Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000166

Orthogroup ID

OG0014799

Physical Location & Seq

Genomic Coordinates Reverse (-)

44070 .. 48276

Gene Structure 4207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_166G00440730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAAAGCAGTCACTTCTATTCTCCACAAAGTTACAAGATCTCAGTCTCCGATTCGATGGGACGAGCACGACTTGACCTTTATCGGTTCCGGCTCCTCTGGGCGTGTCTTCTTGGGCAAGGATCAGTCCGGATCGCCTATTGCTGTCAAAGAGGCTCACATCAGGGAGCTTGATGAAGTGAAGCTTCTACAAAAGTTGTCTCATAAGAACATTGTCAAATATTTGGGTGCGGAGACAAAGGAAGAAACCTCATATATTCTGTTGGAATATGTTCCTGGTGGATCTATTTCAGCACATTTGCTGAAGGGACCTTTCGATGAGGATGGAGCAAATATCCTTATTGATGCTGACGGATGCATTAAACTTGCAGATTTTGGTCTATCTAAACAGTTACTCAGACCTCTACCACCTAAAGCTCAGCATGACCATAAGCTACCCATAGATCCATTCATAACCAGGCAAAACTTCAGGCACCCATCTGGAGCTGGTACAGTTGTTGGAGCTGTTGCTGCCCCCGTCATTCACCAGCAACACATAGTTACCCCAGCTGCTCCCAAGCAATGCATTGTTACCCCAGCTGCTCCCAAGCAACGGCTTGTTACCCCTGCTGCTCCCAAGCAACGGCTTGTTACCCCTGCTGCTCCCAAGCAACGGCTTGTTACCCCTGCTGCTCCCAAGCAACGGCTTGTTATCCCCGCTGCTCCCAAGCAACGCGTTGTTATCCCCGCTGCTCCCAAGCAACGCATTGTTATCCCACTGCTCCCTCCCAAGCAACACATGGTTACCCCTGCTGCTCCCAAGCAGCGCATTGTTACCCCATCCACACAACGCGTTGTTCACTCAGTTGCTTCATGTCCTGCTGCTAGTCAAGCTACCCGACCTCCAGTCCACTCCAGTTCTCGTTCACATTTGAGTCTCGGTTCGCATTTGAGTTCCAATTCCGGTGTGAATAACAGTTCATCTGTGAGCCTGAACTCCAGCTTCCTTTTGAGCCGGTACACATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

335

Amino Acids

36.04

Weight (kDa)

10.22

Isoelectric Point (pI)

58.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	25 - 107	1.2e-10	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	28 - 101	1.7e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014799)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13230 FvH4_7g13230 FvH4_7g13230 FvH4_7g13230
rosa_chinensis	RchiOBHm_Chr1g0352391
rosa_laevigata	RLG00000028334
rosa_roxburghii	Rroxscaffold_166G00440730 Rroxscaffold_4G00302910
rosa_rugosa	Rorug01G0228400 Rorug01G0228400
rosa_samantha	Rh1AG241600 Rh1AG241700 Rh1BG212900 Rh1CG225500 Rh1DG239200 Rh3BG095500
rosa_wichuraiana	Rw1G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	471
AccII	CGCG	2 cut(s)	714, 831
AccIII	TCCGGA	1 cut(s)	128
AciI	CCGC	3 cut(s)	230, 696, 726
AclWI	GGATC	4 cut(s)	129, 139, 289, 437
AcuI	CTGAAG	2 cut(s)	323, 451
AfaI	GTAC	2 cut(s)	490, 998
AfiI	CCNNNNNNNGG	4 cut(s)	591, 621, 651, 681
AflIII	ACRYGT	2 cut(s)	712, 829
AhdI	GACNNNNNGTC	1 cut(s)	884
AjnI	CCWGG	2 cut(s)	274, 455
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	4 cut(s)	51, 204, 227, 920
AlwI	GGATC	4 cut(s)	129, 139, 289, 437
Aor13HI	TCCGGA	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	807
AspS9I	GGNCC	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	515
AvaII	GGWCC	1 cut(s)	308
BaeI	ACNNNNGTAYC	2 cut(s)	480, 513
BanI	GGYRCC	1 cut(s)	471
BbsI	GAAGAC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	69
BccI	CCATC	4 cut(s)	51, 317, 484, 826
BceAI	ACGGC	4 cut(s)	608, 638, 668, 698
BciT130I	CCWGG	2 cut(s)	276, 457
BcoDI	GTCTC	4 cut(s)	51, 204, 227, 920
BfaI	CTAG	1 cut(s)	864
BglII	AGATCT	1 cut(s)	38
BlpI	GCTNAGC	1 cut(s)	417
Bme1390I	CCNGG	2 cut(s)	276, 457
Bme18I	GGWCC	1 cut(s)	308
BmeRI	GACNNNNNGTC	1 cut(s)	884
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	4 cut(s)	88, 94, 309, 473
BmrFI	CCNGG	2 cut(s)	276, 457
BmsI	GCATC	2 cut(s)	334, 344
BpiI	GAAGAC	1 cut(s)	100
BpmI	CTGGAG	4 cut(s)	501, 867, 877, 961
Bpu1102I	GCTNAGC	1 cut(s)	417
BsaWI	WCCGGW	2 cut(s)	128, 941
BsaXI	ACNNNNNCTCC	2 cut(s)	865, 895
Bsc4I	CCNNNNNNNGG	4 cut(s)	591, 621, 651, 681
Bse118I	RCCGGY	1 cut(s)	993
Bse1I	ACTGG	2 cut(s)	884, 894
Bse3DI	GCAATG	1 cut(s)	566
BseAI	TCCGGA	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	276, 457
BseGI	GGATG	3 cut(s)	328, 359, 818
BseLI	CCNNNNNNNGG	4 cut(s)	591, 621, 651, 681
BseMI	GCAATG	1 cut(s)	566
BseMII	CTCAG	4 cut(s)	56, 409, 431, 855
BseNI	ACTGG	2 cut(s)	884, 894
BseRI	GAGGAG	1 cut(s)	85
BseYI	CCCAGC	2 cut(s)	544, 574
Bsh1236I	CGCG	2 cut(s)	714, 831
BshNI	GGYRCC	1 cut(s)	471
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	4 cut(s)	90, 129, 942, 994
BslFI	GGGAC	2 cut(s)	74, 321
BslI	CCNNNNNNNGG	4 cut(s)	591, 621, 651, 681
BsmAI	GTCTC	4 cut(s)	51, 204, 227, 920
BsmFI	GGGAC	2 cut(s)	74, 321
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp13I	TCCGGA	1 cut(s)	128
Bsp143I	GATC	5 cut(s)	38, 121, 131, 281, 442
Bsp1720I	GCTNAGC	1 cut(s)	417
BspACI	CCGC	3 cut(s)	230, 696, 726
BspCNI	CTCAG	4 cut(s)	55, 408, 430, 854
BspEI	TCCGGA	1 cut(s)	128
BspFNI	CGCG	2 cut(s)	714, 831
BspLI	GGNNCC	4 cut(s)	88, 94, 309, 473
BspPI	GGATC	4 cut(s)	129, 139, 289, 437
BspT107I	GGYRCC	1 cut(s)	471
BsrDI	GCAATG	1 cut(s)	566
BsrFI	RCCGGY	1 cut(s)	993
BsrI	ACTGG	2 cut(s)	884, 894
BssAI	RCCGGY	1 cut(s)	993
BssMI	GATC	5 cut(s)	38, 121, 131, 281, 442
Bst2UI	CCWGG	2 cut(s)	276, 457
Bst4CI	ACNGT	3 cut(s)	390, 493, 956
BstDEI	CTNAG	4 cut(s)	42, 395, 417, 841
BstEII	GGTNACC	1 cut(s)	781
BstF5I	GGATG	3 cut(s)	328, 359, 818
BstFNI	CGCG	2 cut(s)	714, 831
BstHHI	GCGC	1 cut(s)	807
BstKTI	GATC	5 cut(s)	41, 124, 134, 284, 445
BstMAI	GTCTC	4 cut(s)	51, 204, 227, 920
BstMBI	GATC	5 cut(s)	38, 121, 131, 281, 442
BstMWI	GCNNNNNNNGC	2 cut(s)	509, 869
BstNI	CCWGG	2 cut(s)	276, 457
BstPI	GGTNACC	1 cut(s)	781
BstSCI	CCNGG	2 cut(s)	274, 455
BstUI	CGCG	2 cut(s)	714, 831
BstV2I	GAAGAC	1 cut(s)	100
BstX2I	RGATCY	3 cut(s)	38, 281, 442
BstYI	RGATCY	3 cut(s)	38, 281, 442
BtsCI	GGATG	3 cut(s)	328, 359, 818
BtsI	GCAGTG	1 cut(s)	755
BtsIMutI	CAGTG	1 cut(s)	755
CfoI	GCGC	1 cut(s)	807
Cfr10I	RCCGGY	1 cut(s)	993
Cfr13I	GGNCC	1 cut(s)	308
Csp6I	GTAC	2 cut(s)	489, 997
CviAII	CATG	3 cut(s)	422, 778, 852
CviQI	GTAC	2 cut(s)	489, 997
DdeI	CTNAG	4 cut(s)	42, 395, 417, 841
DpnI	GATC	5 cut(s)	40, 123, 133, 283, 444
DpnII	GATC	5 cut(s)	38, 121, 131, 281, 442
DriI	GACNNNNNGTC	1 cut(s)	884
Eam1105I	GACNNNNNGTC	1 cut(s)	884
Eco47I	GGWCC	1 cut(s)	308
Eco57I	CTGAAG	2 cut(s)	323, 451
Eco91I	GGTNACC	1 cut(s)	781
EcoO109I	RGGNCCY	1 cut(s)	308
EcoO65I	GGTNACC	1 cut(s)	781
EcoRII	CCWGG	2 cut(s)	274, 455
EcoT22I	ATGCAT	2 cut(s)	359, 566
FaeI	CATG	3 cut(s)	425, 781, 855
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FaqI	GGGAC	2 cut(s)	74, 321
FatI	CATG	3 cut(s)	421, 777, 851
FauI	CCCGC	2 cut(s)	703, 733
FokI	GGATG	3 cut(s)	335, 366, 805
FspBI	CTAG	1 cut(s)	864
GlaI	GCGC	1 cut(s)	806
GsaI	CCCAGC	2 cut(s)	548, 578
GsuI	CTGGAG	4 cut(s)	501, 867, 877, 961
HapII	CCGG	4 cut(s)	90, 129, 942, 994
HhaI	GCGC	1 cut(s)	807
Hin1II	CATG	3 cut(s)	425, 781, 855
Hin6I	GCGC	1 cut(s)	805
HinP1I	GCGC	1 cut(s)	805
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	2 cut(s)	52, 913
HpaII	CCGG	4 cut(s)	90, 129, 942, 994
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	4 cut(s)	838, 889, 905, 999
Hpy188I	TCNGA	2 cut(s)	51, 398
Hpy188III	TCNNGA	2 cut(s)	129, 480
Hpy8I	GTNNAC	4 cut(s)	838, 889, 905, 999
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	3 cut(s)	390, 493, 956
HpyCH4V	TGCA	3 cut(s)	357, 368, 564
HpyF10VI	GCNNNNNNNGC	2 cut(s)	509, 869
HpyF3I	CTNAG	4 cut(s)	42, 395, 417, 841
Hsp92II	CATG	3 cut(s)	425, 781, 855
HspAI	GCGC	1 cut(s)	805
Kpn2I	TCCGGA	1 cut(s)	128
Kzo9I	GATC	5 cut(s)	38, 121, 131, 281, 442
LweI	GCATC	2 cut(s)	334, 344
MaeI	CTAG	1 cut(s)	864
MalI	GATC	5 cut(s)	40, 123, 133, 283, 444
MboI	GATC	5 cut(s)	38, 121, 131, 281, 442
MboII	GAAGA	2 cut(s)	100, 254
MflI	RGATCY	3 cut(s)	38, 281, 442
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	1 cut(s)	937
MluI	ACGCGT	2 cut(s)	712, 829
MlyI	GAGTC	1 cut(s)	922
MmeI	TCCRAC	2 cut(s)	243, 478
MnlI	CCTC	7 cut(s)	106, 145, 259, 313, 411, 774, 891
Mph1103I	ATGCAT	2 cut(s)	359, 566
MroI	TCCGGA	1 cut(s)	128
MroXI	GAANNNNTTC	1 cut(s)	270
MseI	TTAA	1 cut(s)	360
MspA1I	CMGCKG	4 cut(s)	548, 578, 698, 728
MspI	CCGG	4 cut(s)	90, 129, 942, 994
MspR9I	CCNGG	2 cut(s)	276, 457
MvaI	CCWGG	2 cut(s)	276, 457
MvnI	CGCG	2 cut(s)	714, 831
MwoI	GCNNNNNNNGC	2 cut(s)	509, 869
NdeII	GATC	5 cut(s)	38, 121, 131, 281, 442
NlaIII	CATG	3 cut(s)	425, 781, 855
NlaIV	GGNNCC	4 cut(s)	88, 94, 309, 473
NmuCI	GTSAC	1 cut(s)	10
NsiI	ATGCAT	2 cut(s)	359, 566
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	921
PpsI	GAGTC	1 cut(s)	921
PpuMI	RGGWCCY	1 cut(s)	308
Psp5II	RGGWCCY	1 cut(s)	308
Psp6I	CCWGG	2 cut(s)	274, 455
PspEI	GGTNACC	1 cut(s)	781
PspFI	CCCAGC	2 cut(s)	544, 574
PspGI	CCWGG	2 cut(s)	274, 455
PspN4I	GGNNCC	4 cut(s)	88, 94, 309, 473
PspPI	GGNCC	1 cut(s)	308
PspPPI	RGGWCCY	1 cut(s)	308
PsuI	RGATCY	3 cut(s)	38, 281, 442
PvuII	CAGCTG	2 cut(s)	548, 578
RsaI	GTAC	2 cut(s)	490, 998
RsaNI	GTAC	2 cut(s)	489, 997
SaqAI	TTAA	1 cut(s)	360
Sau3AI	GATC	5 cut(s)	38, 121, 131, 281, 442
Sau96I	GGNCC	1 cut(s)	308
SchI	GAGTC	1 cut(s)	922
ScrFI	CCNGG	2 cut(s)	276, 457
SduI	GDGCHC	1 cut(s)	69
SfaNI	GCATC	2 cut(s)	334, 344
SinI	GGWCC	1 cut(s)	308
Sse9I	AATT	1 cut(s)	937
SsiI	CCGC	3 cut(s)	230, 696, 726
SspI	AATATT	1 cut(s)	221
SspMI	CTAG	1 cut(s)	864
StyD4I	CCNGG	2 cut(s)	274, 455
TaaI	ACNGT	3 cut(s)	390, 493, 956
TaqI	TCGA	2 cut(s)	55, 315
TasI	AATT	1 cut(s)	937
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	1 cut(s)	762
TseFI	GTSAC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	5 cut(s)	17, 189, 439, 840, 948
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	1 cut(s)	762
VpaK11BI	GGWCC	1 cut(s)	308
XcmI	CCANNNNNNNNNTGG	1 cut(s)	775
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	1 cut(s)	864
Zsp2I	ATGCAT	2 cut(s)	359, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.