cheY-homologous receiver domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g13001 |
| malus_domestica | MD01G1047800.v1.1 |
| prunus_persica | Prupe.2G154100_v2.0.a1 |
| pyrus_communis | pycom01g07350 pycom07g11960 |
| rosa_chinensis | RchiOBHm_Chr1g0352151 |
| rosa_laevigata | RLG00000028356 |
| rosa_roxburghii | Rroxscaffold_2G00102750 |
| rosa_rugosa | Rorug01G0225100 |
| rosa_samantha | Rh1AG239100 Rh1AG239200 Rh1AG239300 Rh1BG210100 Rh1CG223700 Rh1DG236800 Rh7AG266700 Rh7CG284000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 18, 453 |
| AcsI | RAATTY | 1 cut(s) | 473 |
| AfaI | GTAC | 1 cut(s) | 54 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 559 |
| AgsI | TTSAA | 4 cut(s) | 29, 59, 349, 515 |
| AluBI | AGCT | 3 cut(s) | 161, 202, 253 |
| AluI | AGCT | 3 cut(s) | 161, 202, 253 |
| Alw21I | GWGCWC | 1 cut(s) | 255 |
| ApoI | RAATTY | 1 cut(s) | 473 |
| AsuHPI | GGTGA | 2 cut(s) | 98, 442 |
| BanII | GRGCYC | 1 cut(s) | 255 |
| BbsI | GAAGAC | 1 cut(s) | 201 |
| Bbv12I | GWGCWC | 1 cut(s) | 255 |
| BccI | CCATC | 3 cut(s) | 77, 379, 572 |
| BceAI | ACGGC | 1 cut(s) | 422 |
| BfaI | CTAG | 3 cut(s) | 257, 329, 335 |
| BisI | GCNGC | 1 cut(s) | 18 |
| BlsI | GCNGC | 1 cut(s) | 19 |
| BmcAI | AGTACT | 1 cut(s) | 54 |
| BmsI | GCATC | 2 cut(s) | 157, 424 |
| BpiI | GAAGAC | 1 cut(s) | 201 |
| BpmI | CTGGAG | 1 cut(s) | 33 |
| BsaJI | CCNNGG | 1 cut(s) | 219 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 559 |
| Bse1I | ACTGG | 2 cut(s) | 50, 287 |
| Bse3DI | GCAATG | 1 cut(s) | 177 |
| BseDI | CCNNGG | 1 cut(s) | 219 |
| BseGI | GGATG | 4 cut(s) | 310, 518, 549, 583 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 559 |
| BseMI | GCAATG | 1 cut(s) | 177 |
| BseMII | CTCAG | 2 cut(s) | 197, 257 |
| BseNI | ACTGG | 2 cut(s) | 50, 287 |
| BsiHKAI | GWGCWC | 1 cut(s) | 255 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 559 |
| BsmI | GAATGC | 3 cut(s) | 123, 325, 416 |
| Bsp1286I | GDGCHC | 1 cut(s) | 255 |
| Bsp143I | GATC | 1 cut(s) | 540 |
| BspACI | CCGC | 2 cut(s) | 18, 453 |
| BspCNI | CTCAG | 2 cut(s) | 196, 258 |
| BsrDI | GCAATG | 1 cut(s) | 177 |
| BsrI | ACTGG | 2 cut(s) | 50, 287 |
| BssECI | CCNNGG | 1 cut(s) | 219 |
| BssMI | GATC | 1 cut(s) | 540 |
| Bst4CI | ACNGT | 1 cut(s) | 574 |
| BstDEI | CTNAG | 2 cut(s) | 183, 266 |
| BstF5I | GGATG | 4 cut(s) | 310, 518, 549, 583 |
| BstKTI | GATC | 1 cut(s) | 543 |
| BstMBI | GATC | 1 cut(s) | 540 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 158, 167, 340 |
| BstNSI | RCATGY | 1 cut(s) | 99 |
| BstV2I | GAAGAC | 1 cut(s) | 201 |
| BtsCI | GGATG | 4 cut(s) | 310, 518, 549, 583 |
| BtsI | GCAGTG | 2 cut(s) | 444, 472 |
| BtsIMutI | CAGTG | 3 cut(s) | 444, 472, 579 |
| Csp6I | GTAC | 1 cut(s) | 53 |
| CviAII | CATG | 3 cut(s) | 96, 325, 523 |
| CviJI | RGCY | 7 cut(s) | 17, 77, 161, 202, 253, 343, 393 |
| CviKI_1 | RGCY | 7 cut(s) | 17, 77, 161, 202, 253, 343, 393 |
| CviQI | GTAC | 1 cut(s) | 53 |
| DdeI | CTNAG | 2 cut(s) | 183, 266 |
| DpnI | GATC | 1 cut(s) | 542 |
| DpnII | GATC | 1 cut(s) | 540 |
| Ecl136II | GAGCTC | 1 cut(s) | 253 |
| Eco24I | GRGCYC | 1 cut(s) | 255 |
| Eco53kI | GAGCTC | 1 cut(s) | 253 |
| EcoICRI | GAGCTC | 1 cut(s) | 253 |
| EcoRI | GAATTC | 1 cut(s) | 473 |
| EcoT22I | ATGCAT | 1 cut(s) | 172 |
| EcoT38I | GRGCYC | 1 cut(s) | 255 |
| FaeI | CATG | 3 cut(s) | 99, 328, 526 |
| FaiI | YATR | 8 cut(s) | 35, 97, 138, 249, 299, 326, 361, 524 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 186, 218 |
| FatI | CATG | 3 cut(s) | 95, 324, 522 |
| Fnu4HI | GCNGC | 1 cut(s) | 18 |
| FokI | GGATG | 3 cut(s) | 317, 505, 536 |
| FriOI | GRGCYC | 1 cut(s) | 255 |
| Fsp4HI | GCNGC | 1 cut(s) | 18 |
| FspBI | CTAG | 3 cut(s) | 257, 329, 335 |
| GluI | GCNGC | 1 cut(s) | 18 |
| GsuI | CTGGAG | 1 cut(s) | 33 |
| Hin1II | CATG | 3 cut(s) | 99, 328, 526 |
| HinfI | GANTC | 3 cut(s) | 29, 89, 515 |
| HphI | GGTGA | 2 cut(s) | 98, 442 |
| Hpy166II | GTNNAC | 1 cut(s) | 226 |
| Hpy188I | TCNGA | 3 cut(s) | 186, 216, 304 |
| Hpy188III | TCNNGA | 3 cut(s) | 114, 382, 544 |
| Hpy8I | GTNNAC | 1 cut(s) | 226 |
| HpyAV | CCTTC | 2 cut(s) | 53, 184 |
| HpyCH4III | ACNGT | 1 cut(s) | 574 |
| HpyCH4V | TGCA | 3 cut(s) | 170, 416, 437 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 158, 167, 340 |
| HpyF3I | CTNAG | 2 cut(s) | 183, 266 |
| Hsp92II | CATG | 3 cut(s) | 99, 328, 526 |
| Kzo9I | GATC | 1 cut(s) | 540 |
| LmnI | GCTCC | 1 cut(s) | 258 |
| LpnPI | CCDG | 6 cut(s) | 63, 246, 300, 467, 529, 567 |
| LweI | GCATC | 2 cut(s) | 157, 424 |
| MaeI | CTAG | 3 cut(s) | 257, 329, 335 |
| MaeIII | GTNAC | 1 cut(s) | 448 |
| MalI | GATC | 1 cut(s) | 542 |
| MboI | GATC | 1 cut(s) | 540 |
| MboII | GAAGA | 4 cut(s) | 49, 199, 206, 538 |
| MhlI | GDGCHC | 1 cut(s) | 255 |
| MluCI | AATT | 3 cut(s) | 281, 410, 473 |
| MmeI | TCCRAC | 2 cut(s) | 282, 502 |
| MnlI | CCTC | 4 cut(s) | 31, 214, 451, 493 |
| Mph1103I | ATGCAT | 1 cut(s) | 172 |
| MseI | TTAA | 1 cut(s) | 372 |
| MslI | CAYNNNNRTG | 1 cut(s) | 329 |
| Mva1269I | GAATGC | 3 cut(s) | 123, 325, 416 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 158, 167, 340 |
| NdeII | GATC | 1 cut(s) | 540 |
| NlaIII | CATG | 3 cut(s) | 99, 328, 526 |
| NmuCI | GTSAC | 1 cut(s) | 448 |
| NsiI | ATGCAT | 1 cut(s) | 172 |
| NspI | RCATGY | 1 cut(s) | 99 |
| PctI | GAATGC | 3 cut(s) | 123, 325, 416 |
| PfeI | GAWTC | 3 cut(s) | 29, 89, 515 |
| PkrI | GCNGC | 1 cut(s) | 19 |
| Psp124BI | GAGCTC | 1 cut(s) | 255 |
| RsaI | GTAC | 1 cut(s) | 54 |
| RsaNI | GTAC | 1 cut(s) | 53 |
| RseI | CAYNNNNRTG | 1 cut(s) | 329 |
| SacI | GAGCTC | 1 cut(s) | 255 |
| SaqAI | TTAA | 1 cut(s) | 372 |
| SatI | GCNGC | 1 cut(s) | 18 |
| Sau3AI | GATC | 1 cut(s) | 540 |
| ScaI | AGTACT | 1 cut(s) | 54 |
| SduI | GDGCHC | 1 cut(s) | 255 |
| SetI | ASST | 7 cut(s) | 64, 163, 204, 225, 255, 340, 405 |
| SfaNI | GCATC | 2 cut(s) | 157, 424 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 329 |
| Sse9I | AATT | 3 cut(s) | 281, 410, 473 |
| SsiI | CCGC | 2 cut(s) | 18, 453 |
| SspMI | CTAG | 3 cut(s) | 257, 329, 335 |
| SstI | GAGCTC | 1 cut(s) | 255 |
| TaaI | ACNGT | 1 cut(s) | 574 |
| TaqII | GACCGA | 1 cut(s) | 233 |
| TasI | AATT | 3 cut(s) | 281, 410, 473 |
| TatI | WGTACW | 1 cut(s) | 52 |
| TauI | GCSGC | 1 cut(s) | 20 |
| TfiI | GAWTC | 3 cut(s) | 29, 89, 515 |
| Tru1I | TTAA | 1 cut(s) | 372 |
| Tru9I | TTAA | 1 cut(s) | 372 |
| TscAI | CASTG | 3 cut(s) | 444, 472, 579 |
| TseFI | GTSAC | 1 cut(s) | 448 |
| Tsp45I | GTSAC | 1 cut(s) | 448 |
| TspDTI | ATGAA | 6 cut(s) | 17, 50, 194, 409, 486, 539 |
| TspGWI | ACGGA | 1 cut(s) | 575 |
| TspRI | CASTG | 3 cut(s) | 444, 472, 579 |
| XapI | RAATTY | 1 cut(s) | 473 |
| XceI | RCATGY | 1 cut(s) | 99 |
| XspI | CTAG | 3 cut(s) | 257, 329, 335 |
| ZrmI | AGTACT | 1 cut(s) | 54 |
| Zsp2I | ATGCAT | 1 cut(s) | 172 |