Rh1DG236800
MYB Family

cheY-homologous receiver domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0014797
Physical Location & Seq
Forward (+)
45003104 .. 45012446
9343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG236800.1

Sequence Viewer

Length: 1056 bp
ATGCACTTTAGAGAGGCTGATCCCAGAGGTACTGAGTACACTCTTCGTGCAGTTTTGACAGCTAAAGGAGCCTCTGAGGCATTAGATATCGCTCAGAAGAAGGAAGCTGATCTTGATGTTGTTCTGACAGAGGCACACTTGCCTGACATGAACAAATATGAGCTCCTAGGGAAAATGACCGCAGTCTCCAATTTACCTGTTAAATATCGCCACTCCTTGAGGCGGGAACAACTAGCAATTGAAAAGAGAAGGATCAGAGCTTCCAAATCAGCAAGTTCTCAACCAAGAAAATCTGCATCAACATTTAATTTTCAAGAAGAATTTCCCCAACTCCCAAATCTGTACTCCACATCCACACCATATCAACCAGAACTCAGAAGCCATTTTCTGGAGGACCTCAATAGTCAAATGCCCACTAGACCTGCCTTTGGTTCTGCAGATATTCCTATTCATGTGGACTCAAGTAGTAATGAGACATCAAATAAAAAATATGGGCAACCAACTCAAAGAAATCAGCTTGATTATAGTTATTTTAATGCTGAGCAAATTGGACCAGGTCAGAGCAGCAGCAACATGGATTTGGCAGCTGGCTTTGGACATGTTGAAAACTTTTTCAGGGAAGATATTTTTCAGGACCAGAACAAGAATTTCTCCGATGTTGGTGATTTTGGTCATCAAAATGCAACAGATTGCCCAATACTTCATAATTCTATACAACAAAAAGAGCAACAGCGGCCTTCACCATTGCAATTAATGCCTTCACCACCACCATCACCACCTCCACAACCACAAGACCAAGAAGAATATAACAGTTTTGGGGAATTTGATCCACACATTTTGCTGTCACCCCTACTAGCATCACAGGAGCAAGAAGAATATAACATTTTTGGGGAATTTGATCCACACAGTCTGCTGTCACCCCTACCAGGATCACAGGAGCAAGAAGAATATGACACCTTTGGGTTTGAAGGAGGAGAAAGTGATGACTTATTTAACTTTGCAGAAGAGGACACCATTCAAGTGTTCGATGATGTGGATTCCGATGATTTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Myb_DNA-binding Response_reg

Protein Analysis

351

Amino Acids

39.74

Weight (kDa)

4.55

Isoelectric Point (pI)

68.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014797)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13001
malus_domestica MD01G1047800.v1.1
prunus_persica Prupe.2G154100_v2.0.a1
pyrus_communis pycom01g07350 pycom07g11960
rosa_chinensis RchiOBHm_Chr1g0352151
rosa_laevigata RLG00000028356
rosa_roxburghii Rroxscaffold_2G00102750
rosa_rugosa Rorug01G0225100
rosa_samantha Rh1AG239100 Rh1AG239200 Rh1AG239300 Rh1BG210100 Rh1CG223700 Rh1DG236800 Rh7AG266700 Rh7CG284000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 430
AccB7I CCANNNNNTGG 1 cut(s) 388
AciI CCGC 3 cut(s) 180, 223, 733
AclWI GGATC 5 cut(s) 14, 260, 821, 893, 937
AcsI RAATTY 4 cut(s) 320, 646, 821, 893
AfaI GTAC 3 cut(s) 31, 38, 344
AfiI CCNNNNNNNGG 4 cut(s) 222, 388, 428, 926
AflIII ACRYGT 1 cut(s) 598
AgsI TTSAA 5 cut(s) 242, 314, 605, 968, 1019
AjnI CCWGG 2 cut(s) 553, 925
AluBI AGCT 6 cut(s) 62, 107, 163, 260, 517, 587
AluI AGCT 6 cut(s) 62, 107, 163, 260, 517, 587
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 2 cut(s) 190, 467
AlwI GGATC 5 cut(s) 14, 260, 821, 893, 937
AoxI GGCC 1 cut(s) 734
ApeKI GCWGC 3 cut(s) 564, 567, 584
ApoI RAATTY 4 cut(s) 320, 646, 821, 893
AseI ATTAAT 1 cut(s) 752
Asp700I GAANNNNTTC 1 cut(s) 321
AspA2I CCTAGG 1 cut(s) 166
AspS9I GGNCC 3 cut(s) 394, 551, 634
AsuHPI GGTGA 6 cut(s) 674, 732, 753, 765, 837, 909
AvaII GGWCC 3 cut(s) 394, 551, 634
AvrII CCTAGG 1 cut(s) 166
BanII GRGCYC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 3 cut(s) 576, 579, 596
BccI CCATC 1 cut(s) 778
BciT130I CCWGG 2 cut(s) 555, 927
BcoDI GTCTC 2 cut(s) 190, 467
BfaI CTAG 4 cut(s) 167, 233, 417, 854
BfmI CTRYAG 1 cut(s) 435
BfuAI ACCTGC 1 cut(s) 430
BglI GCCNNNNNGGC 1 cut(s) 77
BisI GCNGC 4 cut(s) 565, 568, 585, 734
BlnI CCTAGG 1 cut(s) 166
BlpI GCTNAGC 1 cut(s) 540
BlsI GCNGC 4 cut(s) 566, 569, 586, 735
Bme1390I CCNGG 2 cut(s) 555, 927
Bme18I GGWCC 3 cut(s) 394, 551, 634
BmgT120I GGNCC 3 cut(s) 394, 551, 634
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 2 cut(s) 555, 927
BmsI GCATC 2 cut(s) 305, 866
BoxI GACNNNNGTC 1 cut(s) 182
BpmI CTGGAG 1 cut(s) 410
Bpu1102I GCTNAGC 1 cut(s) 540
BpuEI CTTGAG 2 cut(s) 238, 445
BsaJI CCNNGG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 4 cut(s) 222, 388, 428, 926
Bse3DI GCAATG 1 cut(s) 743
BseBI CCWGG 2 cut(s) 555, 927
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 350
BseLI CCNNNNNNNGG 4 cut(s) 222, 388, 428, 926
BseMI GCAATG 1 cut(s) 743
BseMII CTCAG 5 cut(s) 24, 66, 107, 388, 531
BseRI GAGGAG 1 cut(s) 987
BseXI GCAGC 3 cut(s) 576, 579, 596
BsgI GTGCAG 1 cut(s) 69
BshFI GGCC 1 cut(s) 736
BsiHKAI GWGCWC 1 cut(s) 165
BslI CCNNNNNNNGG 4 cut(s) 222, 388, 428, 926
BsmAI GTCTC 2 cut(s) 190, 467
BsnI GGCC 1 cut(s) 736
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 6 cut(s) 19, 109, 252, 826, 898, 929
Bsp1720I GCTNAGC 1 cut(s) 540
BspACI CCGC 3 cut(s) 180, 223, 733
BspANI GGCC 1 cut(s) 736
BspCNI CTCAG 5 cut(s) 25, 67, 106, 387, 532
BspLI GGNNCC 1 cut(s) 70
BspMAI CTGCAG 1 cut(s) 439
BspMI ACCTGC 1 cut(s) 430
BspPI GGATC 5 cut(s) 14, 260, 821, 893, 937
BsrDI GCAATG 1 cut(s) 743
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 6 cut(s) 19, 109, 252, 826, 898, 929
BssT1I CCWWGG 1 cut(s) 166
Bst2UI CCWGG 2 cut(s) 555, 927
Bst4CI ACNGT 2 cut(s) 812, 908
Bst6I CTCTTC 2 cut(s) 48, 999
BstAPI GCANNNNNTGC 1 cut(s) 754
BstC8I GCNNGC 1 cut(s) 589
BstDEI CTNAG 5 cut(s) 33, 75, 93, 374, 540
BstF5I GGATG 1 cut(s) 350
BstKTI GATC 6 cut(s) 22, 112, 255, 829, 901, 932
BstMAI GTCTC 2 cut(s) 190, 467
BstMBI GATC 6 cut(s) 19, 109, 252, 826, 898, 929
BstMWI GCNNNNNNNGC 4 cut(s) 68, 77, 733, 754
BstNI CCWGG 2 cut(s) 555, 927
BstNSI RCATGY 1 cut(s) 602
BstPAI GACNNNNGTC 1 cut(s) 182
BstSCI CCNGG 2 cut(s) 553, 925
BstSFI CTRYAG 1 cut(s) 435
BstV1I GCAGC 3 cut(s) 576, 579, 596
BsuRI GGCC 1 cut(s) 736
BtsCI GGATG 1 cut(s) 350
BveI ACCTGC 1 cut(s) 430
Cac8I GCNNGC 1 cut(s) 589
Cfr13I GGNCC 3 cut(s) 394, 551, 634
CsiI ACCWGGT 1 cut(s) 553
Csp6I GTAC 3 cut(s) 30, 37, 343
CspCI CAANNNNNGTGG 2 cut(s) 819, 854
CviAII CATG 4 cut(s) 148, 452, 574, 599
CviQI GTAC 3 cut(s) 30, 37, 343
DdeI CTNAG 5 cut(s) 33, 75, 93, 374, 540
DpnI GATC 6 cut(s) 21, 111, 254, 828, 900, 931
DpnII GATC 6 cut(s) 19, 109, 252, 826, 898, 929
Eam1104I CTCTTC 2 cut(s) 48, 999
EarI CTCTTC 2 cut(s) 48, 999
Ecl136II GAGCTC 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 165
Eco32I GATATC 1 cut(s) 88
Eco47I GGWCC 3 cut(s) 394, 551, 634
Eco53kI GAGCTC 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 163
EcoO109I RGGNCCY 1 cut(s) 394
EcoRII CCWGG 2 cut(s) 553, 925
EcoRV GATATC 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 166
FaeI CATG 4 cut(s) 151, 455, 577, 602
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FatI CATG 4 cut(s) 147, 451, 573, 598
FauI CCCGC 1 cut(s) 216
Fnu4HI GCNGC 4 cut(s) 565, 568, 585, 734
FokI GGATG 1 cut(s) 337
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 4 cut(s) 565, 568, 585, 734
FspBI CTAG 4 cut(s) 167, 233, 417, 854
GluI GCNGC 4 cut(s) 565, 568, 585, 734
GsuI CTGGAG 1 cut(s) 410
HaeIII GGCC 1 cut(s) 736
Hin1II CATG 4 cut(s) 151, 455, 577, 602
HinfI GANTC 2 cut(s) 458, 1037
HphI GGTGA 6 cut(s) 674, 732, 753, 765, 837, 909
Hpy166II GTNNAC 2 cut(s) 39, 457
Hpy188I TCNGA 8 cut(s) 76, 96, 126, 257, 377, 561, 655, 1042
Hpy188III TCNNGA 4 cut(s) 113, 314, 389, 632
Hpy8I GTNNAC 2 cut(s) 39, 457
HpyAV CCTTC 5 cut(s) 94, 243, 747, 768, 962
HpyCH4III ACNGT 2 cut(s) 812, 908
HpyCH4V TGCA 7 cut(s) 4, 50, 296, 437, 683, 748, 1001
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 77, 733, 754
HpyF3I CTNAG 5 cut(s) 33, 75, 93, 374, 540
Hsp92II CATG 4 cut(s) 151, 455, 577, 602
Kzo9I GATC 6 cut(s) 19, 109, 252, 826, 898, 929
LmnI GCTCC 4 cut(s) 68, 168, 865, 937
Lsp1109I GCAGC 3 cut(s) 576, 579, 596
LweI GCATC 2 cut(s) 305, 866
MabI ACCWGGT 1 cut(s) 553
MaeI CTAG 4 cut(s) 167, 233, 417, 854
MaeIII GTNAC 2 cut(s) 843, 915
MalI GATC 6 cut(s) 21, 111, 254, 828, 900, 931
MboI GATC 6 cut(s) 19, 109, 252, 826, 898, 929
MboII GAAGA 8 cut(s) 35, 109, 329, 632, 812, 884, 956, 1016
MfeI CAATTG 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 165
MlyI GAGTC 1 cut(s) 452
MroXI GAANNNNTTC 1 cut(s) 321
MseI TTAA 6 cut(s) 201, 306, 534, 752, 993, 1054
MslI CAYNNNNRTG 2 cut(s) 678, 1019
MspA1I CMGCKG 2 cut(s) 587, 733
MspR9I CCNGG 2 cut(s) 555, 927
MunI CAATTG 1 cut(s) 237
MvaI CCWGG 2 cut(s) 555, 927
MwoI GCNNNNNNNGC 4 cut(s) 68, 77, 733, 754
NdeII GATC 6 cut(s) 19, 109, 252, 826, 898, 929
NlaIII CATG 4 cut(s) 151, 455, 577, 602
NlaIV GGNNCC 1 cut(s) 70
NmuCI GTSAC 2 cut(s) 843, 915
NspI RCATGY 1 cut(s) 602
PciI ACATGT 1 cut(s) 598
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 1037
PflFI GACNNNGTC 1 cut(s) 555
PflMI CCANNNNNTGG 1 cut(s) 388
PkrI GCNGC 4 cut(s) 566, 569, 586, 735
PleI GAGTC 1 cut(s) 452
PpsI GAGTC 1 cut(s) 452
PpuMI RGGWCCY 1 cut(s) 394
PscI ACATGT 1 cut(s) 598
PshAI GACNNNNGTC 1 cut(s) 182
PshBI ATTAAT 1 cut(s) 752
Psp124BI GAGCTC 1 cut(s) 165
Psp5II RGGWCCY 1 cut(s) 394
Psp6I CCWGG 2 cut(s) 553, 925
PspGI CCWGG 2 cut(s) 553, 925
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 3 cut(s) 394, 551, 634
PspPPI RGGWCCY 1 cut(s) 394
PstI CTGCAG 1 cut(s) 439
PsyI GACNNNGTC 1 cut(s) 555
PvuII CAGCTG 1 cut(s) 587
RsaI GTAC 3 cut(s) 31, 38, 344
RsaNI GTAC 3 cut(s) 30, 37, 343
RseI CAYNNNNRTG 2 cut(s) 678, 1019
SacI GAGCTC 1 cut(s) 165
SaqAI TTAA 6 cut(s) 201, 306, 534, 752, 993, 1054
SatI GCNGC 4 cut(s) 565, 568, 585, 734
Sau3AI GATC 6 cut(s) 19, 109, 252, 826, 898, 929
Sau96I GGNCC 3 cut(s) 394, 551, 634
SchI GAGTC 1 cut(s) 452
ScrFI CCNGG 2 cut(s) 555, 927
SduI GDGCHC 1 cut(s) 165
SexAI ACCWGGT 1 cut(s) 553
SfaNI GCATC 2 cut(s) 305, 866
SfcI CTRYAG 1 cut(s) 435
SinI GGWCC 3 cut(s) 394, 551, 634
SmiMI CAYNNNNRTG 2 cut(s) 678, 1019
SmlI CTYRAG 2 cut(s) 217, 460
SmoI CTYRAG 2 cut(s) 217, 460
SsiI CCGC 3 cut(s) 180, 223, 733
SspMI CTAG 4 cut(s) 167, 233, 417, 854
SstI GAGCTC 1 cut(s) 165
StyD4I CCNGG 2 cut(s) 553, 925
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 2 cut(s) 812, 908
TaqI TCGA 1 cut(s) 1026
TatI WGTACW 2 cut(s) 36, 342
TauI GCSGC 1 cut(s) 736
TfiI GAWTC 1 cut(s) 1037
Tru1I TTAA 6 cut(s) 201, 306, 534, 752, 993, 1054
Tru9I TTAA 6 cut(s) 201, 306, 534, 752, 993, 1054
TseFI GTSAC 2 cut(s) 843, 915
TseI GCWGC 3 cut(s) 564, 567, 584
Tsp45I GTSAC 2 cut(s) 843, 915
TspDTI ATGAA 3 cut(s) 164, 440, 692
Tth111I GACNNNGTC 1 cut(s) 555
Van91I CCANNNNNTGG 1 cut(s) 388
VpaK11BI GGWCC 3 cut(s) 394, 551, 634
VspI ATTAAT 1 cut(s) 752
XapI RAATTY 4 cut(s) 320, 646, 821, 893
XceI RCATGY 1 cut(s) 602
XmaJI CCTAGG 1 cut(s) 166
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 4 cut(s) 167, 233, 417, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.