Rorug01G0225100
MYB Family

cheY-homologous receiver domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014797
Physical Location & Seq
Forward (+)
32369022 .. 32369941
920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0225100.1

Sequence Viewer

Length: 723 bp
ATGTCCATAGAAACCGAAAGCTTCTCGAACTCAGACTGGGCTCTCTTGGAGTCGATCCGCCAGCATCTTCTTGACGACGATTTCGATACACAGTTGGGTTTTTTCGCAGATTCTCCTGCTCAAAGTACTTCCAGCTCCAACAGCACTGAGATATCGAACAGTGATGCGGAGATAGTGGGGCAGAACCAAGCATTCACTAGTGAATTTGAGGAGGAGGTGGCGGAGCGTAAACACCACGCGCCATCGGCACCGAGGCATTTTAGAGGAGTGAGAAGGCGGCCGTGGGGAAAGTACGCGGCGGAGATAAGGGACCCGAAGAAGAACGGGATGAGAGTGTGGCTCGGAACCTACGAGACGGCGGAGGATGCCGGATTGGCTTACGACCGAGCCGCTTTCAAAATGCGTGGCTCCAAAGCTAAGCTTAACTTTCCTCACTTGATTGGCACGCATGATATGGAGGTGGGCCGTGTGCTTCCCAAGCGTGCGTCGCCGGAGCAGTCATCTCCGTCCTCCACGACGTCGTCTGAAGATGGCTCGCCGAAGCCAAAGAGGAGGAGGGGTGGAGTGGACTCGGCTGCGCCGAAAGCCAAGTTGGAGGAAGCTGCTCAAGAGTTTCATGTGTTCAAAGTGGACTCATTCACATTTGGCAACGAACTATTGGTTGAGGATATGGTGCTCTTGTCATCATCTGAATGCTCAGACATTCTTTCTTTTTTGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Myb_DNA-binding Response_reg

Protein Analysis

240

Amino Acids

26.7

Weight (kDa)

5.34

Isoelectric Point (pI)

64.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 86 - 137 8.3e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014797)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13001
malus_domestica MD01G1047800.v1.1
prunus_persica Prupe.2G154100_v2.0.a1
pyrus_communis pycom01g07350 pycom07g11960
rosa_chinensis RchiOBHm_Chr1g0352151
rosa_laevigata RLG00000028356
rosa_roxburghii Rroxscaffold_2G00102750
rosa_rugosa Rorug01G0225100
rosa_samantha Rh1AG239100 Rh1AG239200 Rh1AG239300 Rh1BG210100 Rh1CG223700 Rh1DG236800 Rh7AG266700 Rh7CG284000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 521
AccB1I GGYRCC 1 cut(s) 247
AccII CGCG 2 cut(s) 239, 296
AciI CCGC 8 cut(s) 58, 167, 221, 277, 296, 299, 359, 390
AclWI GGATC 1 cut(s) 49
AcoI YGGCCR 1 cut(s) 278
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 1 cut(s) 546
AcyI GRCGYC 1 cut(s) 518
AfaI GTAC 3 cut(s) 127, 293, 719
AgsI TTSAA 2 cut(s) 397, 625
AhlI ACTAGT 1 cut(s) 197
AjuI GAANNNNNNNTTGG 2 cut(s) 575, 607
AluBI AGCT 5 cut(s) 21, 135, 416, 421, 602
AluI AGCT 5 cut(s) 21, 135, 416, 421, 602
Alw21I GWGCWC 1 cut(s) 678
Alw26I GTCTC 1 cut(s) 347
AlwI GGATC 1 cut(s) 49
AoxI GGCC 2 cut(s) 278, 463
ApeKI GCWGC 2 cut(s) 575, 602
ApoI RAATTY 1 cut(s) 203
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AspLEI GCGC 2 cut(s) 241, 580
AspS9I GGNCC 2 cut(s) 310, 463
AvaII GGWCC 1 cut(s) 310
BanI GGYRCC 1 cut(s) 247
BanII GRGCYC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 678
BbvI GCAGC 2 cut(s) 562, 589
BccI CCATC 2 cut(s) 250, 524
BceAI ACGGC 3 cut(s) 265, 372, 450
BcoDI GTCTC 1 cut(s) 347
BcuI ACTAGT 1 cut(s) 197
BfaI CTAG 1 cut(s) 198
BglI GCCNNNNNGGC 1 cut(s) 374
BisI GCNGC 5 cut(s) 278, 297, 390, 576, 603
BlpI GCTNAGC 1 cut(s) 417
BlsI GCNGC 5 cut(s) 279, 298, 391, 577, 604
BmcAI AGTACT 1 cut(s) 127
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 2 cut(s) 310, 463
BmiI GGNNCC 5 cut(s) 249, 311, 312, 346, 409
BmrI ACTGGG 1 cut(s) 46
BmsI GCATC 3 cut(s) 73, 154, 355
BmuI ACTGGG 1 cut(s) 46
BplI GAGNNNNNCTC 2 cut(s) 324, 356
Bpu1102I GCTNAGC 1 cut(s) 417
BpuEI CTTGAG 1 cut(s) 591
BsaHI GRCGYC 1 cut(s) 518
BsaJI CCNNGG 2 cut(s) 251, 281
BsaXI ACNNNNNCTCC 2 cut(s) 544, 574
Bse1I ACTGG 1 cut(s) 41
BseDI CCNNGG 2 cut(s) 251, 281
BseGI GGATG 2 cut(s) 333, 370
BseMII CTCAG 3 cut(s) 45, 138, 711
BseNI ACTGG 1 cut(s) 41
BseRI GAGGAG 5 cut(s) 224, 227, 279, 565, 568
BseX3I CGGCCG 1 cut(s) 278
BseXI GCAGC 2 cut(s) 562, 589
Bsh1236I CGCG 2 cut(s) 239, 296
Bsh1285I CGRYCG 2 cut(s) 281, 385
BshFI GGCC 2 cut(s) 280, 465
BshNI GGYRCC 1 cut(s) 247
BsiEI CGRYCG 2 cut(s) 281, 385
BsiHKAI GWGCWC 1 cut(s) 678
BsiSI CCGG 2 cut(s) 369, 491
BslFI GGGAC 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 347
BsmBI CGTCTC 1 cut(s) 347
BsmFI GGGAC 1 cut(s) 323
BsmI GAATGC 2 cut(s) 191, 698
BsnI GGCC 2 cut(s) 280, 465
Bsp1286I GDGCHC 2 cut(s) 43, 678
Bsp143I GATC 1 cut(s) 54
Bsp1720I GCTNAGC 1 cut(s) 417
BspACI CCGC 8 cut(s) 58, 167, 221, 277, 296, 299, 359, 390
BspANI GGCC 2 cut(s) 280, 465
BspCNI CTCAG 3 cut(s) 44, 139, 710
BspFNI CGCG 2 cut(s) 239, 296
BspLI GGNNCC 5 cut(s) 249, 311, 312, 346, 409
BspPI GGATC 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 247
BsrI ACTGG 1 cut(s) 41
BssECI CCNNGG 2 cut(s) 251, 281
BssMI GATC 1 cut(s) 54
BssNI GRCGYC 1 cut(s) 518
Bst4CI ACNGT 2 cut(s) 93, 161
BstACI GRCGYC 1 cut(s) 518
BstC8I GCNNGC 4 cut(s) 62, 446, 483, 536
BstDEI CTNAG 4 cut(s) 31, 147, 417, 697
BstDSI CCRYGG 1 cut(s) 281
BstF5I GGATG 2 cut(s) 333, 370
BstFNI CGCG 2 cut(s) 239, 296
BstHHI GCGC 2 cut(s) 241, 580
BstKTI GATC 1 cut(s) 57
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 1 cut(s) 54
BstMCI CGRYCG 2 cut(s) 281, 385
BstMWI GCNNNNNNNGC 7 cut(s) 141, 245, 365, 374, 478, 487, 584
BstUI CGCG 2 cut(s) 239, 296
BstV1I GCAGC 2 cut(s) 562, 589
BstZI CGGCCG 1 cut(s) 278
BsuRI GGCC 2 cut(s) 280, 465
BtgI CCRYGG 1 cut(s) 281
BtsCI GGATG 2 cut(s) 333, 370
BtsIMutI CAGTG 2 cut(s) 144, 166
Cac8I GCNNGC 4 cut(s) 62, 446, 483, 536
CfoI GCGC 2 cut(s) 241, 580
Cfr13I GGNCC 2 cut(s) 310, 463
CseI GACGC 1 cut(s) 474
Csp6I GTAC 3 cut(s) 126, 292, 718
CspCI CAANNNNNGTGG 2 cut(s) 385, 420
CviAII CATG 2 cut(s) 449, 617
CviQI GTAC 3 cut(s) 126, 292, 718
DdeI CTNAG 4 cut(s) 31, 147, 417, 697
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
EaeI YGGCCR 1 cut(s) 278
EagI CGGCCG 1 cut(s) 278
EciI GGCGGA 4 cut(s) 47, 236, 314, 374
EclXI CGGCCG 1 cut(s) 278
Eco24I GRGCYC 1 cut(s) 43
Eco32I GATATC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 310
Eco52I CGGCCG 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 546
EcoO109I RGGNCCY 1 cut(s) 310
EcoRV GATATC 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 43
Esp3I CGTCTC 1 cut(s) 347
FaeI CATG 2 cut(s) 452, 620
FaiI YATR 5 cut(s) 8, 450, 455, 618, 671
FalI AAGNNNNNCTT 4 cut(s) 405, 437, 410, 442
FaqI GGGAC 1 cut(s) 323
FatI CATG 2 cut(s) 448, 616
Fnu4HI GCNGC 5 cut(s) 278, 297, 390, 576, 603
FokI GGATG 2 cut(s) 340, 377
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 5 cut(s) 278, 297, 390, 576, 603
FspBI CTAG 1 cut(s) 198
GlaI GCGC 2 cut(s) 240, 579
GluI GCNGC 5 cut(s) 278, 297, 390, 576, 603
HaeIII GGCC 2 cut(s) 280, 465
HapII CCGG 2 cut(s) 369, 491
HgaI GACGC 1 cut(s) 474
HhaI GCGC 2 cut(s) 241, 580
Hin1I GRCGYC 1 cut(s) 518
Hin1II CATG 2 cut(s) 452, 620
Hin6I GCGC 2 cut(s) 239, 578
HinP1I GCGC 2 cut(s) 239, 578
HindIII AAGCTT 2 cut(s) 19, 419
HinfI GANTC 4 cut(s) 50, 110, 569, 632
HpaII CCGG 2 cut(s) 369, 491
Hpy166II GTNNAC 3 cut(s) 230, 568, 631
Hpy188I TCNGA 5 cut(s) 34, 344, 526, 691, 700
Hpy188III TCNNGA 3 cut(s) 25, 71, 608
Hpy8I GTNNAC 3 cut(s) 230, 568, 631
Hpy99I CGWCG 4 cut(s) 80, 490, 520, 523
HpyAV CCTTC 1 cut(s) 267
HpyCH4III ACNGT 2 cut(s) 93, 161
HpyCH4IV ACGT 1 cut(s) 518
HpyF10VI GCNNNNNNNGC 7 cut(s) 141, 245, 365, 374, 478, 487, 584
HpyF3I CTNAG 4 cut(s) 31, 147, 417, 697
HpySE526I ACGT 1 cut(s) 518
Hsp92I GRCGYC 1 cut(s) 518
Hsp92II CATG 2 cut(s) 452, 620
HspAI GCGC 2 cut(s) 239, 578
KflI GGGWCCC 1 cut(s) 310
Kzo9I GATC 1 cut(s) 54
LmnI GCTCC 4 cut(s) 140, 223, 413, 493
LpnPI CCDG 6 cut(s) 22, 74, 129, 145, 382, 504
Lsp1109I GCAGC 2 cut(s) 562, 589
LweI GCATC 3 cut(s) 73, 154, 355
MaeI CTAG 1 cut(s) 198
MaeII ACGT 1 cut(s) 518
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MboII GAAGA 4 cut(s) 59, 328, 331, 539
MhlI GDGCHC 2 cut(s) 43, 678
MluCI AATT 1 cut(s) 203
MlyI GAGTC 3 cut(s) 59, 563, 626
MmeI TCCRAC 2 cut(s) 162, 573
MseI TTAA 1 cut(s) 423
MslI CAYNNNNRTG 1 cut(s) 691
MspI CCGG 2 cut(s) 369, 491
Mva1269I GAATGC 2 cut(s) 191, 698
MvnI CGCG 2 cut(s) 239, 296
MwoI GCNNNNNNNGC 7 cut(s) 141, 245, 365, 374, 478, 487, 584
NdeII GATC 1 cut(s) 54
NlaIII CATG 2 cut(s) 452, 620
NlaIV GGNNCC 5 cut(s) 249, 311, 312, 346, 409
NmeAIII GCCGAG 1 cut(s) 551
PcsI WCGNNNNNNNCGW 3 cut(s) 81, 348, 578
PctI GAATGC 2 cut(s) 191, 698
PfeI GAWTC 1 cut(s) 110
PflFI GACNNNGTC 1 cut(s) 520
PkrI GCNGC 5 cut(s) 279, 298, 391, 577, 604
PleI GAGTC 3 cut(s) 58, 563, 626
PpsI GAGTC 3 cut(s) 58, 563, 626
PpuMI RGGWCCY 1 cut(s) 310
Psp5II RGGWCCY 1 cut(s) 310
PspN4I GGNNCC 5 cut(s) 249, 311, 312, 346, 409
PspPI GGNCC 2 cut(s) 310, 463
PspPPI RGGWCCY 1 cut(s) 310
PsyI GACNNNGTC 1 cut(s) 520
RsaI GTAC 3 cut(s) 127, 293, 719
RsaNI GTAC 3 cut(s) 126, 292, 718
RseI CAYNNNNRTG 1 cut(s) 691
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 5 cut(s) 278, 297, 390, 576, 603
Sau3AI GATC 1 cut(s) 54
Sau96I GGNCC 2 cut(s) 310, 463
ScaI AGTACT 1 cut(s) 127
SchI GAGTC 3 cut(s) 59, 563, 626
SduI GDGCHC 2 cut(s) 43, 678
SetI ASST 9 cut(s) 23, 137, 219, 350, 418, 423, 462, 521, 604
SfaNI GCATC 3 cut(s) 73, 154, 355
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 691
SmlI CTYRAG 1 cut(s) 606
SmoI CTYRAG 1 cut(s) 606
SpeI ACTAGT 1 cut(s) 197
Sse9I AATT 1 cut(s) 203
SsiI CCGC 8 cut(s) 58, 167, 221, 277, 296, 299, 359, 390
SspMI CTAG 1 cut(s) 198
TaaI ACNGT 2 cut(s) 93, 161
TaiI ACGT 1 cut(s) 521
TaqI TCGA 4 cut(s) 26, 53, 84, 155
TaqII GACCGA 1 cut(s) 399
TasI AATT 1 cut(s) 203
TatI WGTACW 2 cut(s) 125, 717
TauI GCSGC 3 cut(s) 280, 299, 392
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 2 cut(s) 151, 166
TseI GCWGC 2 cut(s) 575, 602
TspDTI ATGAA 1 cut(s) 605
TspGWI ACGGA 1 cut(s) 495
TspRI CASTG 2 cut(s) 151, 166
Tth111I GACNNNGTC 1 cut(s) 520
VpaK11BI GGWCC 1 cut(s) 310
XapI RAATTY 1 cut(s) 203
XspI CTAG 1 cut(s) 198
ZraI GACGTC 1 cut(s) 519
ZrmI AGTACT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.