse3DI GCAATG 2 cut(s) 21, 28
Bse8I GATNNNNATC 1 cut(s) 32
BseJI GATNNNNATC 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 2 cut(s) 21, 28
BseMII CTCAG 3 cut(s) 51, 171, 212
BseXI GCAGC 1 cut(s) 23
BshFI GGCC 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 270
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 295
BsmI GAATGC 1 cut(s) 340
BsnI GGCC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 3 cut(s) 3, 173, 214
BspACI CCGC 1 cut(s) 285
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 3 cut(s) 50, 172, 211
BspLI GGNNCC 1 cut(s) 175
BspMAI CTGCAG 1 cut(s) 13
BspPI GGATC 2 cut(s) 168, 181
BsrDI GCAATG 2 cut(s) 21, 28
BssMI GATC 3 cut(s) 3, 173, 214
BstDEI CTNAG 4 cut(s) 37, 145, 180, 198
BstKTI GATC 3 cut(s) 6, 176, 217
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 3 cut(s) 3, 173, 214
BstPAI GACNNNNGTC 1 cut(s) 287
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 23
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BsuRI GGCC 1 cut(s) 32
BtsI GCAGTG 1 cut(s) 6
BtsIMutI CAGTG 2 cut(s) 6, 88
CviAII CATG 2 cut(s) 253, 313
CviJI RGCY 8 cut(s) 32, 71, 92, 144, 167, 212, 268, 365
CviKI_1 RGCY 8 cut(s) 32, 71, 92, 144, 167, 212, 268, 365
DdeI CTNAG 4 cut(s) 37, 145, 180, 198
DpnI GATC 3 cut(s) 5, 175, 216
DpnII GATC 3 cut(s) 3, 173, 214
DraI TTTAAA 1 cut(s) 358
EaeI YGGCCR 1 cut(s) 30
Ecl136II GAGCTC 1 cut(s) 268
Eco24I GRGCYC 1 cut(s) 270
Eco32I GATATC 1 cut(s) 193
Eco53kI GAGCTC 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 268
EcoRV GATATC 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 270
FaeI CATG 2 cut(s) 256, 316
FaiI YATR 8 cut(s) 50, 153, 254, 264, 314, 330, 332, 375
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FatI CATG 2 cut(s) 252, 312
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 12
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 4 cut(s) 57, 116, 137, 272
GluI GCNGC 1 cut(s) 12
HaeIII GGCC 1 cut(s) 32
Hin1II CATG 2 cut(s) 256, 316
HinfI GANTC 2 cut(s) 44, 104
HphI GGTGA 1 cut(s) 113
Hpy188I TCNGA 5 cut(s) 109, 181, 201, 231, 319
Hpy188III TCNNGA 3 cut(s) 116, 129, 218
HpyAV CCTTC 1 cut(s) 199
HpyCH4V TGCA 2 cut(s) 11, 21
HpyF3I CTNAG 4 cut(s) 37, 145, 180, 198
Hsp92II CATG 2 cut(s) 256, 316
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 173, 214
LmnI GCTCC 2 cut(s) 141, 273
LpnPI CCDG 3 cut(s) 81, 261, 315
Lsp1109I GCAGC 1 cut(s) 23
MaeI CTAG 4 cut(s) 57, 116, 137, 272
MalI GATC 3 cut(s) 5, 175, 216
MboI GATC 3 cut(s) 3, 173, 214
MboII GAAGA 2 cut(s) 64, 214
MflI RGATCY 1 cut(s) 173
MhlI GDGCHC 1 cut(s) 270
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 1 cut(s) 295
MluNI TGGCCA 1 cut(s) 32
MnlI CCTC 3 cut(s) 175, 187, 229
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MseI TTAA 1 cut(s) 357
Msp20I TGGCCA 1 cut(s) 32
Mva1269I GAATGC 1 cut(s) 340
NdeII GATC 3 cut(s) 3, 173, 214
NlaIII CATG 2 cut(s) 256, 316
NlaIV GGNNCC 1 cut(s) 175
PctI GAATGC 1 cut(s) 340
PfeI GAWTC 2 cut(s) 44, 104
PkrI GCNGC 1 cut(s) 13
PshAI GACNNNNGTC 1 cut(s) 287
Psp124BI GAGCTC 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 175
PstI CTGCAG 1 cut(s) 13
PsuI RGATCY 1 cut(s) 173
SacI GAGCTC 1 cut(s) 270
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 3 cut(s) 3, 173, 214
SduI GDGCHC 1 cut(s) 270
SetI ASST 7 cut(s) 73, 79, 146, 169, 214, 270, 304
SfcI CTRYAG 1 cut(s) 9
SpeI ACTAGT 1 cut(s) 56
Sse9I AATT 1 cut(s) 295
SsiI CCGC 1 cut(s) 285
SspMI CTAG 4 cut(s) 57, 116, 137, 272
SstI GAGCTC 1 cut(s) 270
TasI AATT 1 cut(s) 295
TfiI GAWTC 2 cut(s) 44, 104
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 2 cut(s) 13, 88
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 3 cut(s) 65, 269, 347
TspRI CASTG 2 cut(s) 13, 88
XbaI TCTAGA 1 cut(s) 115
XspI CTAG 4 cut(s) 57, 116, 137, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.