pycom01g07350

Flap endonuclease GEN-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
8225546 .. 8230635
5090 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g07350.1

Sequence Viewer

Length: 1992 bp
ATGTCTTCTCTTGCCAGTTCTCTTGCCTTACTATCTTTTCAGGCACTCAGAGAAACTCATTGTATGCAGGAACCATCTGAATGTTACTATATGTCAGATATCGAAGCTGGTCTTGGTTTGAAGAGGAACCACTTGATTGCTCTCTCTCTTTTGGTTGGAAATGACCACGATTTAAATGGGGTCCAAGGCATTGGGCTTGATACAGCTCTTCCTTTTGCCCAAAGTTTTTGTGAAGAAGAGATAATGAGTAGGGATCACATTTCATGCAGGTTATGTAAAATAGGCAATGGTGATGGTTCTCTCTTTCATGGTGGTATGAAATCTGTGGATGATAGCATACCAAGATTGGATGAGAGCCCATTAAAGACAAAATTTTCTCATTGTTCTTTTTCTGGGCATCCCGGCAGCAAAAGAACTCATTTCAAGTCTTCCTGTGAATTCTGTATCAACGCAGTTGGTGAGGGTTGCATGAAAAAATCAGAGGGGTTCAAATGCAAAAATGACGGTCCTAGAGTATCATGGGCAAGTCCAAAGACTGAGATGCTGGTTCAGTTCTTGACTTATCATCAGCGGTGGGAACCGTCTTATATTCGCCAGAGGATGCTGCCTATGCTTTCAACTATTTTTTTTTTGAGGGAAATGGCTAAAAATCCCGTGAAAAGTTTATTATATGGGCAGTATAAGTTCAATTCCATAGACCGCTTGAAGATAAGATATGGGCACCAATTTTATGTGGTCAAGTGGAAAATAGCTGCACCTACATTGGGTTGTGTCAGTTACTCAATCCCTCCGGAGGACTCAGATATGCAACAAGATGATGTTATGGAGGTTGATGAATCCTTTAGTCCATTGGATGAGTCTGATGTTCCTACGATAGATATTAGTGGAGGGTGTTGCTTTTTGTTGACCGATGAAAATATGGATGTCGTCCATGCTGCTTTCCCGGTGGAAGTTGACAAATTTTTGAAGGAGAAGGAACTGAAACAATTGAAAAGAAGAAAAACGACTGGTGGAAAGCCAGAAACACCAGGATCAGAAGGTGTCTTGCTATATATCACAAAATTTTTCCGTTCTGCCAAAACACAATATGAGACAGAACTGGGAGAAGACTTAACCCAGAATACTAATAGTCAGAGAGCTGAAACTAGCAAAGAAAAGAGAAAACCGTCGAGTTCAAACCTCCCTAAGTCCGTGAGACGTCATCTTTTGTTTGACTATGGCAATTTCAGATCTGAGGCCCCTGCTGCACAATCATGCGAAGCCATGAATGATGAGAAGGCCGTCCCAGTCGAATCTATGAAGAATTGTAGTCCAGTATTTGAAGGTGTCACTGTTTTGGCTGTTGACGGTGATTCTGCATGTCTTACTTTACTATCAAGAATGCTTTGTAAGTTGGGGTATAAAGTTTTGACAGCAAAAAGAGCCTGTGATGCATTATCCATTGCTCAGAAGAAGGAAAATGAGCTTCATCTTGTTCTGACTGAGGTTCACTTGCCTGACATGGACAAATATGAGCTCCTAGAAAGAATGAGAGCAGTTTCCAAATTACCAGTTGTTATTATGTCTGATGATGATGATGAGAATGCCATGCTAGGTGGGCTGTTCAAAGGGGCAGTATATTACATTGTTAAACCACTCACAATGGACAGCCTAAAAAACCTATGGCAATTTGCATTCATCAGCAATAGAGATGCAGTGATAGATCTCACTGCAGATGACAGCAGTGGTGAGTTCCAACAGGAGTACACATCAAATGAGGGTTTGGAGATTGAATCGATTATGAAGAAAGAGAAGCAGATCAGCCGTCGAAAATCGCTGAAACGGAAAAATCCAGAAGGGATGAACAAAGATAAGGGAGGAGATAATTCTGATTCAACTTCTACCCAAAAGAAGCCAAAGATGGTTTGGACTAATGAGCTTCATAAGAAATTCGTGCAAGCTGTTACGTTGCTGGGAGTTGATAGTAAGAGTCTCTTCTTATTTTTTTTATAA

Protein Analysis

664

Amino Acids

74.53

Weight (kDa)

6.36

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 445 - 553 5e-15 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014797)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1990
AatII GACGTC 1 cut(s) 1201
Acc36I ACCTGC 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 720
AccIII TCCGGA 1 cut(s) 790
AciI CCGC 2 cut(s) 571, 700
AclWI GGATC 2 cut(s) 261, 1039
AcsI RAATTY 5 cut(s) 371, 437, 959, 1061, 1928
AcyI GRCGYC 1 cut(s) 1198
AfaI GTAC 1 cut(s) 1745
AfiI CCNNNNNNNGG 2 cut(s) 764, 793
AjnI CCWGG 1 cut(s) 1027
AjuI GAANNNNNNNTTGG 2 cut(s) 96, 128
AluBI AGCT 8 cut(s) 107, 206, 752, 1139, 1465, 1516, 1918, 1940
AluI AGCT 8 cut(s) 107, 206, 752, 1139, 1465, 1516, 1918, 1940
Alw21I GWGCWC 1 cut(s) 1518
Alw26I GTCTC 3 cut(s) 1085, 1189, 1976
AlwI GGATC 2 cut(s) 261, 1039
Aor13HI TCCGGA 1 cut(s) 790
AoxI GGCC 2 cut(s) 1236, 1278
ApeKI GCWGC 5 cut(s) 405, 604, 752, 935, 1244
ApoI RAATTY 5 cut(s) 371, 437, 959, 1061, 1928
AspS9I GGNCC 3 cut(s) 181, 506, 1237
AsuC2I CCSGG 2 cut(s) 402, 944
AsuHPI GGTGA 4 cut(s) 302, 470, 1361, 1739
AvaII GGWCC 2 cut(s) 181, 506
BaeGI GKGCMC 1 cut(s) 723
BanI GGYRCC 1 cut(s) 720
BanII GRGCYC 2 cut(s) 359, 1518
BbsI GAAGAC 2 cut(s) 420, 1113
Bbv12I GWGCWC 1 cut(s) 1518
BbvI GCAGC 5 cut(s) 417, 591, 739, 922, 1231
BccI CCATC 3 cut(s) 82, 287, 1894
BceAI ACGGC 2 cut(s) 1265, 1788
BciT130I CCWGG 1 cut(s) 1029
BcnI CCSGG 2 cut(s) 402, 944
BcoDI GTCTC 3 cut(s) 1085, 1189, 1976
BfaI CTAG 4 cut(s) 510, 1146, 1520, 1592
BfmI CTRYAG 1 cut(s) 1710
BfuAI ACCTGC 1 cut(s) 258
BglII AGATCT 2 cut(s) 1229, 1702
BisI GCNGC 5 cut(s) 406, 605, 753, 936, 1245
BlsI GCNGC 5 cut(s) 407, 606, 754, 937, 1246
Bme1390I CCNGG 3 cut(s) 402, 944, 1029
Bme18I GGWCC 2 cut(s) 181, 506
BmgT120I GGNCC 3 cut(s) 181, 506, 1237
BmiI GGNNCC 6 cut(s) 72, 128, 182, 579, 722, 1239
BmrFI CCNGG 3 cut(s) 402, 944, 1029
BmrI ACTGGG 2 cut(s) 1109, 1280
BmsI GCATC 5 cut(s) 406, 531, 591, 1420, 1681
BmuI ACTGGG 2 cut(s) 1109, 1280
BpiI GAAGAC 2 cut(s) 420, 1113
BpuMI CCSGG 2 cut(s) 402, 944
Bsa29I ATCGAT 1 cut(s) 1775
BsaHI GRCGYC 1 cut(s) 1198
BsaJI CCNNGG 1 cut(s) 184
BsaWI WCCGGW 1 cut(s) 790
Bsc4I CCNNNNNNNGG 2 cut(s) 764, 793
Bse1I ACTGG 6 cut(s) 15, 1012, 1104, 1286, 1313, 1550
Bse3DI GCAATG 2 cut(s) 292, 1440
BseAI TCCGGA 1 cut(s) 790
BseBI CCWGG 1 cut(s) 1029
BseCI ATCGAT 1 cut(s) 1775
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 7 cut(s) 334, 355, 397, 606, 859, 928, 1845
BseLI CCNNNNNNNGG 2 cut(s) 764, 793
BseMI GCAATG 2 cut(s) 292, 1440
BseMII CTCAG 6 cut(s) 61, 528, 813, 1224, 1460, 1473
BseNI ACTGG 6 cut(s) 15, 1012, 1104, 1286, 1313, 1550
BseRI GAGGAG 1 cut(s) 1872
BseSI GKGCMC 1 cut(s) 723
BseXI GCAGC 5 cut(s) 417, 591, 739, 922, 1231
BseYI CCCAGC 1 cut(s) 1951
BsgI GTGCAG 2 cut(s) 738, 1230
BshFI GGCC 2 cut(s) 1238, 1280
BshNI GGYRCC 1 cut(s) 720
BshVI ATCGAT 1 cut(s) 1775
BsiHKAI GWGCWC 1 cut(s) 1518
BsiSI CCGG 3 cut(s) 402, 791, 944
BslFI GGGAC 1 cut(s) 1268
BslI CCNNNNNNNGG 2 cut(s) 764, 793
BsmAI GTCTC 3 cut(s) 1085, 1189, 1976
BsmBI CGTCTC 1 cut(s) 1189
BsmFI GGGAC 1 cut(s) 1268
BsmI GAATGC 3 cut(s) 1386, 1588, 1673
BsnI GGCC 2 cut(s) 1238, 1280
Bsp1286I GDGCHC 3 cut(s) 359, 723, 1518
Bsp13I TCCGGA 1 cut(s) 790
Bsp143I GATC 5 cut(s) 253, 1031, 1229, 1702, 1797
BspACI CCGC 2 cut(s) 571, 700
BspANI GGCC 2 cut(s) 1238, 1280
BspCNI CTCAG 6 cut(s) 60, 529, 812, 1225, 1459, 1474
BspDI ATCGAT 1 cut(s) 1775
BspEI TCCGGA 1 cut(s) 790
BspLI GGNNCC 6 cut(s) 72, 128, 182, 579, 722, 1239
BspMAI CTGCAG 1 cut(s) 1714
BspMI ACCTGC 1 cut(s) 258
BspPI GGATC 2 cut(s) 261, 1039
BspQI GCTCTTC 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 720
BsrDI GCAATG 2 cut(s) 292, 1440
BsrI ACTGG 6 cut(s) 15, 1012, 1104, 1286, 1313, 1550
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 5 cut(s) 253, 1031, 1229, 1702, 1797
BssNI GRCGYC 1 cut(s) 1198
BssT1I CCWWGG 1 cut(s) 184
Bst2UI CCWGG 1 cut(s) 1029
Bst4CI ACNGT 5 cut(s) 506, 582, 1167, 1333, 1349
Bst6I CTCTTC 4 cut(s) 116, 213, 231, 1979
BstACI GRCGYC 1 cut(s) 1198
BstC8I GCNNGC 1 cut(s) 1938
BstDEI CTNAG 7 cut(s) 47, 537, 799, 1185, 1233, 1446, 1482
BstF5I GGATG 7 cut(s) 334, 355, 397, 606, 859, 928, 1845
BstKTI GATC 5 cut(s) 256, 1034, 1232, 1705, 1800
BstMAI GTCTC 3 cut(s) 1085, 1189, 1976
BstMBI GATC 5 cut(s) 253, 1031, 1229, 1702, 1797
BstMWI GCNNNNNNNGC 5 cut(s) 610, 1244, 1421, 1430, 1597
BstNI CCWGG 1 cut(s) 1029
BstNSI RCATGY 1 cut(s) 1362
BstSCI CCNGG 3 cut(s) 400, 942, 1027
BstSFI CTRYAG 1 cut(s) 1710
BstSLI GKGCMC 1 cut(s) 723
BstV1I GCAGC 5 cut(s) 417, 591, 739, 922, 1231
BstV2I GAAGAC 2 cut(s) 420, 1113
BstX2I RGATCY 2 cut(s) 1229, 1702
BstXI CCANNNNNNTGG 1 cut(s) 191
BstYI RGATCY 2 cut(s) 1229, 1702
Bsu15I ATCGAT 1 cut(s) 1775
BsuRI GGCC 2 cut(s) 1238, 1280
BsuTUI ATCGAT 1 cut(s) 1775
BtsCI GGATG 7 cut(s) 334, 355, 397, 606, 859, 928, 1845
BtsI GCAGTG 3 cut(s) 1701, 1707, 1729
BtsIMutI CAGTG 4 cut(s) 1329, 1701, 1707, 1729
BveI ACCTGC 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 1938
Cfr13I GGNCC 3 cut(s) 181, 506, 1237
ClaI ATCGAT 1 cut(s) 1775
Csp6I GTAC 1 cut(s) 1744
CviQI GTAC 1 cut(s) 1744
DdeI CTNAG 7 cut(s) 47, 537, 799, 1185, 1233, 1446, 1482
DpnI GATC 5 cut(s) 255, 1033, 1231, 1704, 1799
DpnII GATC 5 cut(s) 253, 1031, 1229, 1702, 1797
DraI TTTAAA 1 cut(s) 174
Eam1104I CTCTTC 4 cut(s) 116, 213, 231, 1979
EarI CTCTTC 4 cut(s) 116, 213, 231, 1979
Ecl136II GAGCTC 1 cut(s) 1516
Eco130I CCWWGG 1 cut(s) 184
Eco24I GRGCYC 2 cut(s) 359, 1518
Eco32I GATATC 1 cut(s) 100
Eco47I GGWCC 2 cut(s) 181, 506
Eco53kI GAGCTC 1 cut(s) 1516
EcoICRI GAGCTC 1 cut(s) 1516
EcoO109I RGGNCCY 1 cut(s) 1237
EcoRI GAATTC 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 1027
EcoRV GATATC 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 184
EcoT22I ATGCAT 1 cut(s) 1435
EcoT38I GRGCYC 2 cut(s) 359, 1518
ErhI CCWWGG 1 cut(s) 184
Esp3I CGTCTC 1 cut(s) 1189
FalI AAGNNNNNCTT 4 cut(s) 96, 128, 1958, 1990
FaqI GGGAC 1 cut(s) 1268
Fnu4HI GCNGC 5 cut(s) 406, 605, 753, 936, 1245
FokI GGATG 7 cut(s) 341, 362, 384, 613, 866, 935, 1852
FriOI GRGCYC 2 cut(s) 359, 1518
Fsp4HI GCNGC 5 cut(s) 406, 605, 753, 936, 1245
FspBI CTAG 4 cut(s) 510, 1146, 1520, 1592
GluI GCNGC 5 cut(s) 406, 605, 753, 936, 1245
GsaI CCCAGC 1 cut(s) 1955
HaeIII GGCC 2 cut(s) 1238, 1280
HapII CCGG 3 cut(s) 402, 791, 944
Hin1I GRCGYC 1 cut(s) 1198
HincII GTYRAC 3 cut(s) 906, 955, 1345
HindII GTYRAC 3 cut(s) 906, 955, 1345
HinfI GANTC 8 cut(s) 797, 836, 857, 1292, 1352, 1772, 1871, 1969
HpaII CCGG 3 cut(s) 402, 791, 944
HphI GGTGA 4 cut(s) 302, 470, 1361, 1739
Hpy166II GTNNAC 5 cut(s) 906, 955, 1345, 1489, 1746
Hpy188III TCNNGA 4 cut(s) 556, 791, 1377, 1832
Hpy8I GTNNAC 5 cut(s) 906, 955, 1345, 1489, 1746
Hpy99I CGWCG 2 cut(s) 1171, 1809
HpyAV CCTTC 7 cut(s) 961, 967, 1031, 1270, 1316, 1447, 1829
HpyCH4III ACNGT 5 cut(s) 506, 582, 1167, 1333, 1349
HpyCH4IV ACGT 2 cut(s) 1198, 1946
HpyF10VI GCNNNNNNNGC 5 cut(s) 610, 1244, 1421, 1430, 1597
HpyF3I CTNAG 7 cut(s) 47, 537, 799, 1185, 1233, 1446, 1482
HpySE526I ACGT 2 cut(s) 1198, 1946
Hsp92I GRCGYC 1 cut(s) 1198
Kpn2I TCCGGA 1 cut(s) 790
Kzo9I GATC 5 cut(s) 253, 1031, 1229, 1702, 1797
LguI GCTCTTC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 1521
Lsp1109I GCAGC 5 cut(s) 417, 591, 739, 922, 1231
LweI GCATC 5 cut(s) 406, 531, 591, 1420, 1681
MaeI CTAG 4 cut(s) 510, 1146, 1520, 1592
MaeII ACGT 2 cut(s) 1198, 1946
MaeIII GTNAC 4 cut(s) 83, 776, 1327, 1942
MalI GATC 5 cut(s) 255, 1033, 1231, 1704, 1799
MboI GATC 5 cut(s) 253, 1031, 1229, 1702, 1797
MfeI CAATTG 1 cut(s) 986
MflI RGATCY 2 cut(s) 1229, 1702
MhlI GDGCHC 3 cut(s) 359, 723, 1518
MlyI GAGTC 3 cut(s) 791, 866, 1978
MmeI TCCRAC 2 cut(s) 136, 1759
Mph1103I ATGCAT 1 cut(s) 1435
MroI TCCGGA 1 cut(s) 790
MseI TTAA 4 cut(s) 173, 362, 1112, 1629
MslI CAYNNNNRTG 2 cut(s) 79, 1252
MspA1I CMGCKG 1 cut(s) 571
MspI CCGG 3 cut(s) 402, 791, 944
MspR9I CCNGG 3 cut(s) 402, 944, 1029
MunI CAATTG 1 cut(s) 986
Mva1269I GAATGC 3 cut(s) 1386, 1588, 1673
MvaI CCWGG 1 cut(s) 1029
MwoI GCNNNNNNNGC 5 cut(s) 610, 1244, 1421, 1430, 1597
NciI CCSGG 2 cut(s) 402, 944
NdeII GATC 5 cut(s) 253, 1031, 1229, 1702, 1797
NlaIV GGNNCC 6 cut(s) 72, 128, 182, 579, 722, 1239
NmuCI GTSAC 1 cut(s) 1327
NsiI ATGCAT 1 cut(s) 1435
NspI RCATGY 1 cut(s) 1362
PciSI GCTCTTC 1 cut(s) 213
PctI GAATGC 3 cut(s) 1386, 1588, 1673
PfeI GAWTC 5 cut(s) 836, 1292, 1352, 1772, 1871
PkrI GCNGC 5 cut(s) 407, 606, 754, 937, 1246
PleI GAGTC 3 cut(s) 791, 865, 1977
PpsI GAGTC 3 cut(s) 791, 865, 1977
PsiI TTATAA 1 cut(s) 1990
Psp124BI GAGCTC 1 cut(s) 1518
Psp6I CCWGG 1 cut(s) 1027
PspFI CCCAGC 1 cut(s) 1951
PspGI CCWGG 1 cut(s) 1027
PspN4I GGNNCC 6 cut(s) 72, 128, 182, 579, 722, 1239
PspPI GGNCC 3 cut(s) 181, 506, 1237
PstI CTGCAG 1 cut(s) 1714
PsuI RGATCY 2 cut(s) 1229, 1702
RsaI GTAC 1 cut(s) 1745
RsaNI GTAC 1 cut(s) 1744
RseI CAYNNNNRTG 2 cut(s) 79, 1252
SacI GAGCTC 1 cut(s) 1518
SapI GCTCTTC 1 cut(s) 213
SaqAI TTAA 4 cut(s) 173, 362, 1112, 1629
SatI GCNGC 5 cut(s) 406, 605, 753, 936, 1245
Sau3AI GATC 5 cut(s) 253, 1031, 1229, 1702, 1797
Sau96I GGNCC 3 cut(s) 181, 506, 1237
SchI GAGTC 3 cut(s) 791, 866, 1978
ScrFI CCNGG 3 cut(s) 402, 944, 1029
SduI GDGCHC 3 cut(s) 359, 723, 1518
SfaNI GCATC 5 cut(s) 406, 531, 591, 1420, 1681
SfcI CTRYAG 1 cut(s) 1710
SinI GGWCC 2 cut(s) 181, 506
SmiI ATTTAAAT 1 cut(s) 174
SmiMI CAYNNNNRTG 2 cut(s) 79, 1252
SsiI CCGC 2 cut(s) 571, 700
SspMI CTAG 4 cut(s) 510, 1146, 1520, 1592
SstI GAGCTC 1 cut(s) 1518
StyD4I CCNGG 3 cut(s) 400, 942, 1027
StyI CCWWGG 1 cut(s) 184
SwaI ATTTAAAT 1 cut(s) 174
TaaI ACNGT 5 cut(s) 506, 582, 1167, 1333, 1349
TaiI ACGT 2 cut(s) 1201, 1949
TaqI TCGA 5 cut(s) 102, 1169, 1290, 1775, 1807
TaqII GACCGA 1 cut(s) 923
TatI WGTACW 1 cut(s) 1743
TfiI GAWTC 5 cut(s) 836, 1292, 1352, 1772, 1871
Tru1I TTAA 4 cut(s) 173, 362, 1112, 1629
Tru9I TTAA 4 cut(s) 173, 362, 1112, 1629
TscAI CASTG 4 cut(s) 1336, 1701, 1714, 1729
TseFI GTSAC 1 cut(s) 1327
TseI GCWGC 5 cut(s) 405, 604, 752, 935, 1244
Tsp45I GTSAC 1 cut(s) 1327
TspGWI ACGGA 3 cut(s) 1058, 1180, 1837
TspRI CASTG 4 cut(s) 1336, 1701, 1714, 1729
VpaK11BI GGWCC 2 cut(s) 181, 506
XapI RAATTY 5 cut(s) 371, 437, 959, 1061, 1928
XceI RCATGY 1 cut(s) 1362
XcmI CCANNNNNNNNNTGG 2 cut(s) 173, 1902
XspI CTAG 4 cut(s) 510, 1146, 1520, 1592
ZraI GACGTC 1 cut(s) 1199
Zsp2I ATGCAT 1 cut(s) 1435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.