Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0014799

Physical Location & Seq

Genomic Coordinates Reverse (-)

47762040 .. 47816438

Gene Structure 54399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG225500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGAAGGTCAAAGAATTAAAGGAGAGAGCTATGAGCGTGCTTAGTCCATGCTGCCTGGTTGAGTCACATGAGCTTTCGCATGATAGTAACCAAACTACACAAGCCTCTGAAAGTGGTCCTCTACCATTTGTCTCTCTTTTGGAGTTTGTGAGTGGAATTTATCGGAAGGAGCCAGAGCAATTGTCTGGCAATGACGCCTTGTGGACATTTGCAAAATTTGCTGGAGAGGACGATTCAAATTTTCAAACTCTTATGGCTCTCTTGAATATGCTGAGTACCTTCGCTCACATCAGGGAGCTTGATGAAGTGAAGCTTCTACAAAAGTTGTCTCATAAGCACATTGTCAAATATTTGGGTGCAGATACAAAGGAAGAAACCTCATATATTCTGTTGGAATATGTTCCGGGTGGATCTATTTCAGCACATTTGATGAAGGGAGCTTTCGATGAGGATAAAATAAGAACGTACATGCAGCAGCTGTTGTTGGGACTACAATATTTACACCAAAAAGAAATCACGCATGGTGACATTAAGGGAGCGAATATCCTTATTGATGCTGATGGATGCATTAAACTTGCAGATTTTGGTCTGTCTAAACAGGGTGCACAACTCTGGATGACTCCTGAAGTCCTTCTCCAGAAGGATCTGCATAATTGCAGATTTACTGATAAGCCTGATATATGGAGTGTGGGGTGCACTGTTATTGAGATGGCCACTGGAGATCCTTGGACTCTTGGAGGGGAAATTACCACGCAGGGGCCTCTTTTCTCAAACATATGGAGAAATCAGATTCTGTTCCTCCAATTAATCCCCGATAATCTTTCTTCTTATGGGAAACAATTTTTGAGACGATGTCTGCAAAGGGAACCAAATTTGAGGGCATCTGCATCCCAGTTGCTTGAGGATCCATTCATATCCAGGAAAAACTTCAGCCACCCATCTGGAGCTGGTACAGCTGTTGGAGCTGTTGCTGCCCCCGTCATCCACCAGCAACACGTAGTTACCCCAGCTGCTCCCAAGCAACGCATTGTTACCCCGCTGCTCCCTCCCAAGCAACACATGGTTACCCCTGCTGCTCCCAAGCAGCGCATTGTTACCCCATCCACACAACGCGTTGTTCACTCGATCAGTTGCTTCACGTCCTGCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

383

Amino Acids

42.59

Weight (kDa)

6.7

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	100 - 305	3.4e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	100 - 301	4.7e-29	Protein tyrosine and serine/threonine kinase
ABC1	PF03109	126 - 200	6.9e-06	ABC1 atypical kinase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014799)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13230 FvH4_7g13230 FvH4_7g13230 FvH4_7g13230
rosa_chinensis	RchiOBHm_Chr1g0352391
rosa_laevigata	RLG00000028334
rosa_roxburghii	Rroxscaffold_166G00440730 Rroxscaffold_4G00302910
rosa_rugosa	Rorug01G0228400 Rorug01G0228400
rosa_samantha	Rh1AG241600 Rh1AG241700 Rh1BG212900 Rh1CG225500 Rh1DG239200 Rh3BG095500
rosa_wichuraiana	Rw1G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1113
AciI	CCGC	1 cut(s)	1037
AclWI	GGATC	5 cut(s)	418, 651, 716, 899, 912
AcoI	YGGCCR	1 cut(s)	711
AcsI	RAATTY	4 cut(s)	156, 215, 238, 871
AcuI	CTGAAG	2 cut(s)	645, 913
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	3 cut(s)	277, 467, 952
AfiI	CCNNNNNNNGG	1 cut(s)	756
AflIII	ACRYGT	2 cut(s)	994, 1111
AgsI	TTSAA	3 cut(s)	237, 245, 265
AjiI	CACGTC	1 cut(s)	1140
AjnI	CCWGG	2 cut(s)	54, 917
Alw21I	GWGCWC	2 cut(s)	607, 698
Alw26I	GTCTC	3 cut(s)	136, 333, 841
Alw44I	GTGCAC	2 cut(s)	603, 694
AlwI	GGATC	5 cut(s)	418, 651, 716, 899, 912
AlwNI	CAGNNNCTG	2 cut(s)	478, 793
AoxI	GGCC	2 cut(s)	711, 758
ApaLI	GTGCAC	2 cut(s)	603, 694
ApeKI	GCWGC	9 cut(s)	51, 472, 475, 971, 1010, 1039, 1073, 1084, 1146
ApoI	RAATTY	4 cut(s)	156, 215, 238, 871
AseI	ATTAAT	1 cut(s)	806
Asp700I	GAANNNNTTC	3 cut(s)	399, 630, 926
AspLEI	GCGC	1 cut(s)	1089
AspS9I	GGNCC	2 cut(s)	116, 758
AsuC2I	CCSGG	1 cut(s)	405
AsuHPI	GGTGA	1 cut(s)	536
AvaII	GGWCC	1 cut(s)	116
BaeGI	GKGCMC	2 cut(s)	607, 698
BaeI	ACNNNNGTAYC	2 cut(s)	942, 975
BalI	TGGCCA	1 cut(s)	713
BamHI	GGATCC	1 cut(s)	904
Bbv12I	GWGCWC	2 cut(s)	607, 698
BbvI	GCAGC	9 cut(s)	38, 484, 487, 958, 997, 1026, 1060, 1096, 1133
BccI	CCATC	4 cut(s)	554, 703, 946, 1108
BciT130I	CCWGG	2 cut(s)	56, 919
BcnI	CCSGG	1 cut(s)	405
BcoDI	GTCTC	3 cut(s)	136, 333, 841
BfaI	CTAG	1 cut(s)	1150
BisI	GCNGC	9 cut(s)	52, 473, 476, 972, 1011, 1040, 1074, 1085, 1147
BlsI	GCNGC	9 cut(s)	53, 474, 477, 973, 1012, 1041, 1075, 1086, 1148
Bme1390I	CCNGG	3 cut(s)	56, 405, 919
Bme18I	GGWCC	1 cut(s)	116
BmgBI	CACGTC	1 cut(s)	1140
BmgT120I	GGNCC	2 cut(s)	116, 758
BmiI	GGNNCC	4 cut(s)	171, 759, 867, 906
BmrFI	CCNGG	3 cut(s)	56, 405, 919
BmrI	ACTGGG	1 cut(s)	886
BmsI	GCATC	4 cut(s)	544, 554, 890, 896
BmuI	ACTGGG	1 cut(s)	886
BpmI	CTGGAG	4 cut(s)	243, 620, 738, 963
BpuEI	CTTGAG	1 cut(s)	920
BpuMI	CCSGG	1 cut(s)	405
BsaAI	YACGTR	1 cut(s)	997
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	725
Bsc4I	CCNNNNNNNGG	1 cut(s)	756
Bse1I	ACTGG	2 cut(s)	721, 892
Bse3DI	GCAATG	1 cut(s)	196
BseBI	CCWGG	2 cut(s)	56, 919
BseDI	CCNNGG	1 cut(s)	725
BseGI	GGATG	5 cut(s)	569, 621, 887, 981, 1100
BseLI	CCNNNNNNNGG	1 cut(s)	756
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	263
BseNI	ACTGG	2 cut(s)	721, 892
BseSI	GKGCMC	2 cut(s)	607, 698
BseXI	GCAGC	9 cut(s)	38, 484, 487, 958, 997, 1026, 1060, 1096, 1133
BseYI	CCCAGC	1 cut(s)	1006
BsgI	GTGCAG	1 cut(s)	378
Bsh1236I	CGCG	1 cut(s)	1113
BshFI	GGCC	2 cut(s)	713, 760
BsiHKAI	GWGCWC	2 cut(s)	607, 698
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	501
BslI	CCNNNNNNNGG	1 cut(s)	756
BsmAI	GTCTC	3 cut(s)	136, 333, 841
BsmBI	CGTCTC	1 cut(s)	841
BsmFI	GGGAC	1 cut(s)	501
BsnI	GGCC	2 cut(s)	713, 760
Bsp1286I	GDGCHC	2 cut(s)	607, 698
Bsp143I	GATC	5 cut(s)	410, 643, 721, 904, 1125
BspACI	CCGC	1 cut(s)	1037
BspANI	GGCC	2 cut(s)	713, 760
BspCNI	CTCAG	1 cut(s)	264
BspFNI	CGCG	1 cut(s)	1113
BspLI	GGNNCC	4 cut(s)	171, 759, 867, 906
BspPI	GGATC	5 cut(s)	418, 651, 716, 899, 912
BsrDI	GCAATG	1 cut(s)	196
BsrI	ACTGG	2 cut(s)	721, 892
BssECI	CCNNGG	1 cut(s)	725
BssMI	GATC	5 cut(s)	410, 643, 721, 904, 1125
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	725
Bst2UI	CCWGG	2 cut(s)	56, 919
Bst4CI	ACNGT	1 cut(s)	700
BstACI	GRCGYC	1 cut(s)	195
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstBAI	YACGTR	1 cut(s)	997
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	2 cut(s)	41, 272
BstEII	GGTNACC	1 cut(s)	1063
BstF5I	GGATG	5 cut(s)	569, 621, 887, 981, 1100
BstFNI	CGCG	1 cut(s)	1113
BstHHI	GCGC	1 cut(s)	1089
BstKTI	GATC	5 cut(s)	413, 646, 724, 907, 1128
BstMAI	GTCTC	3 cut(s)	136, 333, 841
BstMBI	GATC	5 cut(s)	410, 643, 721, 904, 1125
BstMWI	GCNNNNNNNGC	4 cut(s)	218, 953, 962, 971
BstNI	CCWGG	2 cut(s)	56, 919
BstNSI	RCATGY	1 cut(s)	472
BstPI	GGTNACC	1 cut(s)	1063
BstSCI	CCNGG	3 cut(s)	54, 403, 917
BstSLI	GKGCMC	2 cut(s)	607, 698
BstUI	CGCG	1 cut(s)	1113
BstV1I	GCAGC	9 cut(s)	38, 484, 487, 958, 997, 1026, 1060, 1096, 1133
BstX2I	RGATCY	4 cut(s)	410, 643, 721, 904
BstXI	CCANNNNNNTGG	1 cut(s)	941
BstYI	RGATCY	4 cut(s)	410, 643, 721, 904
BsuRI	GGCC	2 cut(s)	713, 760
BtrI	CACGTC	1 cut(s)	1140
BtsCI	GGATG	5 cut(s)	569, 621, 887, 981, 1100
BtsIMutI	CAGTG	2 cut(s)	696, 714
Cac8I	GCNNGC	1 cut(s)	38
CaiI	CAGNNNCTG	2 cut(s)	478, 793
CfoI	GCGC	1 cut(s)	1089
Cfr13I	GGNCC	2 cut(s)	116, 758
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	3 cut(s)	276, 466, 951
CviAII	CATG	6 cut(s)	48, 68, 80, 469, 521, 1060
CviQI	GTAC	3 cut(s)	276, 466, 951
DdeI	CTNAG	2 cut(s)	41, 272
DpnI	GATC	5 cut(s)	412, 645, 723, 906, 1127
DpnII	GATC	5 cut(s)	410, 643, 721, 904, 1125
EaeI	YGGCCR	1 cut(s)	711
Eco130I	CCWWGG	1 cut(s)	725
Eco47I	GGWCC	1 cut(s)	116
Eco57I	CTGAAG	2 cut(s)	645, 913
Eco91I	GGTNACC	1 cut(s)	1063
EcoO109I	RGGNCCY	1 cut(s)	758
EcoO65I	GGTNACC	1 cut(s)	1063
EcoRII	CCWGG	2 cut(s)	54, 917
EcoT14I	CCWWGG	1 cut(s)	725
EcoT22I	ATGCAT	1 cut(s)	569
ErhI	CCWWGG	1 cut(s)	725
Esp3I	CGTCTC	1 cut(s)	841
FaeI	CATG	6 cut(s)	51, 71, 83, 472, 524, 1063
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
FaqI	GGGAC	1 cut(s)	501
FatI	CATG	6 cut(s)	47, 67, 79, 468, 520, 1059
FauI	CCCGC	1 cut(s)	1044
FauNDI	CATATG	1 cut(s)	776
Fnu4HI	GCNGC	9 cut(s)	52, 473, 476, 972, 1011, 1040, 1074, 1085, 1147
FokI	GGATG	5 cut(s)	576, 628, 874, 968, 1087
Fsp4HI	GCNGC	9 cut(s)	52, 473, 476, 972, 1011, 1040, 1074, 1085, 1147
FspBI	CTAG	1 cut(s)	1150
GlaI	GCGC	1 cut(s)	1088
GluI	GCNGC	9 cut(s)	52, 473, 476, 972, 1011, 1040, 1074, 1085, 1147
GsaI	CCCAGC	1 cut(s)	1010
GsuI	CTGGAG	4 cut(s)	243, 620, 738, 963
HaeIII	GGCC	2 cut(s)	713, 760
HapII	CCGG	1 cut(s)	404
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	1089
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	6 cut(s)	51, 71, 83, 472, 524, 1063
Hin6I	GCGC	1 cut(s)	1087
HinP1I	GCGC	1 cut(s)	1087
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	5 cut(s)	62, 233, 619, 730, 790
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	4 cut(s)	204, 605, 696, 1120
Hpy188I	TCNGA	3 cut(s)	109, 165, 789
Hpy188III	TCNNGA	5 cut(s)	262, 613, 623, 637, 942
Hpy8I	GTNNAC	4 cut(s)	204, 605, 696, 1120
HpyAV	CCTTC	5 cut(s)	160, 289, 427, 634, 641
HpyCH4III	ACNGT	1 cut(s)	700
HpyCH4IV	ACGT	3 cut(s)	464, 996, 1139
HpyF10VI	GCNNNNNNNGC	4 cut(s)	218, 953, 962, 971
HpyF3I	CTNAG	2 cut(s)	41, 272
HpySE526I	ACGT	3 cut(s)	464, 996, 1139
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	6 cut(s)	51, 71, 83, 472, 524, 1063
HspAI	GCGC	1 cut(s)	1087
Kzo9I	GATC	5 cut(s)	410, 643, 721, 904, 1125
LmnI	GCTCC	9 cut(s)	169, 295, 437, 536, 944, 962, 1018, 1047, 1081
Lsp1109I	GCAGC	9 cut(s)	38, 484, 487, 958, 997, 1026, 1060, 1096, 1133
LweI	GCATC	4 cut(s)	544, 554, 890, 896
MaeI	CTAG	1 cut(s)	1150
MaeII	ACGT	3 cut(s)	464, 996, 1139
MaeIII	GTNAC	7 cut(s)	63, 86, 524, 1000, 1030, 1063, 1093
MalI	GATC	5 cut(s)	412, 645, 723, 906, 1127
MboI	GATC	5 cut(s)	410, 643, 721, 904, 1125
MboII	GAAGA	2 cut(s)	383, 816
MfeI	CAATTG	1 cut(s)	179
MflI	RGATCY	4 cut(s)	410, 643, 721, 904
MhlI	GDGCHC	2 cut(s)	607, 698
MlsI	TGGCCA	1 cut(s)	713
MluI	ACGCGT	1 cut(s)	1111
MluNI	TGGCCA	1 cut(s)	713
MlyI	GAGTC	3 cut(s)	71, 613, 724
MmeI	TCCRAC	2 cut(s)	372, 940
Mox20I	TGGCCA	1 cut(s)	713
Mph1103I	ATGCAT	1 cut(s)	569
MroXI	GAANNNNTTC	3 cut(s)	399, 630, 926
MscI	TGGCCA	1 cut(s)	713
MseI	TTAA	4 cut(s)	17, 531, 570, 806
Msp20I	TGGCCA	1 cut(s)	713
MspA1I	CMGCKG	4 cut(s)	478, 956, 1010, 1039
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	3 cut(s)	56, 405, 919
MunI	CAATTG	1 cut(s)	179
MvaI	CCWGG	2 cut(s)	56, 919
MvnI	CGCG	1 cut(s)	1113
MwoI	GCNNNNNNNGC	4 cut(s)	218, 953, 962, 971
NciI	CCSGG	1 cut(s)	405
NdeI	CATATG	1 cut(s)	776
NdeII	GATC	5 cut(s)	410, 643, 721, 904, 1125
NlaIII	CATG	6 cut(s)	51, 71, 83, 472, 524, 1063
NlaIV	GGNNCC	4 cut(s)	171, 759, 867, 906
NmuCI	GTSAC	2 cut(s)	63, 524
NsiI	ATGCAT	1 cut(s)	569
NspI	RCATGY	1 cut(s)	472
PdmI	GAANNNNTTC	3 cut(s)	399, 630, 926
PfeI	GAWTC	2 cut(s)	233, 790
PflFI	GACNNNGTC	1 cut(s)	852
PfoI	TCCNGGA	1 cut(s)	917
PkrI	GCNGC	9 cut(s)	53, 474, 477, 973, 1012, 1041, 1075, 1086, 1148
PleI	GAGTC	3 cut(s)	70, 613, 724
PpsI	GAGTC	3 cut(s)	70, 613, 724
Ppu21I	YACGTR	1 cut(s)	997
PshBI	ATTAAT	1 cut(s)	806
Psp6I	CCWGG	2 cut(s)	54, 917
PspEI	GGTNACC	1 cut(s)	1063
PspFI	CCCAGC	1 cut(s)	1006
PspGI	CCWGG	2 cut(s)	54, 917
PspN4I	GGNNCC	4 cut(s)	171, 759, 867, 906
PspPI	GGNCC	2 cut(s)	116, 758
PstNI	CAGNNNCTG	2 cut(s)	478, 793
PsuI	RGATCY	4 cut(s)	410, 643, 721, 904
PsyI	GACNNNGTC	1 cut(s)	852
PvuII	CAGCTG	3 cut(s)	478, 956, 1010
RsaI	GTAC	3 cut(s)	277, 467, 952
RsaNI	GTAC	3 cut(s)	276, 466, 951
SaqAI	TTAA	4 cut(s)	17, 531, 570, 806
SatI	GCNGC	9 cut(s)	52, 473, 476, 972, 1011, 1040, 1074, 1085, 1147
Sau3AI	GATC	5 cut(s)	410, 643, 721, 904, 1125
Sau96I	GGNCC	2 cut(s)	116, 758
SchI	GAGTC	3 cut(s)	71, 613, 724
ScrFI	CCNGG	3 cut(s)	56, 405, 919
SduI	GDGCHC	2 cut(s)	607, 698
SfaNI	GCATC	4 cut(s)	544, 554, 890, 896
SinI	GGWCC	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	899
SmoI	CTYRAG	1 cut(s)	899
SsiI	CCGC	1 cut(s)	1037
SspI	AATATT	2 cut(s)	350, 497
SspMI	CTAG	1 cut(s)	1150
StyD4I	CCNGG	3 cut(s)	54, 403, 917
StyI	CCWWGG	1 cut(s)	725
TaaI	ACNGT	1 cut(s)	700
TaiI	ACGT	3 cut(s)	467, 999, 1142
TaqI	TCGA	2 cut(s)	444, 1124
TfiI	GAWTC	2 cut(s)	233, 790
Tru1I	TTAA	4 cut(s)	17, 531, 570, 806
Tru9I	TTAA	4 cut(s)	17, 531, 570, 806
TscAI	CASTG	2 cut(s)	703, 721
TseFI	GTSAC	2 cut(s)	63, 524
TseI	GCWGC	9 cut(s)	51, 472, 475, 971, 1010, 1039, 1073, 1084, 1146
Tsp45I	GTSAC	2 cut(s)	63, 524
TspDTI	ATGAA	4 cut(s)	17, 318, 446, 901
TspRI	CASTG	2 cut(s)	703, 721
Tth111I	GACNNNGTC	1 cut(s)	852
VneI	GTGCAC	2 cut(s)	603, 694
VpaK11BI	GGWCC	1 cut(s)	116
VspI	ATTAAT	1 cut(s)	806
XapI	RAATTY	4 cut(s)	156, 215, 238, 871
XceI	RCATGY	1 cut(s)	472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1057
XmnI	GAANNNNTTC	3 cut(s)	399, 630, 926
XspI	CTAG	1 cut(s)	1150
Zsp2I	ATGCAT	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.