Prupe.2G154100_v2.0.a1
MYB Family

cheY-homologous receiver domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014797
Physical Location & Seq
Forward (+)
20815857 .. 20818281
2425 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G154100.1

Sequence Viewer

Length: 1710 bp
ATGAGCGATGAGAAGGCCATCTCAATTGAATCTGTGAACAGTTCTAGTCCAAGACTTGAAGCTGTCAGTGTTTTGGTTGTTGATGGTGATTCTGCATGTCTTGCAATACTATCAAGAATGCTCTATAACTTGGGGTATAAGGCAGTTATGACAGCCAAAAGAGCCTATGATGCACTATCCATAGCTCAGAAGAAGGAAGATGAGCTTCATCTTGTGCTGACAGAGGCTCACTTGCCTGACATGGATAAATATGAGCTCTTAGAGAAAATGAAAGCAGTTTCCAAAGTACCAGTTGTTATTATGTCTGATGATGACGATGAGAATGCTATGTTGGGTGGGCTGTTTAAAGGAGCTGTATTTTATTTTGTTAAACCACTCACAATCAACAGCCTAAAAAACCTATGGCAGTTTGCAATCATCAAGAACAGAAATCATGTGGTGATAGATTTCACTGAAGAGGAAAGTAGTGTTTATGCTGAATCCCAGCAGGAGAATACATCAAATGAGGGCTTGGAGAGAGACTCATTCATGACGAGAGACCGATGGTTGGAAAGAAAAAACCCTGAAGGGACATACAAAGACGAGGAAAGAGAGAATTCTGATTCAACTTCCCAAAAGAAGCCAAAGCTAGTTTGGACCAATGAGCTACATAAGAGATTCTTGCTAGCAGTCAGATTGCTAGGAGTTGATAGTGCTCATCCAAAGAAAATACTTCAGCATATGAATGTCCCTGGACTCAGGAAAGAAAATGTTTCAAGCCATTTACAGAAATATCGCCTCTCGTTGAAGAGGGAACAAGAAGCAATCATGAAGGCCAGGGCCAGAGGTCCCAAAAAATCAAATTTCCCATCACACCAATCTTTATCAACATTAAATTTTCGAGGAGGCTGTTCTCATACCTTGAACCGGTACTCGACCTCAACAGCATATCAACCAAAACGCAGAAGCCATGTTCAGGACCTCAGTAGTCACATGTCTAGACCTTCCCCTGCAGGTTCTGTATGTTTTCCAAGTCAAGTTTACTCAAGTGGGCATCCAACTCTAGGCAATGAGTCAAGTTTTACATCAATGCCATACCATTCAAATTATAAAAATGGGCAACCAACTCTAAACAACCAGCTAGATTATACTAATGATCATAATACTAATCACATTGGAAATAGGATCACCAGCAACAAGGAATTGGCTGGCTTTAGACAGGTGGGGAGCTTTGTCAGATACAGTAATTTTGATGGGAACAAGACCTTCTCTACTTTTGGAGATCATGGTCATTCAAATTTAGTAGATTTCCCAATATTCCTTCATAATTCTACACAACAAGAAGAGCAACAGCAGAAGCAACTTCAACCACAGGTTCTGTTTTCTCCACCATTGCAAATGCCTTCTCCGCCGCCGCAGCCAAAGGAGCAACAACAAAACGACATTCTTGGGCAGGAAAGGCAACTTCAACCACAGTTTCTGCCATCAGCACCATTGCAAATGCCTTCACCATCACCTCTCCCAGCAGCAGCAGAGCAGCAAGGAGAACAAGATGACATTTTTGGGCTTGAAAGCCAACTTATGCAGTCACCACAATGGCATATGCCTTCAATGCCAGCAGCACCAACAGCACATGAGCAAGAGAAAGATGACCCGTTTGGGATTGAAAGTGAAGAAACTGATGACTTATTTGACATTGCAAAAGGCACCACTCAACATTTCAATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Myb_DNA-binding Response_reg

Protein Analysis

570

Amino Acids

64.27

Weight (kDa)

6.04

Isoelectric Point (pI)

64.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014797)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13001
malus_domestica MD01G1047800.v1.1
prunus_persica Prupe.2G154100_v2.0.a1
pyrus_communis pycom01g07350 pycom07g11960
rosa_chinensis RchiOBHm_Chr1g0352151
rosa_laevigata RLG00000028356
rosa_roxburghii Rroxscaffold_2G00102750
rosa_rugosa Rorug01G0225100
rosa_samantha Rh1AG239100 Rh1AG239200 Rh1AG239300 Rh1BG210100 Rh1CG223700 Rh1DG236800 Rh7AG266700 Rh7CG284000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1089
Acc36I ACCTGC 1 cut(s) 983
AccB1I GGYRCC 1 cut(s) 1685
AciI CCGC 3 cut(s) 1388, 1391, 1394
AclWI GGATC 1 cut(s) 1172
AcsI RAATTY 4 cut(s) 595, 841, 874, 1276
AcuI CTGAAG 3 cut(s) 474, 585, 698
AfaI GTAC 2 cut(s) 288, 911
AfiI CCNNNNNNNGG 4 cut(s) 547, 906, 955, 1043
AflIII ACRYGT 1 cut(s) 972
AgeI ACCGGT 1 cut(s) 906
AjnI CCWGG 2 cut(s) 730, 815
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AluBI AGCT 9 cut(s) 62, 185, 205, 256, 353, 628, 646, 1120, 1209
AluI AGCT 9 cut(s) 62, 185, 205, 256, 353, 628, 646, 1120, 1209
Alw21I GWGCWC 2 cut(s) 258, 697
Alw26I GTCTC 2 cut(s) 513, 531
AlwI GGATC 1 cut(s) 1172
AlwNI CAGNNNCTG 3 cut(s) 998, 1357, 1459
AoxI GGCC 3 cut(s) 15, 813, 819
ApeKI GCWGC 5 cut(s) 1396, 1505, 1508, 1516, 1598
ApoI RAATTY 4 cut(s) 595, 841, 874, 1276
AsiGI ACCGGT 1 cut(s) 906
AspS9I GGNCC 4 cut(s) 636, 819, 827, 958
AsuHPI GGTGA 6 cut(s) 98, 451, 1159, 1479, 1485, 1560
AsuNHI GCTAGC 1 cut(s) 664
AvaII GGWCC 3 cut(s) 636, 827, 958
BanI GGYRCC 1 cut(s) 1685
BanII GRGCYC 1 cut(s) 258
Bbv12I GWGCWC 2 cut(s) 258, 697
BbvI GCAGC 5 cut(s) 1408, 1517, 1520, 1528, 1610
BccI CCATC 7 cut(s) 26, 77, 537, 856, 1226, 1471, 1498
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 2 cut(s) 732, 817
BclI TGATCA 1 cut(s) 1135
BcoDI GTCTC 2 cut(s) 513, 531
BfaI CTAG 7 cut(s) 45, 629, 665, 680, 978, 1043, 1121
BfmI CTRYAG 1 cut(s) 990
BfuAI ACCTGC 1 cut(s) 983
BisI GCNGC 7 cut(s) 1391, 1394, 1397, 1506, 1509, 1517, 1599
BlsI GCNGC 7 cut(s) 1392, 1395, 1398, 1507, 1510, 1518, 1600
Bme1390I CCNGG 2 cut(s) 732, 817
Bme18I GGWCC 3 cut(s) 636, 827, 958
BmgT120I GGNCC 4 cut(s) 636, 819, 827, 958
BmiI GGNNCC 2 cut(s) 829, 1687
BmrFI CCNGG 2 cut(s) 732, 817
BmsI GCATC 2 cut(s) 160, 1042
BmtI GCTAGC 1 cut(s) 668
BplI GAGNNNNNCTC 2 cut(s) 506, 538
BpuEI CTTGAG 1 cut(s) 1009
BsaI GGTCTC 1 cut(s) 531
BsaJI CCNNGG 2 cut(s) 730, 816
BsaWI WCCGGW 1 cut(s) 906
Bsc4I CCNNNNNNNGG 4 cut(s) 547, 906, 955, 1043
Bse118I RCCGGY 1 cut(s) 906
Bse1I ACTGG 1 cut(s) 290
Bse3DI GCAATG 4 cut(s) 1054, 1370, 1472, 1674
BseBI CCWGG 2 cut(s) 732, 817
BseDI CCNNGG 2 cut(s) 730, 816
BseGI GGATG 2 cut(s) 697, 1033
BseLI CCNNNNNNNGG 4 cut(s) 547, 906, 955, 1043
BseMI GCAATG 4 cut(s) 1054, 1370, 1472, 1674
BseMII CTCAG 3 cut(s) 200, 751, 976
BseNI ACTGG 1 cut(s) 290
BseRI GAGGAG 1 cut(s) 897
BseXI GCAGC 5 cut(s) 1408, 1517, 1520, 1528, 1610
BseYI CCCAGC 2 cut(s) 483, 1501
BshFI GGCC 3 cut(s) 17, 815, 821
BshNI GGYRCC 1 cut(s) 1685
BshTI ACCGGT 1 cut(s) 906
BsiHKAI GWGCWC 2 cut(s) 258, 697
BsiSI CCGG 1 cut(s) 907
BslFI GGGAC 3 cut(s) 583, 713, 813
BslI CCNNNNNNNGG 4 cut(s) 547, 906, 955, 1043
BsmAI GTCTC 2 cut(s) 513, 531
BsmFI GGGAC 3 cut(s) 583, 713, 813
BsmI GAATGC 2 cut(s) 123, 328
BsnI GGCC 3 cut(s) 17, 815, 821
Bso31I GGTCTC 1 cut(s) 531
Bsp1286I GDGCHC 2 cut(s) 258, 697
Bsp143I GATC 3 cut(s) 1135, 1164, 1261
BspACI CCGC 3 cut(s) 1388, 1391, 1394
BspANI GGCC 3 cut(s) 17, 815, 821
BspCNI CTCAG 3 cut(s) 199, 750, 975
BspHI TCATGA 2 cut(s) 528, 807
BspLI GGNNCC 2 cut(s) 829, 1687
BspMAI CTGCAG 1 cut(s) 994
BspMI ACCTGC 1 cut(s) 983
BspOI GCTAGC 1 cut(s) 668
BspPI GGATC 1 cut(s) 1172
BspQI GCTCTTC 1 cut(s) 1317
BspT107I GGYRCC 1 cut(s) 1685
BspTNI GGTCTC 1 cut(s) 531
BsrDI GCAATG 4 cut(s) 1054, 1370, 1472, 1674
BsrFI RCCGGY 1 cut(s) 906
BsrI ACTGG 1 cut(s) 290
BssAI RCCGGY 1 cut(s) 906
BssECI CCNNGG 2 cut(s) 730, 816
BssMI GATC 3 cut(s) 1135, 1164, 1261
Bst2UI CCWGG 2 cut(s) 732, 817
Bst4CI ACNGT 3 cut(s) 41, 1223, 1455
Bst6I CTCTTC 3 cut(s) 450, 782, 1317
BstAPI GCANNNNNTGC 1 cut(s) 101
BstC8I GCNNGC 3 cut(s) 666, 1189, 1596
BstDEI CTNAG 4 cut(s) 186, 259, 737, 962
BstF5I GGATG 2 cut(s) 697, 1033
BstKTI GATC 3 cut(s) 1138, 1167, 1264
BstMAI GTCTC 2 cut(s) 513, 531
BstMBI GATC 3 cut(s) 1135, 1164, 1261
BstMWI GCNNNNNNNGC 9 cut(s) 101, 161, 170, 1387, 1396, 1405, 1438, 1591, 1607
BstNI CCWGG 2 cut(s) 732, 817
BstNSI RCATGY 2 cut(s) 99, 976
BstSCI CCNGG 2 cut(s) 730, 815
BstSFI CTRYAG 1 cut(s) 990
BstV1I GCAGC 5 cut(s) 1408, 1517, 1520, 1528, 1610
BsuRI GGCC 3 cut(s) 17, 815, 821
BtgZI GCGATG 1 cut(s) 21
BtsCI GGATG 2 cut(s) 697, 1033
BtsIMutI CAGTG 2 cut(s) 73, 450
BveI ACCTGC 1 cut(s) 983
Cac8I GCNNGC 3 cut(s) 666, 1189, 1596
CaiI CAGNNNCTG 3 cut(s) 998, 1357, 1459
CciI TCATGA 2 cut(s) 528, 807
Cfr10I RCCGGY 1 cut(s) 906
Cfr13I GGNCC 4 cut(s) 636, 819, 827, 958
Csp6I GTAC 2 cut(s) 287, 910
CspAI ACCGGT 1 cut(s) 906
CviAII CATG 9 cut(s) 96, 241, 434, 529, 808, 950, 973, 1265, 1613
CviQI GTAC 2 cut(s) 287, 910
DdeI CTNAG 4 cut(s) 186, 259, 737, 962
DpnI GATC 3 cut(s) 1137, 1166, 1263
DpnII GATC 3 cut(s) 1135, 1164, 1261
DraI TTTAAA 1 cut(s) 346
Eam1104I CTCTTC 3 cut(s) 450, 782, 1317
EarI CTCTTC 3 cut(s) 450, 782, 1317
EciI GGCGGA 1 cut(s) 1377
Ecl136II GAGCTC 1 cut(s) 256
Eco24I GRGCYC 1 cut(s) 258
Eco31I GGTCTC 1 cut(s) 531
Eco47I GGWCC 3 cut(s) 636, 827, 958
Eco53kI GAGCTC 1 cut(s) 256
Eco57I CTGAAG 3 cut(s) 474, 585, 698
EcoICRI GAGCTC 1 cut(s) 256
EcoO109I RGGNCCY 2 cut(s) 827, 958
EcoRI GAATTC 1 cut(s) 595
EcoRII CCWGG 2 cut(s) 730, 815
EcoT38I GRGCYC 1 cut(s) 258
FaeI CATG 9 cut(s) 99, 244, 437, 532, 811, 953, 976, 1268, 1616
FalI AAGNNNNNCTT 4 cut(s) 189, 221, 644, 676
FaqI GGGAC 3 cut(s) 583, 713, 813
FatI CATG 9 cut(s) 95, 240, 433, 528, 807, 949, 972, 1264, 1612
FauNDI CATATG 2 cut(s) 720, 1581
FbaI TGATCA 1 cut(s) 1135
Fnu4HI GCNGC 7 cut(s) 1391, 1394, 1397, 1506, 1509, 1517, 1599
FokI GGATG 2 cut(s) 684, 1020
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 7 cut(s) 1391, 1394, 1397, 1506, 1509, 1517, 1599
FspBI CTAG 7 cut(s) 45, 629, 665, 680, 978, 1043, 1121
GluI GCNGC 7 cut(s) 1391, 1394, 1397, 1506, 1509, 1517, 1599
GsaI CCCAGC 2 cut(s) 487, 1505
HaeIII GGCC 3 cut(s) 17, 815, 821
HapII CCGG 1 cut(s) 907
Hin1II CATG 9 cut(s) 99, 244, 437, 532, 811, 953, 976, 1268, 1616
HinfI GANTC 8 cut(s) 29, 89, 479, 521, 602, 657, 735, 1052
HpaII CCGG 1 cut(s) 907
HphI GGTGA 6 cut(s) 98, 451, 1159, 1479, 1485, 1560
Hpy166II GTNNAC 2 cut(s) 37, 1021
Hpy188I TCNGA 5 cut(s) 189, 307, 601, 674, 1217
Hpy188III TCNNGA 7 cut(s) 114, 421, 529, 739, 808, 956, 978
Hpy8I GTNNAC 2 cut(s) 37, 1021
HpyCH4III ACNGT 3 cut(s) 41, 1223, 1455
HpyCH4V TGCA 9 cut(s) 95, 104, 173, 413, 992, 1375, 1477, 1564, 1679
HpyF10VI GCNNNNNNNGC 9 cut(s) 101, 161, 170, 1387, 1396, 1405, 1438, 1591, 1607
HpyF3I CTNAG 4 cut(s) 186, 259, 737, 962
Hsp92II CATG 9 cut(s) 99, 244, 437, 532, 811, 953, 976, 1268, 1616
Ksp22I TGATCA 1 cut(s) 1135
Kzo9I GATC 3 cut(s) 1135, 1164, 1261
LguI GCTCTTC 1 cut(s) 1317
LmnI GCTCC 3 cut(s) 350, 1206, 1405
Lsp1109I GCAGC 5 cut(s) 1408, 1517, 1520, 1528, 1610
LweI GCATC 2 cut(s) 160, 1042
MaeI CTAG 7 cut(s) 45, 629, 665, 680, 978, 1043, 1121
MaeIII GTNAC 2 cut(s) 968, 1566
MalI GATC 3 cut(s) 1137, 1166, 1263
MboI GATC 3 cut(s) 1135, 1164, 1261
MboII GAAGA 6 cut(s) 202, 209, 467, 799, 1334, 1664
MfeI CAATTG 1 cut(s) 24
MhlI GDGCHC 2 cut(s) 258, 697
MluCI AATT 9 cut(s) 24, 595, 841, 874, 1084, 1181, 1225, 1276, 1306
MlyI GAGTC 3 cut(s) 515, 729, 1061
MmeI TCCRAC 2 cut(s) 528, 1061
MseI TTAA 4 cut(s) 345, 369, 872, 1708
MslI CAYNNNNRTG 3 cut(s) 723, 1573, 1701
MspI CCGG 1 cut(s) 907
MspR9I CCNGG 2 cut(s) 732, 817
MunI CAATTG 1 cut(s) 24
Mva1269I GAATGC 2 cut(s) 123, 328
MvaI CCWGG 2 cut(s) 732, 817
MwoI GCNNNNNNNGC 9 cut(s) 101, 161, 170, 1387, 1396, 1405, 1438, 1591, 1607
NdeI CATATG 2 cut(s) 720, 1581
NdeII GATC 3 cut(s) 1135, 1164, 1261
NheI GCTAGC 1 cut(s) 664
NlaIII CATG 9 cut(s) 99, 244, 437, 532, 811, 953, 976, 1268, 1616
NlaIV GGNNCC 2 cut(s) 829, 1687
NmuCI GTSAC 2 cut(s) 968, 1566
NspI RCATGY 2 cut(s) 99, 976
PagI TCATGA 2 cut(s) 528, 807
PciI ACATGT 1 cut(s) 972
PciSI GCTCTTC 1 cut(s) 1317
PctI GAATGC 2 cut(s) 123, 328
PfeI GAWTC 5 cut(s) 29, 89, 479, 602, 657
PinAI ACCGGT 1 cut(s) 906
PkrI GCNGC 7 cut(s) 1392, 1395, 1398, 1507, 1510, 1518, 1600
PleI GAGTC 3 cut(s) 515, 729, 1060
PpsI GAGTC 3 cut(s) 515, 729, 1060
PpuMI RGGWCCY 2 cut(s) 827, 958
PscI ACATGT 1 cut(s) 972
PsiI TTATAA 1 cut(s) 1089
Psp124BI GAGCTC 1 cut(s) 258
Psp5II RGGWCCY 2 cut(s) 827, 958
Psp6I CCWGG 2 cut(s) 730, 815
PspFI CCCAGC 2 cut(s) 483, 1501
PspGI CCWGG 2 cut(s) 730, 815
PspN4I GGNNCC 2 cut(s) 829, 1687
PspPI GGNCC 4 cut(s) 636, 819, 827, 958
PspPPI RGGWCCY 2 cut(s) 827, 958
PstI CTGCAG 1 cut(s) 994
PstNI CAGNNNCTG 3 cut(s) 998, 1357, 1459
RsaI GTAC 2 cut(s) 288, 911
RsaNI GTAC 2 cut(s) 287, 910
RseI CAYNNNNRTG 3 cut(s) 723, 1573, 1701
SacI GAGCTC 1 cut(s) 258
SapI GCTCTTC 1 cut(s) 1317
SaqAI TTAA 4 cut(s) 345, 369, 872, 1708
SatI GCNGC 7 cut(s) 1391, 1394, 1397, 1506, 1509, 1517, 1599
Sau3AI GATC 3 cut(s) 1135, 1164, 1261
Sau96I GGNCC 4 cut(s) 636, 819, 827, 958
SbfI CCTGCAGG 1 cut(s) 994
SchI GAGTC 3 cut(s) 515, 729, 1061
ScrFI CCNGG 2 cut(s) 732, 817
SdaI CCTGCAGG 1 cut(s) 994
SduI GDGCHC 2 cut(s) 258, 697
SfaNI GCATC 2 cut(s) 160, 1042
SfcI CTRYAG 1 cut(s) 990
SinI GGWCC 3 cut(s) 636, 827, 958
SmiMI CAYNNNNRTG 3 cut(s) 723, 1573, 1701
SmlI CTYRAG 1 cut(s) 1024
SmoI CTYRAG 1 cut(s) 1024
Sse8387I CCTGCAGG 1 cut(s) 994
Sse9I AATT 9 cut(s) 24, 595, 841, 874, 1084, 1181, 1225, 1276, 1306
SsiI CCGC 3 cut(s) 1388, 1391, 1394
SspI AATATT 1 cut(s) 1296
SspMI CTAG 7 cut(s) 45, 629, 665, 680, 978, 1043, 1121
SstI GAGCTC 1 cut(s) 258
StyD4I CCNGG 2 cut(s) 730, 815
TaaI ACNGT 3 cut(s) 41, 1223, 1455
TaqI TCGA 2 cut(s) 880, 914
TaqII GACCGA 1 cut(s) 555
TasI AATT 9 cut(s) 24, 595, 841, 874, 1084, 1181, 1225, 1276, 1306
TauI GCSGC 2 cut(s) 1393, 1396
TfiI GAWTC 5 cut(s) 29, 89, 479, 602, 657
Tru1I TTAA 4 cut(s) 345, 369, 872, 1708
Tru9I TTAA 4 cut(s) 345, 369, 872, 1708
TscAI CASTG 2 cut(s) 73, 457
TseFI GTSAC 2 cut(s) 968, 1566
TseI GCWGC 5 cut(s) 1396, 1505, 1508, 1516, 1598
Tsp45I GTSAC 2 cut(s) 968, 1566
TspDTI ATGAA 6 cut(s) 197, 284, 517, 737, 824, 1292
TspRI CASTG 2 cut(s) 73, 457
VpaK11BI GGWCC 3 cut(s) 636, 827, 958
XapI RAATTY 4 cut(s) 595, 841, 874, 1276
XbaI TCTAGA 1 cut(s) 977
XceI RCATGY 2 cut(s) 99, 976
XcmI CCANNNNNNNNNTGG 1 cut(s) 630
XspI CTAG 7 cut(s) 45, 629, 665, 680, 978, 1043, 1121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.