Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0014799

Physical Location & Seq

Genomic Coordinates Reverse (-)

33190298 .. 33199105

Gene Structure 8808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG212900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGAAAGCAGTCACTTCTATTCTCCACAAAGTTACAGGATCCCAGTCTCCGATTCGATGGGACAAACACGACTTGACCTTGATCGGTTCCGGCTCCTCTGGGCGTGTCTTCTTGGGCAAGGATCAGTCCGGATCGCCTATTGCTGCCAAAGAGTTACTCAGACCTCTACCACCTAAAGCTCAGCATGACCATAAGCTACCCATAGCCTCTTTTCTCAAACATATGGAGAAATCAGATTCTGTTCCTCCAATTCCTGACAATCTTTCTTCTTATGGGAAACAATTTTTGAGACGATGTCTGCAAAGGGAACCAAATTTGAGGGCATCTGCATCCCAGTTGCTTGAGGATCCATTCATAACCAGGCAAAACTTCAGGCACCCATCTGGAGCTGGTACAGTTGTTGGAGCTGTTGCTGCCCCCGTCATTCACCAGCAACACGTAGTTACCCCAGCTGCTCCCAAGCAACGCATTGTTACCCCAGCTGCTCCCAAGCAACGGCTTGTTACCCCAGCTGCTCCCAAGCAACACATTGTTACCCCAGCTGCTCCCAAGCAACGGCTTGTTACCCCTGCTGCTCCCAAGCAACGGCTTGTTATCCCCGCTGCTCCCAAGCAACGACTTGTTATGCCCGCTGCTCCCAAGCAACGGCTTGTTATCCCCGCTGCTCCCAAGCAACGGCTTGTTATGCCCGCTGCTCCCAAGCAACGGCTTGTTATCCCCGCTGCTCCCAAGCAACGCGTTGTTATCCCCGCTGCTCCCAAGCAACGCGTTGTTACCCCACTGCTCCCTCCCAAGCAACACATGGTTACCCCTGCTGCTCCCAAGCAGCGCATTGTTACCCCATCCACACAACGCGTTGTTCACTCAGTTGCTTCACGTCCTGCTGCTAGTCAAGCTACCCGACCTCCAGTCCACTCCAGTTCTCGTTCACATTTGAGTCTCGGTTCGCATTTGAGTTCCAATTTCGGTGTGAATAACGGTTCATCTGTGAGCCTGAACTCCAGCTCCCATTTGAGTTCCGGTACACATTTGAGTTCTAGTTCACTGCTGAGTAACAGTTCACGCGTGAGTAACAACTCCCGTTTGAGTACCTGGTCGGGTCCCAATGCGACATCCATATCTGGTACCAAATCCAGATCTAGCCCCTCGCAACATGTAACGAAACACAATATGTTTTCCAAAGCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

396

Amino Acids

42.31

Weight (kDa)

11.99

Isoelectric Point (pI)

64.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014799)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13230 FvH4_7g13230 FvH4_7g13230 FvH4_7g13230
rosa_chinensis	RchiOBHm_Chr1g0352391
rosa_laevigata	RLG00000028334
rosa_roxburghii	Rroxscaffold_166G00440730 Rroxscaffold_4G00302910
rosa_rugosa	Rorug01G0228400 Rorug01G0228400
rosa_samantha	Rh1AG241600 Rh1AG241700 Rh1BG212900 Rh1CG225500 Rh1DG239200 Rh3BG095500
rosa_wichuraiana	Rw1G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1124
AccB1I	GGYRCC	2 cut(s)	375, 1124
AccII	CGCG	4 cut(s)	738, 768, 855, 1065
AccIII	TCCGGA	1 cut(s)	128
AciI	CCGC	6 cut(s)	600, 630, 660, 690, 720, 750
AclWI	GGATC	6 cut(s)	33, 46, 129, 139, 341, 354
AcsI	RAATTY	1 cut(s)	313
AcuI	CTGAAG	1 cut(s)	355
AfaI	GTAC	4 cut(s)	394, 1024, 1090, 1126
AfiI	CCNNNNNNNGG	6 cut(s)	495, 555, 585, 645, 675, 705
AflIII	ACRYGT	6 cut(s)	436, 736, 766, 853, 1063, 1153
AhdI	GACNNNNNGTC	1 cut(s)	908
AjiI	CACGTC	1 cut(s)	878
AjnI	CCWGG	2 cut(s)	359, 1091
AloI	GAACNNNNNNTCC	2 cut(s)	989, 1021
Alw26I	GTCTC	3 cut(s)	51, 283, 944
AlwI	GGATC	6 cut(s)	33, 46, 129, 139, 341, 354
AlwNI	CAGNNNCTG	1 cut(s)	239
Aor13HI	TCCGGA	1 cut(s)	128
ApoI	RAATTY	1 cut(s)	313
Asp718I	GGTACC	1 cut(s)	1124
AspLEI	GCGC	1 cut(s)	831
AspS9I	GGNCC	1 cut(s)	1100
AsuHPI	GGTGA	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	1100
BaeI	ACNNNNGTAYC	2 cut(s)	384, 417
BamHI	GGATCC	2 cut(s)	38, 346
BanI	GGYRCC	2 cut(s)	375, 1124
BbsI	GAAGAC	1 cut(s)	100
BccI	CCATC	3 cut(s)	51, 388, 850
BceAI	ACGGC	6 cut(s)	512, 572, 602, 662, 692, 722
BciT130I	CCWGG	2 cut(s)	361, 1093
BcoDI	GTCTC	3 cut(s)	51, 283, 944
BfaI	CTAG	3 cut(s)	888, 1038, 1140
BglII	AGATCT	1 cut(s)	1136
BlpI	GCTNAGC	1 cut(s)	180
Bme1390I	CCNGG	2 cut(s)	361, 1093
Bme18I	GGWCC	1 cut(s)	1100
BmeRI	GACNNNNNGTC	1 cut(s)	908
BmgBI	CACGTC	1 cut(s)	878
BmgT120I	GGNCC	1 cut(s)	1100
BmiI	GGNNCC	9 cut(s)	40, 88, 94, 309, 348, 377, 1101, 1102, 1126
BmrFI	CCNGG	2 cut(s)	361, 1093
BmrI	ACTGGG	2 cut(s)	37, 328
BmsI	GCATC	2 cut(s)	332, 338
BmuI	ACTGGG	2 cut(s)	37, 328
BpiI	GAAGAC	1 cut(s)	100
BpmI	CTGGAG	4 cut(s)	405, 891, 901, 985
Bpu1102I	GCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	362
BsaAI	YACGTR	1 cut(s)	439
BsaWI	WCCGGW	2 cut(s)	128, 1019
BsaXI	ACNNNNNCTCC	4 cut(s)	889, 919, 989, 1019
Bsc4I	CCNNNNNNNGG	6 cut(s)	495, 555, 585, 645, 675, 705
Bse1I	ACTGG	4 cut(s)	43, 334, 908, 918
BseAI	TCCGGA	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	361, 1093
BseGI	GGATG	3 cut(s)	329, 842, 1112
BseLI	CCNNNNNNNGG	6 cut(s)	495, 555, 585, 645, 675, 705
BseMII	CTCAG	4 cut(s)	172, 194, 879, 1040
BseNI	ACTGG	4 cut(s)	43, 334, 908, 918
BseRI	GAGGAG	1 cut(s)	85
BseYI	CCCAGC	4 cut(s)	448, 478, 508, 538
Bsh1236I	CGCG	4 cut(s)	738, 768, 855, 1065
BshNI	GGYRCC	2 cut(s)	375, 1124
BsiSI	CCGG	3 cut(s)	90, 129, 1020
BslFI	GGGAC	2 cut(s)	74, 1086
BslI	CCNNNNNNNGG	6 cut(s)	495, 555, 585, 645, 675, 705
BsmAI	GTCTC	3 cut(s)	51, 283, 944
BsmBI	CGTCTC	1 cut(s)	283
BsmFI	GGGAC	2 cut(s)	74, 1086
Bsp13I	TCCGGA	1 cut(s)	128
Bsp143I	GATC	6 cut(s)	38, 81, 121, 131, 346, 1136
Bsp1720I	GCTNAGC	1 cut(s)	180
BspACI	CCGC	6 cut(s)	600, 630, 660, 690, 720, 750
BspCNI	CTCAG	4 cut(s)	171, 193, 878, 1041
BspEI	TCCGGA	1 cut(s)	128
BspFNI	CGCG	4 cut(s)	738, 768, 855, 1065
BspLI	GGNNCC	9 cut(s)	40, 88, 94, 309, 348, 377, 1101, 1102, 1126
BspPI	GGATC	6 cut(s)	33, 46, 129, 139, 341, 354
BspT107I	GGYRCC	2 cut(s)	375, 1124
BsrI	ACTGG	4 cut(s)	43, 334, 908, 918
BssMI	GATC	6 cut(s)	38, 81, 121, 131, 346, 1136
Bst2UI	CCWGG	2 cut(s)	361, 1093
Bst4CI	ACNGT	3 cut(s)	397, 980, 1058
BstBAI	YACGTR	1 cut(s)	439
BstC8I	GCNNGC	2 cut(s)	630, 690
BstDEI	CTNAG	4 cut(s)	158, 180, 865, 1049
BstEII	GGTNACC	1 cut(s)	805
BstF5I	GGATG	3 cut(s)	329, 842, 1112
BstFNI	CGCG	4 cut(s)	738, 768, 855, 1065
BstHHI	GCGC	1 cut(s)	831
BstKTI	GATC	6 cut(s)	41, 84, 124, 134, 349, 1139
BstMAI	GTCTC	3 cut(s)	51, 283, 944
BstMBI	GATC	6 cut(s)	38, 81, 121, 131, 346, 1136
BstMWI	GCNNNNNNNGC	3 cut(s)	413, 685, 893
BstNI	CCWGG	2 cut(s)	361, 1093
BstNSI	RCATGY	1 cut(s)	1157
BstPI	GGTNACC	1 cut(s)	805
BstSCI	CCNGG	2 cut(s)	359, 1091
BstUI	CGCG	4 cut(s)	738, 768, 855, 1065
BstV2I	GAAGAC	1 cut(s)	100
BstX2I	RGATCY	3 cut(s)	38, 346, 1136
BstYI	RGATCY	3 cut(s)	38, 346, 1136
BtrI	CACGTC	1 cut(s)	878
BtsCI	GGATG	3 cut(s)	329, 842, 1112
BtsI	GCAGTG	2 cut(s)	779, 1043
BtsIMutI	CAGTG	2 cut(s)	779, 1043
Cac8I	GCNNGC	2 cut(s)	630, 690
CaiI	CAGNNNCTG	1 cut(s)	239
CfoI	GCGC	1 cut(s)	831
Cfr13I	GGNCC	1 cut(s)	1100
CsiI	ACCWGGT	1 cut(s)	1091
Csp6I	GTAC	4 cut(s)	393, 1023, 1089, 1125
CviAII	CATG	3 cut(s)	185, 802, 1154
CviQI	GTAC	4 cut(s)	393, 1023, 1089, 1125
DdeI	CTNAG	4 cut(s)	158, 180, 865, 1049
DpnI	GATC	6 cut(s)	40, 83, 123, 133, 348, 1138
DpnII	GATC	6 cut(s)	38, 81, 121, 131, 346, 1136
DriI	GACNNNNNGTC	1 cut(s)	908
Eam1105I	GACNNNNNGTC	1 cut(s)	908
Eco47I	GGWCC	1 cut(s)	1100
Eco57I	CTGAAG	1 cut(s)	355
Eco91I	GGTNACC	1 cut(s)	805
EcoO109I	RGGNCCY	1 cut(s)	1100
EcoO65I	GGTNACC	1 cut(s)	805
EcoRII	CCWGG	2 cut(s)	359, 1091
Esp3I	CGTCTC	1 cut(s)	283
FaeI	CATG	3 cut(s)	188, 805, 1157
FaqI	GGGAC	2 cut(s)	74, 1086
FatI	CATG	3 cut(s)	184, 801, 1153
FauI	CCCGC	6 cut(s)	607, 637, 667, 697, 727, 757
FauNDI	CATATG	1 cut(s)	222
FokI	GGATG	3 cut(s)	316, 829, 1099
FspBI	CTAG	3 cut(s)	888, 1038, 1140
GlaI	GCGC	1 cut(s)	830
GsaI	CCCAGC	4 cut(s)	452, 482, 512, 542
GsuI	CTGGAG	4 cut(s)	405, 891, 901, 985
HapII	CCGG	3 cut(s)	90, 129, 1020
HhaI	GCGC	1 cut(s)	831
Hin1II	CATG	3 cut(s)	188, 805, 1157
Hin6I	GCGC	1 cut(s)	829
HinP1I	GCGC	1 cut(s)	829
HinfI	GANTC	3 cut(s)	52, 236, 937
HpaII	CCGG	3 cut(s)	90, 129, 1020
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	6 cut(s)	862, 913, 929, 1025, 1043, 1061
Hpy188I	TCNGA	3 cut(s)	51, 161, 235
Hpy188III	TCNNGA	5 cut(s)	129, 254, 384, 1134, 1188
Hpy8I	GTNNAC	6 cut(s)	862, 913, 929, 1025, 1043, 1061
HpyCH4III	ACNGT	3 cut(s)	397, 980, 1058
HpyCH4IV	ACGT	2 cut(s)	438, 877
HpyCH4V	TGCA	2 cut(s)	301, 329
HpyF10VI	GCNNNNNNNGC	3 cut(s)	413, 685, 893
HpyF3I	CTNAG	4 cut(s)	158, 180, 865, 1049
HpySE526I	ACGT	2 cut(s)	438, 877
Hsp92II	CATG	3 cut(s)	188, 805, 1157
HspAI	GCGC	1 cut(s)	829
KflI	GGGWCCC	1 cut(s)	1100
Kpn2I	TCCGGA	1 cut(s)	128
KpnI	GGTACC	1 cut(s)	1128
Kzo9I	GATC	6 cut(s)	38, 81, 121, 131, 346, 1136
LweI	GCATC	2 cut(s)	332, 338
MabI	ACCWGGT	1 cut(s)	1091
MaeI	CTAG	3 cut(s)	888, 1038, 1140
MaeII	ACGT	2 cut(s)	438, 877
MalI	GATC	6 cut(s)	40, 83, 123, 133, 348, 1138
MboI	GATC	6 cut(s)	38, 81, 121, 131, 346, 1136
MboII	GAAGA	2 cut(s)	100, 258
MflI	RGATCY	3 cut(s)	38, 346, 1136
MluCI	AATT	4 cut(s)	249, 281, 313, 961
MluI	ACGCGT	4 cut(s)	736, 766, 853, 1063
MlyI	GAGTC	1 cut(s)	946
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	9 cut(s)	106, 174, 217, 255, 312, 337, 798, 915, 1156
MroI	TCCGGA	1 cut(s)	128
MspI	CCGG	3 cut(s)	90, 129, 1020
MspR9I	CCNGG	2 cut(s)	361, 1093
MvaI	CCWGG	2 cut(s)	361, 1093
MvnI	CGCG	4 cut(s)	738, 768, 855, 1065
MwoI	GCNNNNNNNGC	3 cut(s)	413, 685, 893
NdeI	CATATG	1 cut(s)	222
NdeII	GATC	6 cut(s)	38, 81, 121, 131, 346, 1136
NlaIII	CATG	3 cut(s)	188, 805, 1157
NlaIV	GGNNCC	9 cut(s)	40, 88, 94, 309, 348, 377, 1101, 1102, 1126
NmuCI	GTSAC	1 cut(s)	10
NspI	RCATGY	1 cut(s)	1157
PciI	ACATGT	1 cut(s)	1153
PfeI	GAWTC	2 cut(s)	52, 236
PflFI	GACNNNGTC	1 cut(s)	294
PleI	GAGTC	1 cut(s)	945
PpsI	GAGTC	1 cut(s)	945
Ppu21I	YACGTR	1 cut(s)	439
PpuMI	RGGWCCY	1 cut(s)	1100
PscI	ACATGT	1 cut(s)	1153
Psp5II	RGGWCCY	1 cut(s)	1100
Psp6I	CCWGG	2 cut(s)	359, 1091
PspEI	GGTNACC	1 cut(s)	805
PspFI	CCCAGC	4 cut(s)	448, 478, 508, 538
PspGI	CCWGG	2 cut(s)	359, 1091
PspN4I	GGNNCC	9 cut(s)	40, 88, 94, 309, 348, 377, 1101, 1102, 1126
PspPI	GGNCC	1 cut(s)	1100
PspPPI	RGGWCCY	1 cut(s)	1100
PstNI	CAGNNNCTG	1 cut(s)	239
PsuI	RGATCY	3 cut(s)	38, 346, 1136
PsyI	GACNNNGTC	1 cut(s)	294
PvuII	CAGCTG	4 cut(s)	452, 482, 512, 542
RsaI	GTAC	4 cut(s)	394, 1024, 1090, 1126
RsaNI	GTAC	4 cut(s)	393, 1023, 1089, 1125
Sau3AI	GATC	6 cut(s)	38, 81, 121, 131, 346, 1136
Sau96I	GGNCC	1 cut(s)	1100
SchI	GAGTC	1 cut(s)	946
ScrFI	CCNGG	2 cut(s)	361, 1093
SexAI	ACCWGGT	1 cut(s)	1091
SfaNI	GCATC	2 cut(s)	332, 338
SinI	GGWCC	1 cut(s)	1100
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	4 cut(s)	249, 281, 313, 961
SsiI	CCGC	6 cut(s)	600, 630, 660, 690, 720, 750
SspMI	CTAG	3 cut(s)	888, 1038, 1140
StyD4I	CCNGG	2 cut(s)	359, 1091
TaaI	ACNGT	3 cut(s)	397, 980, 1058
TaiI	ACGT	2 cut(s)	441, 880
TaqI	TCGA	1 cut(s)	55
TasI	AATT	4 cut(s)	249, 281, 313, 961
TfiI	GAWTC	2 cut(s)	52, 236
TscAI	CASTG	2 cut(s)	786, 1050
TseFI	GTSAC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	3 cut(s)	17, 343, 972
TspRI	CASTG	2 cut(s)	786, 1050
Tth111I	GACNNNGTC	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	1100
XapI	RAATTY	1 cut(s)	313
XceI	RCATGY	1 cut(s)	1157
XcmI	CCANNNNNNNNNTGG	1 cut(s)	799
XspI	CTAG	3 cut(s)	888, 1038, 1140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.