Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0014799

Physical Location & Seq

Genomic Coordinates Reverse (-)

44702891 .. 44707215

Gene Structure 4325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G020930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGAGAAATCAGATTCTGTTCCTCCAATCCCCGACAAGCTTTCTTCTTATGGGAAACAATTTTTGAGACGATGTCTGCAAAGGGAACCAAATTTGAGGGCATCTGCATCCCAGTTGCTTCAGGATCCATTCATAACCAGGAAAAACTTCAGGCACCCGTCTGGAGCTGGTACAGTTGTTGGAGCTGTTGCTGCCGCCATCATTCACCAGCAACACGTAGTTACCCCAGCTGCTCCCAAGCAACGCATTGTTACCCCAGCTGCTCCCAAGCAACGCATTGTTATCCCCGCTGCTCCCAAGCAACGCTTGTTATTCCCGCTGCTCCCAAGCAACGGCTTGTTATCCCGCTGCTCCCAAGCAACTCGTTGTTATCCCCGCTGCTGCTCCCAAGCAAGGATTGTTACCCCGCTGCTCCCTCCCAAGCAACACATGGTTACCCCTGCTGCTCCCAAGCAGTGCATTGTTACCCCATCCACACAACGCATTGTTCACTCAGTTGCTTCACGTCCTGCTGCTAGTCAAGCTACCCAACCTCCAGTCCACTCCAGTTCTCGTTCACATTTGAGTTCCAATTCCGGTGTGAATAACAGTTCATCTGTGAGCCTGAACTCCAGTTCCCATTTGAGTTCCGGTACACATGTAAGTTCTAGTTCACTGCTGAGTAACAGTTCACGCATGAGTAACAACTCCCGTTTGAGTACCTGGTCGGGTCCCAATGCAACATCCATATCTGGTTCCAAATCCAGATCTAGTCCCTCGCAATATGTAATGAAACACAATATGTTTTCCAAAGCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

266

Amino Acids

28.45

Weight (kDa)

11.49

Isoelectric Point (pI)

59.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014799)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13230 FvH4_7g13230 FvH4_7g13230 FvH4_7g13230
rosa_chinensis	RchiOBHm_Chr1g0352391
rosa_laevigata	RLG00000028334
rosa_roxburghii	Rroxscaffold_166G00440730 Rroxscaffold_4G00302910
rosa_rugosa	Rorug01G0228400 Rorug01G0228400
rosa_samantha	Rh1AG241600 Rh1AG241700 Rh1BG212900 Rh1CG225500 Rh1DG239200 Rh3BG095500
rosa_wichuraiana	Rw1G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	153
AciI	CCGC	6 cut(s)	195, 288, 317, 346, 376, 407
AclWI	GGATC	2 cut(s)	119, 132
AcsI	RAATTY	1 cut(s)	91
AcuI	CTGAAG	2 cut(s)	104, 133
AfaI	GTAC	3 cut(s)	172, 634, 700
AfiI	CCNNNNNNNGG	2 cut(s)	332, 393
AflIII	ACRYGT	2 cut(s)	214, 637
AjiI	CACGTC	1 cut(s)	506
AjnI	CCWGG	2 cut(s)	137, 701
AloI	GAACNNNNNNTCC	2 cut(s)	599, 631
AluBI	AGCT	6 cut(s)	40, 167, 185, 230, 260, 524
AluI	AGCT	6 cut(s)	40, 167, 185, 230, 260, 524
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	2 cut(s)	119, 132
AlwNI	CAGNNNCTG	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	91
Asp700I	GAANNNNTTC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	710
AsuHPI	GGTGA	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	710
BaeI	ACNNNNGTAYC	4 cut(s)	162, 195, 624, 657
BamHI	GGATCC	1 cut(s)	124
BanI	GGYRCC	1 cut(s)	153
BccI	CCATC	2 cut(s)	206, 478
BceAI	ACGGC	1 cut(s)	349
BciT130I	CCWGG	2 cut(s)	139, 703
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	3 cut(s)	516, 648, 750
BglII	AGATCT	1 cut(s)	746
Bme1390I	CCNGG	2 cut(s)	139, 703
Bme18I	GGWCC	1 cut(s)	710
BmgBI	CACGTC	1 cut(s)	506
BmgT120I	GGNCC	1 cut(s)	710
BmiI	GGNNCC	6 cut(s)	87, 126, 155, 711, 712, 736
BmrFI	CCNGG	2 cut(s)	139, 703
BmrI	ACTGGG	1 cut(s)	106
BmsI	GCATC	2 cut(s)	110, 116
BmuI	ACTGGG	1 cut(s)	106
BpmI	CTGGAG	4 cut(s)	183, 519, 529, 595
BsaAI	YACGTR	1 cut(s)	217
BsaWI	WCCGGW	2 cut(s)	575, 629
BsaXI	ACNNNNNCTCC	2 cut(s)	517, 547
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 393
Bse1I	ACTGG	4 cut(s)	112, 536, 546, 612
BseBI	CCWGG	2 cut(s)	139, 703
BseGI	GGATG	3 cut(s)	107, 470, 722
BseLI	CCNNNNNNNGG	2 cut(s)	332, 393
BseMII	CTCAG	2 cut(s)	507, 650
BseNI	ACTGG	4 cut(s)	112, 536, 546, 612
BseYI	CCCAGC	2 cut(s)	226, 256
BshNI	GGYRCC	1 cut(s)	153
BsiSI	CCGG	2 cut(s)	576, 630
BslFI	GGGAC	2 cut(s)	696, 738
BslI	CCNNNNNNNGG	2 cut(s)	332, 393
BsmAI	GTCTC	1 cut(s)	61
BsmBI	CGTCTC	1 cut(s)	61
BsmFI	GGGAC	2 cut(s)	696, 738
Bsp143I	GATC	2 cut(s)	124, 746
BspACI	CCGC	6 cut(s)	195, 288, 317, 346, 376, 407
BspCNI	CTCAG	2 cut(s)	506, 651
BspLI	GGNNCC	6 cut(s)	87, 126, 155, 711, 712, 736
BspPI	GGATC	2 cut(s)	119, 132
BspT107I	GGYRCC	1 cut(s)	153
BsrI	ACTGG	4 cut(s)	112, 536, 546, 612
BssMI	GATC	2 cut(s)	124, 746
Bst2UI	CCWGG	2 cut(s)	139, 703
Bst4CI	ACNGT	3 cut(s)	175, 590, 668
BstBAI	YACGTR	1 cut(s)	217
BstDEI	CTNAG	2 cut(s)	493, 659
BstEII	GGTNACC	1 cut(s)	433
BstF5I	GGATG	3 cut(s)	107, 470, 722
BstKTI	GATC	2 cut(s)	127, 749
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	2 cut(s)	124, 746
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 521
BstNI	CCWGG	2 cut(s)	139, 703
BstNSI	RCATGY	1 cut(s)	641
BstPI	GGTNACC	1 cut(s)	433
BstSCI	CCNGG	2 cut(s)	137, 701
BstX2I	RGATCY	2 cut(s)	124, 746
BstYI	RGATCY	2 cut(s)	124, 746
BtrI	CACGTC	1 cut(s)	506
BtsCI	GGATG	3 cut(s)	107, 470, 722
BtsI	GCAGTG	2 cut(s)	461, 653
BtsIMutI	CAGTG	2 cut(s)	461, 653
CaiI	CAGNNNCTG	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	710
CsiI	ACCWGGT	1 cut(s)	701
Csp6I	GTAC	3 cut(s)	171, 633, 699
CviAII	CATG	3 cut(s)	430, 638, 676
CviJI	RGCY	8 cut(s)	40, 167, 185, 230, 260, 336, 524, 603
CviKI_1	RGCY	8 cut(s)	40, 167, 185, 230, 260, 336, 524, 603
CviQI	GTAC	3 cut(s)	171, 633, 699
DdeI	CTNAG	2 cut(s)	493, 659
DpnI	GATC	2 cut(s)	126, 748
DpnII	GATC	2 cut(s)	124, 746
Eco47I	GGWCC	1 cut(s)	710
Eco57I	CTGAAG	2 cut(s)	104, 133
Eco91I	GGTNACC	1 cut(s)	433
EcoO109I	RGGNCCY	1 cut(s)	710
EcoO65I	GGTNACC	1 cut(s)	433
EcoRII	CCWGG	2 cut(s)	137, 701
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	3 cut(s)	433, 641, 679
FaiI	YATR	8 cut(s)	51, 134, 431, 639, 677, 728, 765, 782
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FaqI	GGGAC	2 cut(s)	696, 738
FatI	CATG	3 cut(s)	429, 637, 675
FauI	CCCGC	5 cut(s)	295, 324, 353, 383, 414
FokI	GGATG	3 cut(s)	94, 457, 709
FspBI	CTAG	3 cut(s)	516, 648, 750
GsaI	CCCAGC	2 cut(s)	230, 260
GsuI	CTGGAG	4 cut(s)	183, 519, 529, 595
HapII	CCGG	2 cut(s)	576, 630
Hin1II	CATG	3 cut(s)	433, 641, 679
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	2 cut(s)	576, 630
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	6 cut(s)	490, 541, 557, 635, 653, 671
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	4 cut(s)	122, 162, 744, 798
Hpy8I	GTNNAC	6 cut(s)	490, 541, 557, 635, 653, 671
HpyCH4III	ACNGT	3 cut(s)	175, 590, 668
HpyCH4IV	ACGT	2 cut(s)	216, 505
HpyCH4V	TGCA	4 cut(s)	79, 107, 459, 719
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 521
HpyF3I	CTNAG	2 cut(s)	493, 659
HpySE526I	ACGT	2 cut(s)	216, 505
Hsp92II	CATG	3 cut(s)	433, 641, 679
KflI	GGGWCCC	1 cut(s)	710
Kzo9I	GATC	2 cut(s)	124, 746
LweI	GCATC	2 cut(s)	110, 116
MabI	ACCWGGT	1 cut(s)	701
MaeI	CTAG	3 cut(s)	516, 648, 750
MaeII	ACGT	2 cut(s)	216, 505
MaeIII	GTNAC	7 cut(s)	220, 250, 400, 433, 463, 662, 680
MalI	GATC	2 cut(s)	126, 748
MboI	GATC	2 cut(s)	124, 746
MboII	GAAGA	1 cut(s)	36
MflI	RGATCY	2 cut(s)	124, 746
MluCI	AATT	3 cut(s)	59, 91, 571
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	5 cut(s)	33, 90, 426, 543, 766
MroXI	GAANNNNTTC	1 cut(s)	146
MspA1I	CMGCKG	7 cut(s)	230, 260, 290, 319, 348, 378, 409
MspI	CCGG	2 cut(s)	576, 630
MspR9I	CCNGG	2 cut(s)	139, 703
MvaI	CCWGG	2 cut(s)	139, 703
MwoI	GCNNNNNNNGC	2 cut(s)	191, 521
NdeII	GATC	2 cut(s)	124, 746
NlaIII	CATG	3 cut(s)	433, 641, 679
NlaIV	GGNNCC	6 cut(s)	87, 126, 155, 711, 712, 736
NspI	RCATGY	1 cut(s)	641
PciI	ACATGT	1 cut(s)	637
PdmI	GAANNNNTTC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	14
PflFI	GACNNNGTC	1 cut(s)	72
Ppu21I	YACGTR	1 cut(s)	217
PpuMI	RGGWCCY	1 cut(s)	710
PscI	ACATGT	1 cut(s)	637
Psp5II	RGGWCCY	1 cut(s)	710
Psp6I	CCWGG	2 cut(s)	137, 701
PspEI	GGTNACC	1 cut(s)	433
PspFI	CCCAGC	2 cut(s)	226, 256
PspGI	CCWGG	2 cut(s)	137, 701
PspN4I	GGNNCC	6 cut(s)	87, 126, 155, 711, 712, 736
PspPI	GGNCC	1 cut(s)	710
PspPPI	RGGWCCY	1 cut(s)	710
PstNI	CAGNNNCTG	1 cut(s)	17
PsuI	RGATCY	2 cut(s)	124, 746
PsyI	GACNNNGTC	1 cut(s)	72
PvuII	CAGCTG	2 cut(s)	230, 260
RsaI	GTAC	3 cut(s)	172, 634, 700
RsaNI	GTAC	3 cut(s)	171, 633, 699
Sau3AI	GATC	2 cut(s)	124, 746
Sau96I	GGNCC	1 cut(s)	710
ScrFI	CCNGG	2 cut(s)	139, 703
SexAI	ACCWGGT	1 cut(s)	701
SfaNI	GCATC	2 cut(s)	110, 116
SinI	GGWCC	1 cut(s)	710
Sse9I	AATT	3 cut(s)	59, 91, 571
SsiI	CCGC	6 cut(s)	195, 288, 317, 346, 376, 407
SspMI	CTAG	3 cut(s)	516, 648, 750
StyD4I	CCNGG	2 cut(s)	137, 701
TaaI	ACNGT	3 cut(s)	175, 590, 668
TaiI	ACGT	2 cut(s)	219, 508
TasI	AATT	3 cut(s)	59, 91, 571
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	14
TscAI	CASTG	2 cut(s)	461, 660
TspDTI	ATGAA	3 cut(s)	121, 582, 785
TspRI	CASTG	2 cut(s)	461, 660
Tth111I	GACNNNGTC	1 cut(s)	72
VpaK11BI	GGWCC	1 cut(s)	710
XapI	RAATTY	1 cut(s)	91
XceI	RCATGY	1 cut(s)	641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	146
XspI	CTAG	3 cut(s)	516, 648, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.