RLG00000028356
MYB Family

cheY-homologous receiver domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0014797
Physical Location & Seq
Reverse (-)
21784892 .. 21787080
2189 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028356

Sequence Viewer

Length: 1572 bp
ATGTGCAATGAGATGGCCATCTCAGTTGAATCTATGAAGACTAGACCAAAACCAGCTAAAGGTTTCAGTGTTTTGGTTGTTGATGGTGATTCTGAATGTCTAGAAATGCTGTCAAGACTACTATGGAGCTTAGGATATAAAGTTTTGACAGCTAGAGGAGCCTCTGAGGCATTAGATATCGCTCAGAAGAAGGAAGCTGATCTTGATGTTGTTCTGACAGAGGCACACTTGCCTGACATGAACAAATATGAGCTCCTAGAGAAAATGACCGCAGTCTCCAATTTACCTGTTGTTATCATGTCTGATGATGATGATATGAATGCCAAGATTGGTTGTCTGTTTAAAGGGGCTGTTTATTATATTGTGAAGCCAGTCACAACGGACAATCTCAAGAACCTATGGCAATTTGCATTAAAAAACAACAGAAATGTGGTCATAGACATTACTAAAGAGGAAAGCAATACCCATGTAGAATCACAAGCAAAGATACTGAATTCCAAAAGAGAAAGGTCAGAAGGAATGGACAATTACGAGGAGAAAGATAGCAATTGTTCAACAGCCTTTACGAAGCGAAGGGTAATATGGACTGATGAGCTGCATCATAGATTCTTGCAAGCTGTCAAACCAATAGGCATTGATGGTGCTCGTCCAAAGAAAATAATTCAGCTTATGAATGTTCCTGGACTGACGAGAAGAAATGTTTCAAGCCATTTGCAGAAATATGGCCACTCCTTGAGGCAGGAACAACTAGCAATTGAAAAGAGTAGGATCAGAGCTTCCAAATCAGCAAGTTCTCAACCAAGAAAATCTGTATCAACATTTAATTTTCAAGGAGAATTTCCCCAACTCCCAAATCTGTACTCCTCATTCACGCCATATCAACCAGAACTCAGATGCCATTTTCTGGAGGACCTCAATAGTCAAATGCCCACTAGACCTGCCTTTGGTTCTGCAGATATTCCTATTCATGTGGACTCAAGTAGTAATGAGACATCAAATAAAAAATATGGGCAACCAACACAAAGCAATCAGCTTGATTATAGTTATTTTAATGCTGAGCAAATTGGACCAGGTCAGAGCAGCAGCAACATGGATTTGGCAGCTGGCTTTGGACATGTTGAAAACTTTTTCAGGGAAGATATTTTTCAGGACCAGAACAAAAATTTCTCTGATGTTGGTGATTTTGGTCATCAAAATGCAACAGATTGCCCAATACTTCATAATTCTATACAACAAAAAGAGCAGCAGCGGCCTTCACCATTGCAATTAATGCCGTCACCACCACCATCACCACCTCCACAACCACAAGACCAAGAAGAATATAACAGTTTTGGGGAATTTGATCCACACATTCTGCTGTCACCCCTACTAGCATCACAGGAGCAAGAAGAATATAACATTTTTGGGGAATTTGATCCACACAGTCTGCTGTCACCCCTACCAGGATCACAGGAGCAAGAAGAACATGACACCTTTGGGTTTGAAGAAGGAGAAAGTGATGACTTATTTAACTTTGCAGAAGAGGACACCATTCAAGTGTTTGATGATGTGGATTCCGATGATTTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Myb_DNA-binding Response_reg

Protein Analysis

524

Amino Acids

59.12

Weight (kDa)

4.83

Isoelectric Point (pI)

58.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 24 - 132 1.9e-16 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014797)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13001
malus_domestica MD01G1047800.v1.1
prunus_persica Prupe.2G154100_v2.0.a1
pyrus_communis pycom01g07350 pycom07g11960
rosa_chinensis RchiOBHm_Chr1g0352151
rosa_laevigata RLG00000028356
rosa_roxburghii Rroxscaffold_2G00102750
rosa_rugosa Rorug01G0225100
rosa_samantha Rh1AG239100 Rh1AG239200 Rh1AG239300 Rh1BG210100 Rh1CG223700 Rh1DG236800 Rh7AG266700 Rh7CG284000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 946
AccB7I CCANNNNNTGG 1 cut(s) 904
AciI CCGC 2 cut(s) 270, 1249
AclWI GGATC 4 cut(s) 776, 1337, 1409, 1453
AcoI YGGCCR 2 cut(s) 15, 724
AcsI RAATTY 5 cut(s) 493, 836, 1162, 1337, 1409
AfaI GTAC 1 cut(s) 860
AfiI CCNNNNNNNGG 4 cut(s) 59, 904, 944, 1442
AflIII ACRYGT 1 cut(s) 1114
AgsI TTSAA 8 cut(s) 29, 555, 705, 758, 830, 1121, 1484, 1535
AjnI CCWGG 3 cut(s) 679, 1069, 1441
Alw21I GWGCWC 2 cut(s) 255, 646
Alw26I GTCTC 2 cut(s) 280, 983
AlwI GGATC 4 cut(s) 776, 1337, 1409, 1453
AoxI GGCC 3 cut(s) 15, 724, 1250
ApeKI GCWGC 6 cut(s) 595, 1080, 1083, 1100, 1243, 1246
ApoI RAATTY 5 cut(s) 493, 836, 1162, 1337, 1409
AseI ATTAAT 1 cut(s) 1268
Asp700I GAANNNNTTC 1 cut(s) 700
AspS9I GGNCC 3 cut(s) 910, 1067, 1150
AsuHPI GGTGA 7 cut(s) 98, 1190, 1248, 1269, 1281, 1353, 1425
AvaII GGWCC 3 cut(s) 910, 1067, 1150
BalI TGGCCA 2 cut(s) 17, 726
BanII GRGCYC 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 44
Bbv12I GWGCWC 2 cut(s) 255, 646
BbvI GCAGC 6 cut(s) 582, 1092, 1095, 1112, 1255, 1258
BccI CCATC 5 cut(s) 7, 26, 77, 632, 1294
BceAI ACGGC 1 cut(s) 1258
BciT130I CCWGG 3 cut(s) 681, 1071, 1443
BcoDI GTCTC 2 cut(s) 280, 983
BfaI CTAG 7 cut(s) 42, 101, 153, 257, 749, 933, 1370
BfmI CTRYAG 1 cut(s) 951
BfuAI ACCTGC 1 cut(s) 946
BglI GCCNNNNNGGC 1 cut(s) 167
BisI GCNGC 7 cut(s) 596, 1081, 1084, 1101, 1244, 1247, 1250
BlpI GCTNAGC 1 cut(s) 1056
BlsI GCNGC 7 cut(s) 597, 1082, 1085, 1102, 1245, 1248, 1251
Bme1390I CCNGG 3 cut(s) 681, 1071, 1443
Bme18I GGWCC 3 cut(s) 910, 1067, 1150
BmgT120I GGNCC 3 cut(s) 910, 1067, 1150
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 3 cut(s) 681, 1071, 1443
BmsI GCATC 3 cut(s) 607, 884, 1382
BoxI GACNNNNGTC 1 cut(s) 272
BpiI GAAGAC 1 cut(s) 44
BpmI CTGGAG 1 cut(s) 926
Bpu10I CCTNAGC 1 cut(s) 130
Bpu1102I GCTNAGC 1 cut(s) 1056
BpuEI CTTGAG 3 cut(s) 374, 754, 961
BsaBI GATNNNNATC 1 cut(s) 17
Bsc4I CCNNNNNNNGG 4 cut(s) 59, 904, 944, 1442
Bse1I ACTGG 1 cut(s) 371
Bse3DI GCAATG 2 cut(s) 13, 1259
Bse8I GATNNNNATC 1 cut(s) 17
BseBI CCWGG 3 cut(s) 681, 1071, 1443
BseJI GATNNNNATC 1 cut(s) 17
BseLI CCNNNNNNNGG 4 cut(s) 59, 904, 944, 1442
BseMI GCAATG 2 cut(s) 13, 1259
BseMII CTCAG 5 cut(s) 36, 156, 197, 904, 1047
BseNI ACTGG 1 cut(s) 371
BseRI GAGGAG 3 cut(s) 171, 548, 853
BseXI GCAGC 6 cut(s) 582, 1092, 1095, 1112, 1255, 1258
BshFI GGCC 3 cut(s) 17, 726, 1252
BsiHKAI GWGCWC 2 cut(s) 255, 646
BslI CCNNNNNNNGG 4 cut(s) 59, 904, 944, 1442
BsmAI GTCTC 2 cut(s) 280, 983
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 3 cut(s) 17, 726, 1252
Bsp1286I GDGCHC 2 cut(s) 255, 646
Bsp143I GATC 5 cut(s) 199, 768, 1342, 1414, 1445
Bsp1720I GCTNAGC 1 cut(s) 1056
BspACI CCGC 2 cut(s) 270, 1249
BspANI GGCC 3 cut(s) 17, 726, 1252
BspCNI CTCAG 5 cut(s) 35, 157, 196, 903, 1048
BspLI GGNNCC 1 cut(s) 160
BspMAI CTGCAG 1 cut(s) 955
BspMI ACCTGC 1 cut(s) 946
BspPI GGATC 4 cut(s) 776, 1337, 1409, 1453
BsrDI GCAATG 2 cut(s) 13, 1259
BsrI ACTGG 1 cut(s) 371
BssMI GATC 5 cut(s) 199, 768, 1342, 1414, 1445
Bst2UI CCWGG 3 cut(s) 681, 1071, 1443
Bst4CI ACNGT 2 cut(s) 1328, 1424
Bst6I CTCTTC 1 cut(s) 1515
BstAPI GCANNNNNTGC 1 cut(s) 1270
BstC8I GCNNGC 2 cut(s) 615, 1105
BstDEI CTNAG 6 cut(s) 22, 130, 165, 183, 890, 1056
BstKTI GATC 5 cut(s) 202, 771, 1345, 1417, 1448
BstMAI GTCTC 2 cut(s) 280, 983
BstMBI GATC 5 cut(s) 199, 768, 1342, 1414, 1445
BstMWI GCNNNNNNNGC 4 cut(s) 158, 167, 1249, 1270
BstNI CCWGG 3 cut(s) 681, 1071, 1443
BstNSI RCATGY 1 cut(s) 1118
BstPAI GACNNNNGTC 1 cut(s) 272
BstSCI CCNGG 3 cut(s) 679, 1069, 1441
BstSFI CTRYAG 1 cut(s) 951
BstV1I GCAGC 6 cut(s) 582, 1092, 1095, 1112, 1255, 1258
BstV2I GAAGAC 1 cut(s) 44
BsuRI GGCC 3 cut(s) 17, 726, 1252
BtsIMutI CAGTG 1 cut(s) 73
BveI ACCTGC 1 cut(s) 946
Cac8I GCNNGC 2 cut(s) 615, 1105
Cfr13I GGNCC 3 cut(s) 910, 1067, 1150
CsiI ACCWGGT 1 cut(s) 1069
Csp6I GTAC 1 cut(s) 859
CviAII CATG 7 cut(s) 238, 298, 467, 968, 1090, 1115, 1466
CviQI GTAC 1 cut(s) 859
DdeI CTNAG 6 cut(s) 22, 130, 165, 183, 890, 1056
DpnI GATC 5 cut(s) 201, 770, 1344, 1416, 1447
DpnII GATC 5 cut(s) 199, 768, 1342, 1414, 1445
DraI TTTAAA 1 cut(s) 343
EaeI YGGCCR 2 cut(s) 15, 724
Eam1104I CTCTTC 1 cut(s) 1515
EarI CTCTTC 1 cut(s) 1515
Ecl136II GAGCTC 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 255
Eco32I GATATC 1 cut(s) 178
Eco47I GGWCC 3 cut(s) 910, 1067, 1150
Eco53kI GAGCTC 1 cut(s) 253
EcoICRI GAGCTC 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 910
EcoRI GAATTC 1 cut(s) 493
EcoRII CCWGG 3 cut(s) 679, 1069, 1441
EcoRV GATATC 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 255
FaeI CATG 7 cut(s) 241, 301, 470, 971, 1093, 1118, 1469
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FatI CATG 7 cut(s) 237, 297, 466, 967, 1089, 1114, 1465
Fnu4HI GCNGC 7 cut(s) 596, 1081, 1084, 1101, 1244, 1247, 1250
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 7 cut(s) 596, 1081, 1084, 1101, 1244, 1247, 1250
FspBI CTAG 7 cut(s) 42, 101, 153, 257, 749, 933, 1370
GluI GCNGC 7 cut(s) 596, 1081, 1084, 1101, 1244, 1247, 1250
GsuI CTGGAG 1 cut(s) 926
HaeIII GGCC 3 cut(s) 17, 726, 1252
Hin1II CATG 7 cut(s) 241, 301, 470, 971, 1093, 1118, 1469
HinfI GANTC 6 cut(s) 29, 89, 473, 606, 974, 1553
HphI GGTGA 7 cut(s) 98, 1190, 1248, 1269, 1281, 1353, 1425
Hpy166II GTNNAC 1 cut(s) 973
Hpy188III TCNNGA 6 cut(s) 101, 114, 203, 391, 905, 1148
Hpy8I GTNNAC 1 cut(s) 973
HpyAV CCTTC 5 cut(s) 184, 509, 567, 1263, 1481
HpyCH4III ACNGT 2 cut(s) 1328, 1424
HpyCH4V TGCA 9 cut(s) 6, 410, 598, 613, 715, 953, 1199, 1264, 1517
HpyF10VI GCNNNNNNNGC 4 cut(s) 158, 167, 1249, 1270
HpyF3I CTNAG 6 cut(s) 22, 130, 165, 183, 890, 1056
Hsp92II CATG 7 cut(s) 241, 301, 470, 971, 1093, 1118, 1469
Kzo9I GATC 5 cut(s) 199, 768, 1342, 1414, 1445
LmnI GCTCC 5 cut(s) 126, 158, 258, 1381, 1453
Lsp1109I GCAGC 6 cut(s) 582, 1092, 1095, 1112, 1255, 1258
LweI GCATC 3 cut(s) 607, 884, 1382
MabI ACCWGGT 1 cut(s) 1069
MaeI CTAG 7 cut(s) 42, 101, 153, 257, 749, 933, 1370
MaeIII GTNAC 4 cut(s) 373, 1275, 1359, 1431
MalI GATC 5 cut(s) 201, 770, 1344, 1416, 1447
MboI GATC 5 cut(s) 199, 768, 1342, 1414, 1445
MboII GAAGA 9 cut(s) 49, 199, 705, 1148, 1328, 1400, 1472, 1496, 1532
MfeI CAATTG 2 cut(s) 547, 753
MhlI GDGCHC 2 cut(s) 255, 646
MlsI TGGCCA 2 cut(s) 17, 726
MluNI TGGCCA 2 cut(s) 17, 726
MlyI GAGTC 1 cut(s) 968
Mox20I TGGCCA 2 cut(s) 17, 726
MroXI GAANNNNTTC 1 cut(s) 700
MscI TGGCCA 2 cut(s) 17, 726
MseI TTAA 7 cut(s) 342, 413, 822, 1050, 1268, 1509, 1570
MslI CAYNNNNRTG 2 cut(s) 1194, 1535
Msp20I TGGCCA 2 cut(s) 17, 726
MspA1I CMGCKG 2 cut(s) 1103, 1249
MspR9I CCNGG 3 cut(s) 681, 1071, 1443
MunI CAATTG 2 cut(s) 547, 753
Mva1269I GAATGC 1 cut(s) 325
MvaI CCWGG 3 cut(s) 681, 1071, 1443
MwoI GCNNNNNNNGC 4 cut(s) 158, 167, 1249, 1270
NdeII GATC 5 cut(s) 199, 768, 1342, 1414, 1445
NlaIII CATG 7 cut(s) 241, 301, 470, 971, 1093, 1118, 1469
NlaIV GGNNCC 1 cut(s) 160
NmuCI GTSAC 4 cut(s) 373, 1275, 1359, 1431
NspI RCATGY 1 cut(s) 1118
PciI ACATGT 1 cut(s) 1114
PctI GAATGC 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 700
PfeI GAWTC 5 cut(s) 29, 89, 473, 606, 1553
PflFI GACNNNGTC 1 cut(s) 1071
PflMI CCANNNNNTGG 1 cut(s) 904
PfoI TCCNGGA 1 cut(s) 679
PkrI GCNGC 7 cut(s) 597, 1082, 1085, 1102, 1245, 1248, 1251
PleI GAGTC 1 cut(s) 968
PpsI GAGTC 1 cut(s) 968
PpuMI RGGWCCY 1 cut(s) 910
PscI ACATGT 1 cut(s) 1114
PshAI GACNNNNGTC 1 cut(s) 272
PshBI ATTAAT 1 cut(s) 1268
Psp124BI GAGCTC 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 910
Psp6I CCWGG 3 cut(s) 679, 1069, 1441
PspGI CCWGG 3 cut(s) 679, 1069, 1441
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 3 cut(s) 910, 1067, 1150
PspPPI RGGWCCY 1 cut(s) 910
PstI CTGCAG 1 cut(s) 955
PsyI GACNNNGTC 1 cut(s) 1071
PvuII CAGCTG 1 cut(s) 1103
RsaI GTAC 1 cut(s) 860
RsaNI GTAC 1 cut(s) 859
RseI CAYNNNNRTG 2 cut(s) 1194, 1535
SacI GAGCTC 1 cut(s) 255
SaqAI TTAA 7 cut(s) 342, 413, 822, 1050, 1268, 1509, 1570
SatI GCNGC 7 cut(s) 596, 1081, 1084, 1101, 1244, 1247, 1250
Sau3AI GATC 5 cut(s) 199, 768, 1342, 1414, 1445
Sau96I GGNCC 3 cut(s) 910, 1067, 1150
SchI GAGTC 1 cut(s) 968
ScrFI CCNGG 3 cut(s) 681, 1071, 1443
SduI GDGCHC 2 cut(s) 255, 646
SexAI ACCWGGT 1 cut(s) 1069
SfaNI GCATC 3 cut(s) 607, 884, 1382
SfcI CTRYAG 1 cut(s) 951
SinI GGWCC 3 cut(s) 910, 1067, 1150
SmiMI CAYNNNNRTG 2 cut(s) 1194, 1535
SmlI CTYRAG 3 cut(s) 389, 733, 976
SmoI CTYRAG 3 cut(s) 389, 733, 976
SsiI CCGC 2 cut(s) 270, 1249
SspMI CTAG 7 cut(s) 42, 101, 153, 257, 749, 933, 1370
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 3 cut(s) 679, 1069, 1441
TaaI ACNGT 2 cut(s) 1328, 1424
TatI WGTACW 1 cut(s) 858
TauI GCSGC 1 cut(s) 1252
TfiI GAWTC 5 cut(s) 29, 89, 473, 606, 1553
Tru1I TTAA 7 cut(s) 342, 413, 822, 1050, 1268, 1509, 1570
Tru9I TTAA 7 cut(s) 342, 413, 822, 1050, 1268, 1509, 1570
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 4 cut(s) 373, 1275, 1359, 1431
TseI GCWGC 6 cut(s) 595, 1080, 1083, 1100, 1243, 1246
Tsp45I GTSAC 4 cut(s) 373, 1275, 1359, 1431
TspDTI ATGAA 6 cut(s) 50, 254, 332, 686, 956, 1208
TspGWI ACGGA 1 cut(s) 395
TspRI CASTG 1 cut(s) 73
Tth111I GACNNNGTC 1 cut(s) 1071
Van91I CCANNNNNTGG 1 cut(s) 904
VpaK11BI GGWCC 3 cut(s) 910, 1067, 1150
VspI ATTAAT 1 cut(s) 1268
XapI RAATTY 5 cut(s) 493, 836, 1162, 1337, 1409
XbaI TCTAGA 1 cut(s) 100
XceI RCATGY 1 cut(s) 1118
XmnI GAANNNNTTC 1 cut(s) 700
XspI CTAG 7 cut(s) 42, 101, 153, 257, 749, 933, 1370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.