Rroxscaffold_4G00302910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0014799
Physical Location & Seq
Forward (+)
23258110 .. 23258682
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00302910.1

Sequence Viewer

Length: 573 bp
ATGCAGGATCCATTCATAACCAGGCAAAACTTCAGGCACCCATCTGGAGCTGGTACAGTTGTTGGAGCTGTTGCTGCCCCCGTCATTCACCAGCAACACATAGTTACCCCAGCTGCTCCCAAGCAATGCATTGTTACCCCAGCTGCTCCCAAGCAACGGCTTGTTACCCCTGCTGCTCCCAAGCAACGGCTTGTTACCCCTGCTGCTCCCAAGCAACGGCTTGTTACCCCTGCTGCTCCCAAGCAACGGCTTGTTATCCCCGCTGCTCCCAAGCAACGCGTTGTTATCCCCGCTGCTCCCAAGCAACGCATTGTTATCCCACTGCTCCCTCCCAAGCAACACATGGTTACCCCTGCTGCTCCCAAGCAGCGCATTGTTACCCCATCCACACAACGCGTTGTTCACTCAGTTGCTTCATGTCCTGCTGCTAGTCAAGCTACCCGACCTCCAGTCCACTCCAGTTCTCGTTCACATTTGAGTCTCGGTTCGCATTTGAGTTCCAATTCCGGTGTGAATAACAGTTCATCTGTGAGCCTGAACTCCAGCTTCCTTTTGAGCCGGTACACATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

20.14

Weight (kDa)

12.0

Isoelectric Point (pI)

60.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 36
AccII CGCG 2 cut(s) 279, 396
AciI CCGC 2 cut(s) 261, 291
AclWI GGATC 2 cut(s) 2, 15
AcuI CTGAAG 1 cut(s) 16
AfaI GTAC 2 cut(s) 55, 563
AfiI CCNNNNNNNGG 4 cut(s) 156, 186, 216, 246
AflIII ACRYGT 2 cut(s) 277, 394
AhdI GACNNNNNGTC 1 cut(s) 449
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 6 cut(s) 50, 68, 113, 143, 437, 546
AluI AGCT 6 cut(s) 50, 68, 113, 143, 437, 546
Alw26I GTCTC 1 cut(s) 485
AlwI GGATC 2 cut(s) 2, 15
AspLEI GCGC 1 cut(s) 372
AsuHPI GGTGA 1 cut(s) 80
BaeI ACNNNNGTAYC 2 cut(s) 45, 78
BamHI GGATCC 1 cut(s) 7
BanI GGYRCC 1 cut(s) 36
BccI CCATC 2 cut(s) 49, 391
BceAI ACGGC 4 cut(s) 173, 203, 233, 263
BciT130I CCWGG 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 485
BfaI CTAG 1 cut(s) 429
Bme1390I CCNGG 1 cut(s) 22
BmeRI GACNNNNNGTC 1 cut(s) 449
BmiI GGNNCC 2 cut(s) 9, 38
BmrFI CCNGG 1 cut(s) 22
BpmI CTGGAG 4 cut(s) 66, 432, 442, 526
BsaWI WCCGGW 1 cut(s) 506
BsaXI ACNNNNNCTCC 2 cut(s) 430, 460
Bsc4I CCNNNNNNNGG 4 cut(s) 156, 186, 216, 246
Bse118I RCCGGY 1 cut(s) 558
Bse1I ACTGG 2 cut(s) 449, 459
Bse3DI GCAATG 1 cut(s) 131
BseBI CCWGG 1 cut(s) 22
BseGI GGATG 1 cut(s) 383
BseLI CCNNNNNNNGG 4 cut(s) 156, 186, 216, 246
BseMI GCAATG 1 cut(s) 131
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 2 cut(s) 449, 459
BseYI CCCAGC 2 cut(s) 109, 139
Bsh1236I CGCG 2 cut(s) 279, 396
BshNI GGYRCC 1 cut(s) 36
BsiSI CCGG 2 cut(s) 507, 559
BslI CCNNNNNNNGG 4 cut(s) 156, 186, 216, 246
BsmAI GTCTC 1 cut(s) 485
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 2 cut(s) 261, 291
BspCNI CTCAG 1 cut(s) 419
BspFNI CGCG 2 cut(s) 279, 396
BspLI GGNNCC 2 cut(s) 9, 38
BspPI GGATC 2 cut(s) 2, 15
BspT107I GGYRCC 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 131
BsrFI RCCGGY 1 cut(s) 558
BsrI ACTGG 2 cut(s) 449, 459
BssAI RCCGGY 1 cut(s) 558
BssMI GATC 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 22
Bst4CI ACNGT 2 cut(s) 58, 521
BstDEI CTNAG 1 cut(s) 406
BstEII GGTNACC 1 cut(s) 346
BstF5I GGATG 1 cut(s) 383
BstFNI CGCG 2 cut(s) 279, 396
BstHHI GCGC 1 cut(s) 372
BstKTI GATC 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 485
BstMBI GATC 1 cut(s) 7
BstMWI GCNNNNNNNGC 2 cut(s) 74, 434
BstNI CCWGG 1 cut(s) 22
BstPI GGTNACC 1 cut(s) 346
BstSCI CCNGG 1 cut(s) 20
BstUI CGCG 2 cut(s) 279, 396
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BtsCI GGATG 1 cut(s) 383
BtsI GCAGTG 1 cut(s) 320
BtsIMutI CAGTG 1 cut(s) 320
CfoI GCGC 1 cut(s) 372
Cfr10I RCCGGY 1 cut(s) 558
Csp6I GTAC 2 cut(s) 54, 562
CviAII CATG 2 cut(s) 343, 417
CviQI GTAC 2 cut(s) 54, 562
DdeI CTNAG 1 cut(s) 406
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
DriI GACNNNNNGTC 1 cut(s) 449
Eam1105I GACNNNNNGTC 1 cut(s) 449
Eco57I CTGAAG 1 cut(s) 16
Eco91I GGTNACC 1 cut(s) 346
EcoO65I GGTNACC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 20
EcoT22I ATGCAT 1 cut(s) 131
FaeI CATG 2 cut(s) 346, 420
FaiI YATR 4 cut(s) 17, 101, 344, 418
FatI CATG 2 cut(s) 342, 416
FauI CCCGC 2 cut(s) 268, 298
FokI GGATG 1 cut(s) 370
FspBI CTAG 1 cut(s) 429
GlaI GCGC 1 cut(s) 371
GsaI CCCAGC 2 cut(s) 113, 143
GsuI CTGGAG 4 cut(s) 66, 432, 442, 526
HapII CCGG 2 cut(s) 507, 559
HhaI GCGC 1 cut(s) 372
Hin1II CATG 2 cut(s) 346, 420
Hin6I GCGC 1 cut(s) 370
HinP1I GCGC 1 cut(s) 370
HinfI GANTC 1 cut(s) 478
HpaII CCGG 2 cut(s) 507, 559
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 4 cut(s) 403, 454, 470, 564
Hpy188III TCNNGA 1 cut(s) 45
Hpy8I GTNNAC 4 cut(s) 403, 454, 470, 564
HpyCH4III ACNGT 2 cut(s) 58, 521
HpyCH4V TGCA 2 cut(s) 4, 129
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 434
HpyF3I CTNAG 1 cut(s) 406
Hsp92II CATG 2 cut(s) 346, 420
HspAI GCGC 1 cut(s) 370
Kzo9I GATC 1 cut(s) 7
MaeI CTAG 1 cut(s) 429
MaeIII GTNAC 7 cut(s) 103, 133, 163, 193, 223, 346, 376
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MflI RGATCY 1 cut(s) 7
MluCI AATT 1 cut(s) 502
MluI ACGCGT 2 cut(s) 277, 394
MlyI GAGTC 1 cut(s) 487
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 2 cut(s) 339, 456
Mph1103I ATGCAT 1 cut(s) 131
MspA1I CMGCKG 4 cut(s) 113, 143, 263, 293
MspI CCGG 2 cut(s) 507, 559
MspR9I CCNGG 1 cut(s) 22
MvaI CCWGG 1 cut(s) 22
MvnI CGCG 2 cut(s) 279, 396
MwoI GCNNNNNNNGC 2 cut(s) 74, 434
NdeII GATC 1 cut(s) 7
NlaIII CATG 2 cut(s) 346, 420
NlaIV GGNNCC 2 cut(s) 9, 38
NsiI ATGCAT 1 cut(s) 131
PleI GAGTC 1 cut(s) 486
PpsI GAGTC 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 20
PspEI GGTNACC 1 cut(s) 346
PspFI CCCAGC 2 cut(s) 109, 139
PspGI CCWGG 1 cut(s) 20
PspN4I GGNNCC 2 cut(s) 9, 38
PsuI RGATCY 1 cut(s) 7
PvuII CAGCTG 2 cut(s) 113, 143
RsaI GTAC 2 cut(s) 55, 563
RsaNI GTAC 2 cut(s) 54, 562
Sau3AI GATC 1 cut(s) 7
SchI GAGTC 1 cut(s) 487
ScrFI CCNGG 1 cut(s) 22
SetI ASST 7 cut(s) 52, 70, 115, 145, 439, 448, 548
Sse9I AATT 1 cut(s) 502
SsiI CCGC 2 cut(s) 261, 291
SspMI CTAG 1 cut(s) 429
StyD4I CCNGG 1 cut(s) 20
TaaI ACNGT 2 cut(s) 58, 521
TasI AATT 1 cut(s) 502
TscAI CASTG 1 cut(s) 327
TspDTI ATGAA 3 cut(s) 4, 405, 513
TspRI CASTG 1 cut(s) 327
XcmI CCANNNNNNNNNTGG 1 cut(s) 340
XspI CTAG 1 cut(s) 429
Zsp2I ATGCAT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.