Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0014799

Physical Location & Seq

Genomic Coordinates Reverse (-)

11909226 .. 11913768

Gene Structure 4543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13230.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGAGGTACTCACTTCTATTCTCCACAAAGTTACAGGATCTCAGTCTCCGATTCGATGGGACGAGCACAACTTGACCTTGATCGGTTCCGGCTCATCTGGGCCTGTCTACTTGGCCAAAGATCAGTCTGGATTCCCTATTGCTGTCAAAAAGGCTCACATCAGGGAGCTGGATGAAGTGAAGCTTCTATCAAAATTGTCTCATAAGAACATTGTTAAATATTTGGGTGTGGAGACAAAGGAAGAAACCTCATATATTCTGTTGGAGTATGTTCATGGCGAATCTATTTCATCACAATTAATGAAGAGACCTTTCAGTGAGAATAAAATAAGAACATACACGCAGCAGTTGTTGTCAGGACTACAATATTTACACCAAAAAGAAATCAAGCATGGTGACATCAAGGGCGCAAATATCCTTATTGATGCTGATGGATGCATTAAACTTGCAGATTTTGGTCTATCTAAACAGGGTGCACAACTCTGGATGGCTCCTGAAGTCCTTGACAAGGATCTGCATAATTCCAGATTCACTTATAAGTCTGATATATGGAGTGTTGGGTGCACTGTTATTGAGATGGCCACTGGAGAGGATCCTTGGAGGCGAAAGTACCACGCAGGGGACTCATTTCTCAAACATATGGACAAATCGGATTCTGTTCCTACAATCCCTTACAATCTTTCTTCTGATCTGAAACAATTTTTGAGACGATGTTTGCAAAGGGAACAGGATTTGAGGCCATCTGCATCCCAGTTGCTTCAGGATCCATTCATAACCGGGCAAAACATCCCGCAACCATCTACTGGCAGGGTACGCGGCGGCCCTTCTACCAGCGGAGGCGGCAGACATCCTCGTCCTCCTGTTGCCACCGTATGCTTCGGAGGCAGCGTTCGTCCTCCTGCATCCAGCAGAGGCGGCGTCCATCCTCCAGCTGCCAGCAGAGGCGGCGTCCATCCTCCAGCTACCAGCAGAGGCGGCGTCCGTCCTCGTCCTCCAGCTACCGGCAGAGGCGGCGTCCGTCCTCATCCTCCAGATGCCAGCAGAGGTGGCATCCATCCTCGATCTCCTACTGCTAGAGCTGCTAGCAGAGGTTTTCAACCTCATCCTACTTCTACTGCTCGGGTAGGCGGCCTCGGTTCTCATCTTGTTGCTGCACGCGGATGCTGCGTTCCTCCACATCTTCCTGCACTCAGGAGAGGCGGCCTCCATCCTCATCTTGGTGCTGTTAGGGGAGGGGGCGTCCGTCCTCATCTTCCTGCAGGCGGCCTCCATCCTCATCTTGCTGCTGTTAGGGGAGGCGGCGTCCGTCCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

439

Amino Acids

47.17

Weight (kDa)

10.09

Isoelectric Point (pI)

59.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014799)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13230 FvH4_7g13230 FvH4_7g13230 FvH4_7g13230
rosa_chinensis	RchiOBHm_Chr1g0352391
rosa_laevigata	RLG00000028334
rosa_roxburghii	Rroxscaffold_166G00440730 Rroxscaffold_4G00302910
rosa_rugosa	Rorug01G0228400 Rorug01G0228400
rosa_samantha	Rh1AG241600 Rh1AG241700 Rh1BG212900 Rh1CG225500 Rh1DG239200 Rh3BG095500
rosa_wichuraiana	Rw1G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AasI	GACNNNNNNGTC	1 cut(s)	852
AccB7I	CCANNNNNTGG	1 cut(s)	803
AccI	GTMKAC	1 cut(s)	108
AccII	CGCG	2 cut(s)	816, 1158
AclWI	GGATC	6 cut(s)	46, 519, 587, 600, 758, 771
AcoI	YGGCCR	2 cut(s)	114, 579
AcuI	CTGAAG	2 cut(s)	516, 743
AcyI	GRCGYC	6 cut(s)	918, 948, 978, 1014, 1239, 1302
AfaI	GTAC	3 cut(s)	9, 611, 813
AfiI	CCNNNNNNNGG	6 cut(s)	508, 619, 803, 1001, 1217, 1262
AgsI	TTSAA	1 cut(s)	1097
AloI	GAACNNNNNNTCC	4 cut(s)	873, 905, 1152, 1184
AluBI	AGCT	6 cut(s)	169, 184, 932, 962, 998, 1079
AluI	AGCT	6 cut(s)	169, 184, 932, 962, 998, 1079
Alw21I	GWGCWC	3 cut(s)	69, 478, 566
Alw26I	GTCTC	5 cut(s)	51, 204, 227, 301, 700
Alw44I	GTGCAC	2 cut(s)	474, 562
AlwI	GGATC	6 cut(s)	46, 519, 587, 600, 758, 771
Ama87I	CYCGRG	1 cut(s)	1119
AoxI	GGCC	8 cut(s)	101, 114, 579, 737, 820, 1129, 1201, 1264
ApaLI	GTGCAC	2 cut(s)	474, 562
ApeKI	GCWGC	7 cut(s)	343, 885, 932, 1079, 1151, 1164, 1283
AseI	ATTAAT	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	410
AspS9I	GGNCC	2 cut(s)	101, 821
AsuC2I	CCSGG	1 cut(s)	778
AsuHPI	GGTGA	1 cut(s)	407
AsuNHI	GCTAGC	1 cut(s)	1082
AvaI	CYCGRG	1 cut(s)	1119
BaeGI	GKGCMC	2 cut(s)	478, 566
BalI	TGGCCA	2 cut(s)	116, 581
BamHI	GGATCC	2 cut(s)	592, 763
Bbv12I	GWGCWC	3 cut(s)	69, 478, 566
BbvI	GCAGC	7 cut(s)	355, 897, 919, 1066, 1138, 1151, 1270
BcnI	CCSGG	1 cut(s)	778
BcoDI	GTCTC	5 cut(s)	51, 204, 227, 301, 700
BfaI	CTAG	2 cut(s)	1074, 1083
BfmI	CTRYAG	1 cut(s)	1257
Bme1390I	CCNGG	1 cut(s)	778
BmeT110I	CYCGRG	1 cut(s)	1119
BmgT120I	GGNCC	2 cut(s)	101, 821
BmiI	GGNNCC	4 cut(s)	88, 492, 594, 765
BmrFI	CCNGG	1 cut(s)	778
BmrI	ACTGGG	1 cut(s)	745
BmsI	GCATC	7 cut(s)	415, 425, 755, 911, 1024, 1059, 1151
BmtI	GCTAGC	1 cut(s)	1086
BmuI	ACTGGG	1 cut(s)	745
BplI	GAGNNNNNCTC	2 cut(s)	1188, 1220
BpmI	CTGGAG	5 cut(s)	606, 912, 942, 978, 1014
BpuMI	CCSGG	1 cut(s)	778
BsaHI	GRCGYC	6 cut(s)	918, 948, 978, 1014, 1239, 1302
BsaI	GGTCTC	1 cut(s)	301
BsaJI	CCNNGG	2 cut(s)	596, 1132
BsaXI	ACNNNNNCTCC	6 cut(s)	873, 903, 1224, 1254, 1287, 1317
Bsc4I	CCNNNNNNNGG	6 cut(s)	508, 619, 803, 1001, 1217, 1262
Bse118I	RCCGGY	1 cut(s)	1001
Bse1I	ACTGG	3 cut(s)	589, 751, 808
BseDI	CCNNGG	2 cut(s)	596, 1132
BseLI	CCNNNNNNNGG	6 cut(s)	508, 619, 803, 1001, 1217, 1262
BseMII	CTCAG	2 cut(s)	56, 1204
BseNI	ACTGG	3 cut(s)	589, 751, 808
BseSI	GKGCMC	2 cut(s)	478, 566
BseXI	GCAGC	7 cut(s)	355, 897, 919, 1066, 1138, 1151, 1270
BsgI	GTGCAG	2 cut(s)	1137, 1170
Bsh1236I	CGCG	2 cut(s)	816, 1158
BshFI	GGCC	8 cut(s)	103, 116, 581, 739, 822, 1131, 1203, 1266
BsiHKAI	GWGCWC	3 cut(s)	69, 478, 566
BsiHKCI	CYCGRG	1 cut(s)	1119
BsiSI	CCGG	3 cut(s)	90, 777, 1002
BslFI	GGGAC	2 cut(s)	74, 635
BslI	CCNNNNNNNGG	6 cut(s)	508, 619, 803, 1001, 1217, 1262
BsmAI	GTCTC	5 cut(s)	51, 204, 227, 301, 700
BsmBI	CGTCTC	1 cut(s)	700
BsmFI	GGGAC	2 cut(s)	74, 635
BsnI	GGCC	8 cut(s)	103, 116, 581, 739, 822, 1131, 1203, 1266
Bso31I	GGTCTC	1 cut(s)	301
BsoBI	CYCGRG	1 cut(s)	1119
Bsp1286I	GDGCHC	3 cut(s)	69, 478, 566
Bsp143I	GATC	8 cut(s)	38, 81, 121, 511, 592, 688, 763, 1061
BspANI	GGCC	8 cut(s)	103, 116, 581, 739, 822, 1131, 1203, 1266
BspCNI	CTCAG	2 cut(s)	55, 1203
BspFNI	CGCG	2 cut(s)	816, 1158
BspLI	GGNNCC	4 cut(s)	88, 492, 594, 765
BspMAI	CTGCAG	1 cut(s)	1261
BspOI	GCTAGC	1 cut(s)	1086
BspPI	GGATC	6 cut(s)	46, 519, 587, 600, 758, 771
BspTNI	GGTCTC	1 cut(s)	301
BsrFI	RCCGGY	1 cut(s)	1001
BsrI	ACTGG	3 cut(s)	589, 751, 808
BssAI	RCCGGY	1 cut(s)	1001
BssECI	CCNNGG	2 cut(s)	596, 1132
BssMI	GATC	8 cut(s)	38, 81, 121, 511, 592, 688, 763, 1061
BssNI	GRCGYC	6 cut(s)	918, 948, 978, 1014, 1239, 1302
BssT1I	CCWWGG	1 cut(s)	596
Bst4CI	ACNGT	2 cut(s)	568, 871
Bst6I	CTCTTC	1 cut(s)	299
BstACI	GRCGYC	6 cut(s)	918, 948, 978, 1014, 1239, 1302
BstC8I	GCNNGC	5 cut(s)	937, 1039, 1084, 1156, 1261
BstDEI	CTNAG	2 cut(s)	42, 1190
BstENI	CCTNNNNNAGG	1 cut(s)	506
BstFNI	CGCG	2 cut(s)	816, 1158
BstHHI	GCGC	1 cut(s)	410
BstKTI	GATC	8 cut(s)	41, 84, 124, 514, 595, 691, 766, 1064
BstMAI	GTCTC	5 cut(s)	51, 204, 227, 301, 700
BstMBI	GATC	8 cut(s)	38, 81, 121, 511, 592, 688, 763, 1061
BstSCI	CCNGG	1 cut(s)	776
BstSFI	CTRYAG	1 cut(s)	1257
BstSLI	GKGCMC	2 cut(s)	478, 566
BstUI	CGCG	2 cut(s)	816, 1158
BstV1I	GCAGC	7 cut(s)	355, 897, 919, 1066, 1138, 1151, 1270
BstX2I	RGATCY	4 cut(s)	38, 511, 592, 763
BstYI	RGATCY	4 cut(s)	38, 511, 592, 763
BsuRI	GGCC	8 cut(s)	103, 116, 581, 739, 822, 1131, 1203, 1266
BtsIMutI	CAGTG	3 cut(s)	322, 564, 582
Cac8I	GCNNGC	5 cut(s)	937, 1039, 1084, 1156, 1261
CfoI	GCGC	1 cut(s)	410
Cfr10I	RCCGGY	1 cut(s)	1001
Cfr13I	GGNCC	2 cut(s)	101, 821
CseI	GACGC	6 cut(s)	907, 937, 967, 1003, 1228, 1291
Csp6I	GTAC	3 cut(s)	8, 610, 812
CviAII	CATG	2 cut(s)	275, 392
CviQI	GTAC	3 cut(s)	8, 610, 812
DdeI	CTNAG	2 cut(s)	42, 1190
DpnI	GATC	8 cut(s)	40, 83, 123, 513, 594, 690, 765, 1063
DpnII	GATC	8 cut(s)	38, 81, 121, 511, 592, 688, 763, 1061
DrdI	GACNNNNNNGTC	1 cut(s)	852
DseDI	GACNNNNNNGTC	1 cut(s)	852
EaeI	YGGCCR	2 cut(s)	114, 579
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
Eco130I	CCWWGG	1 cut(s)	596
Eco31I	GGTCTC	1 cut(s)	301
Eco57I	CTGAAG	2 cut(s)	516, 743
Eco88I	CYCGRG	1 cut(s)	1119
EcoNI	CCTNNNNNAGG	1 cut(s)	506
EcoT14I	CCWWGG	1 cut(s)	596
EcoT22I	ATGCAT	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	596
Esp3I	CGTCTC	1 cut(s)	700
FaeI	CATG	2 cut(s)	278, 395
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FaqI	GGGAC	2 cut(s)	74, 635
FatI	CATG	2 cut(s)	274, 391
FauI	CCCGC	1 cut(s)	798
FauNDI	CATATG	1 cut(s)	639
FblI	GTMKAC	1 cut(s)	108
FspBI	CTAG	2 cut(s)	1074, 1083
GlaI	GCGC	1 cut(s)	409
GsuI	CTGGAG	5 cut(s)	606, 912, 942, 978, 1014
HaeIII	GGCC	8 cut(s)	103, 116, 581, 739, 822, 1131, 1203, 1266
HapII	CCGG	3 cut(s)	90, 777, 1002
HgaI	GACGC	6 cut(s)	907, 937, 967, 1003, 1228, 1291
HhaI	GCGC	1 cut(s)	410
Hin1I	GRCGYC	6 cut(s)	918, 948, 978, 1014, 1239, 1302
Hin1II	CATG	2 cut(s)	278, 395
Hin6I	GCGC	1 cut(s)	408
HinP1I	GCGC	1 cut(s)	408
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	6 cut(s)	52, 132, 281, 528, 623, 653
HpaII	CCGG	3 cut(s)	90, 777, 1002
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	3 cut(s)	109, 476, 564
Hpy188I	TCNGA	6 cut(s)	51, 544, 652, 688, 693, 881
Hpy188III	TCNNGA	8 cut(s)	129, 357, 484, 494, 525, 761, 1031, 1192
Hpy8I	GTNNAC	3 cut(s)	109, 476, 564
HpyAV	CCTTC	1 cut(s)	834
HpyCH4III	ACNGT	2 cut(s)	568, 871
HpyF3I	CTNAG	2 cut(s)	42, 1190
Hsp92I	GRCGYC	6 cut(s)	918, 948, 978, 1014, 1239, 1302
Hsp92II	CATG	2 cut(s)	278, 395
HspAI	GCGC	1 cut(s)	408
Kzo9I	GATC	8 cut(s)	38, 81, 121, 511, 592, 688, 763, 1061
LmnI	GCTCC	2 cut(s)	166, 496
Lsp1109I	GCAGC	7 cut(s)	355, 897, 919, 1066, 1138, 1151, 1270
LweI	GCATC	7 cut(s)	415, 425, 755, 911, 1024, 1059, 1151
MaeI	CTAG	2 cut(s)	1074, 1083
MaeIII	GTNAC	2 cut(s)	31, 395
MalI	GATC	8 cut(s)	40, 83, 123, 513, 594, 690, 765, 1063
MboI	GATC	8 cut(s)	38, 81, 121, 511, 592, 688, 763, 1061
MboII	GAAGA	5 cut(s)	254, 316, 675, 1172, 1244
MflI	RGATCY	4 cut(s)	38, 511, 592, 763
MhlI	GDGCHC	3 cut(s)	69, 478, 566
MlsI	TGGCCA	2 cut(s)	116, 581
MluCI	AATT	5 cut(s)	194, 296, 520, 698, 1312
MluNI	TGGCCA	2 cut(s)	116, 581
MlyI	GAGTC	1 cut(s)	617
MmeI	TCCRAC	1 cut(s)	243
Mox20I	TGGCCA	2 cut(s)	116, 581
Mph1103I	ATGCAT	1 cut(s)	440
MscI	TGGCCA	2 cut(s)	116, 581
MseI	TTAA	3 cut(s)	216, 299, 441
MslI	CAYNNNNRTG	2 cut(s)	1159, 1218
Msp20I	TGGCCA	2 cut(s)	116, 581
MspA1I	CMGCKG	2 cut(s)	834, 932
MspI	CCGG	3 cut(s)	90, 777, 1002
MspR9I	CCNGG	1 cut(s)	778
MvnI	CGCG	2 cut(s)	816, 1158
NciI	CCSGG	1 cut(s)	778
NdeI	CATATG	1 cut(s)	639
NdeII	GATC	8 cut(s)	38, 81, 121, 511, 592, 688, 763, 1061
NheI	GCTAGC	1 cut(s)	1082
NlaIII	CATG	2 cut(s)	278, 395
NlaIV	GGNNCC	4 cut(s)	88, 492, 594, 765
NmuCI	GTSAC	1 cut(s)	395
NsiI	ATGCAT	1 cut(s)	440
PcsI	WCGNNNNNNNCGW	1 cut(s)	885
PfeI	GAWTC	5 cut(s)	52, 132, 281, 528, 653
PflMI	CCANNNNNTGG	1 cut(s)	803
PleI	GAGTC	1 cut(s)	617
PpsI	GAGTC	1 cut(s)	617
PshBI	ATTAAT	1 cut(s)	299
PsiI	TTATAA	1 cut(s)	537
PspN4I	GGNNCC	4 cut(s)	88, 492, 594, 765
PspPI	GGNCC	2 cut(s)	101, 821
PstI	CTGCAG	1 cut(s)	1261
PsuI	RGATCY	4 cut(s)	38, 511, 592, 763
PvuII	CAGCTG	1 cut(s)	932
RsaI	GTAC	3 cut(s)	9, 611, 813
RsaNI	GTAC	3 cut(s)	8, 610, 812
RseI	CAYNNNNRTG	2 cut(s)	1159, 1218
SaqAI	TTAA	3 cut(s)	216, 299, 441
Sau3AI	GATC	8 cut(s)	38, 81, 121, 511, 592, 688, 763, 1061
Sau96I	GGNCC	2 cut(s)	101, 821
SbfI	CCTGCAGG	1 cut(s)	1261
SchI	GAGTC	1 cut(s)	617
ScrFI	CCNGG	1 cut(s)	778
SdaI	CCTGCAGG	1 cut(s)	1261
SduI	GDGCHC	3 cut(s)	69, 478, 566
SfaNI	GCATC	7 cut(s)	415, 425, 755, 911, 1024, 1059, 1151
SfcI	CTRYAG	1 cut(s)	1257
SmiMI	CAYNNNNRTG	2 cut(s)	1159, 1218
Sse8387I	CCTGCAGG	1 cut(s)	1261
Sse9I	AATT	5 cut(s)	194, 296, 520, 698, 1312
SspI	AATATT	2 cut(s)	221, 368
SspMI	CTAG	2 cut(s)	1074, 1083
StyD4I	CCNGG	1 cut(s)	776
StyI	CCWWGG	1 cut(s)	596
TaaI	ACNGT	2 cut(s)	568, 871
TaqI	TCGA	2 cut(s)	55, 1060
TasI	AATT	5 cut(s)	194, 296, 520, 698, 1312
TfiI	GAWTC	5 cut(s)	52, 132, 281, 528, 653
Tru1I	TTAA	3 cut(s)	216, 299, 441
Tru9I	TTAA	3 cut(s)	216, 299, 441
TscAI	CASTG	3 cut(s)	322, 571, 589
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	7 cut(s)	343, 885, 932, 1079, 1151, 1164, 1283
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	5 cut(s)	189, 263, 279, 317, 760
TspGWI	ACGGA	4 cut(s)	971, 1007, 1232, 1295
TspRI	CASTG	3 cut(s)	322, 571, 589
Van91I	CCANNNNNTGG	1 cut(s)	803
VneI	GTGCAC	2 cut(s)	474, 562
VspI	ATTAAT	1 cut(s)	299
XagI	CCTNNNNNAGG	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1214
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	2 cut(s)	1074, 1083
Zsp2I	ATGCAT	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.