Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0014799

Physical Location & Seq

Genomic Coordinates Reverse (-)

45282211 .. 45321080

Gene Structure 38870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG241700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTGGGTCAAAGAATTAAAGGAGAGAGCTATGAGCGTGCTTAGTCCATGCTGCCTGGTTGAGTCACATGAGCTTTCGCATGATAGTAACCAAACTACACAAGCCTCTGAAAGTGGTCCTCTACCATTTGTCTCTCTTTTGGAGTTTGTGAGTGGAATTTATCGGAAGGAGCCAGAGCAATTGTCTGGCAATGACGCCTTGTGGACATTTGCAAAATTTGCTGGAGAGGACGATTCAAATTTTCAAACTCTTATGGCTCTCTTGAATATGCTGAGTACCTTCAAATATTTGGGTGCAGATACAAAGGAAGAAACCTCATATATTCTGTTGGAATATGTTCCGGGTGGATCTATTTCAGCACATTTGATGAAGGGAGCTTTCGATGAGGATAAAATAAGAACGTACATGCAGCAGCTGTTGTTGGGACTACAATATTTACACCAAAAAGAAATCACGCATGGTGACATTAAGGTAAGAAGGGATTTGAGGCTTTTACAATCAACTAAGTTGGAGGAGATTTTGGGATGCTGTTTCCAAACTATCACTGGAAAGAGACAAAGAAAAATGTGCATCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup192

Protein Analysis

192

Amino Acids

21.9

Weight (kDa)

5.76

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	84 - 159	6.3e-08	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	94 - 158	1.8e-12	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014799)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13230 FvH4_7g13230 FvH4_7g13230 FvH4_7g13230
rosa_chinensis	RchiOBHm_Chr1g0352391
rosa_laevigata	RLG00000028334
rosa_roxburghii	Rroxscaffold_166G00440730 Rroxscaffold_4G00302910
rosa_rugosa	Rorug01G0228400 Rorug01G0228400
rosa_samantha	Rh1AG241600 Rh1AG241700 Rh1BG212900 Rh1CG225500 Rh1DG239200 Rh3BG095500
rosa_wichuraiana	Rw1G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	355
AcsI	RAATTY	3 cut(s)	156, 215, 238
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	2 cut(s)	277, 404
AgsI	TTSAA	4 cut(s)	237, 245, 265, 283
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	4 cut(s)	29, 73, 377, 415
AluI	AGCT	4 cut(s)	29, 73, 377, 415
Alw26I	GTCTC	2 cut(s)	136, 547
AlwI	GGATC	1 cut(s)	355
AlwNI	CAGNNNCTG	1 cut(s)	415
ApeKI	GCWGC	3 cut(s)	51, 409, 412
ApoI	RAATTY	3 cut(s)	156, 215, 238
Asp700I	GAANNNNTTC	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	116
AsuC2I	CCSGG	1 cut(s)	342
AsuHPI	GGTGA	1 cut(s)	473
AvaII	GGWCC	1 cut(s)	116
BbvI	GCAGC	3 cut(s)	38, 421, 424
BciT130I	CCWGG	1 cut(s)	56
BcnI	CCSGG	1 cut(s)	342
BcoDI	GTCTC	2 cut(s)	136, 547
BisI	GCNGC	3 cut(s)	52, 410, 413
BlsI	GCNGC	3 cut(s)	53, 411, 414
Bme1390I	CCNGG	2 cut(s)	56, 342
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	2 cut(s)	56, 342
BmsI	GCATC	1 cut(s)	515
BpmI	CTGGAG	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	342
BsaHI	GRCGYC	1 cut(s)	195
Bse1I	ACTGG	1 cut(s)	550
Bse3DI	GCAATG	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	56
BseGI	GGATG	1 cut(s)	530
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	263
BseNI	ACTGG	1 cut(s)	550
BseRI	GAGGAG	1 cut(s)	527
BseXI	GCAGC	3 cut(s)	38, 421, 424
BsgI	GTGCAG	1 cut(s)	315
BsiSI	CCGG	1 cut(s)	341
BslFI	GGGAC	1 cut(s)	438
BsmAI	GTCTC	2 cut(s)	136, 547
BsmFI	GGGAC	1 cut(s)	438
Bsp143I	GATC	1 cut(s)	347
BspCNI	CTCAG	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	171
BspPI	GGATC	1 cut(s)	355
BsrDI	GCAATG	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	550
BssMI	GATC	1 cut(s)	347
BssNI	GRCGYC	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	56
BstACI	GRCGYC	1 cut(s)	195
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	3 cut(s)	41, 272, 504
BstF5I	GGATG	1 cut(s)	530
BstKTI	GATC	1 cut(s)	350
BstMAI	GTCTC	2 cut(s)	136, 547
BstMBI	GATC	1 cut(s)	347
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	2 cut(s)	54, 340
BstV1I	GCAGC	3 cut(s)	38, 421, 424
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	530
BtsIMutI	CAGTG	1 cut(s)	543
Cac8I	GCNNGC	1 cut(s)	38
CaiI	CAGNNNCTG	1 cut(s)	415
Cfr13I	GGNCC	1 cut(s)	116
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	2 cut(s)	276, 403
CviAII	CATG	5 cut(s)	48, 68, 80, 406, 458
CviJI	RGCY	8 cut(s)	29, 73, 104, 172, 257, 377, 415, 490
CviKI_1	RGCY	8 cut(s)	29, 73, 104, 172, 257, 377, 415, 490
CviQI	GTAC	2 cut(s)	276, 403
DdeI	CTNAG	3 cut(s)	41, 272, 504
DpnI	GATC	1 cut(s)	349
DpnII	GATC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	54
FaeI	CATG	5 cut(s)	51, 71, 83, 409, 461
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	5 cut(s)	47, 67, 79, 405, 457
Fnu4HI	GCNGC	3 cut(s)	52, 410, 413
FokI	GGATG	1 cut(s)	537
Fsp4HI	GCNGC	3 cut(s)	52, 410, 413
GluI	GCNGC	3 cut(s)	52, 410, 413
GsuI	CTGGAG	1 cut(s)	243
HapII	CCGG	1 cut(s)	341
HgaI	GACGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	5 cut(s)	51, 71, 83, 409, 461
HinfI	GANTC	2 cut(s)	62, 233
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	1 cut(s)	473
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	2 cut(s)	109, 165
Hpy188III	TCNNGA	1 cut(s)	262
Hpy8I	GTNNAC	1 cut(s)	204
HpyAV	CCTTC	4 cut(s)	160, 289, 364, 471
HpyCH4IV	ACGT	1 cut(s)	401
HpyCH4V	TGCA	4 cut(s)	212, 296, 409, 570
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	3 cut(s)	41, 272, 504
HpySE526I	ACGT	1 cut(s)	401
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	5 cut(s)	51, 71, 83, 409, 461
Kzo9I	GATC	1 cut(s)	347
LmnI	GCTCC	2 cut(s)	169, 374
LpnPI	CCDG	7 cut(s)	41, 68, 171, 186, 207, 354, 531
Lsp1109I	GCAGC	3 cut(s)	38, 421, 424
LweI	GCATC	1 cut(s)	515
MaeII	ACGT	1 cut(s)	401
MaeIII	GTNAC	3 cut(s)	63, 86, 461
MalI	GATC	1 cut(s)	349
MboI	GATC	1 cut(s)	347
MboII	GAAGA	1 cut(s)	320
MfeI	CAATTG	1 cut(s)	179
MflI	RGATCY	1 cut(s)	347
MluCI	AATT	5 cut(s)	14, 156, 179, 215, 238
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	2 cut(s)	309, 489
MnlI	CCTC	7 cut(s)	115, 129, 220, 325, 379, 480, 505
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	2 cut(s)	17, 468
MspA1I	CMGCKG	1 cut(s)	415
MspI	CCGG	1 cut(s)	341
MspR9I	CCNGG	2 cut(s)	56, 342
MunI	CAATTG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	218
NciI	CCSGG	1 cut(s)	342
NdeII	GATC	1 cut(s)	347
NlaIII	CATG	5 cut(s)	51, 71, 83, 409, 461
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	2 cut(s)	63, 461
NspI	RCATGY	1 cut(s)	409
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	3 cut(s)	53, 411, 414
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	116
PstNI	CAGNNNCTG	1 cut(s)	415
PsuI	RGATCY	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	415
RsaI	GTAC	2 cut(s)	277, 404
RsaNI	GTAC	2 cut(s)	276, 403
SaqAI	TTAA	2 cut(s)	17, 468
SatI	GCNGC	3 cut(s)	52, 410, 413
Sau3AI	GATC	1 cut(s)	347
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	2 cut(s)	56, 342
SetI	ASST	8 cut(s)	31, 75, 281, 317, 379, 404, 417, 474
SfaNI	GCATC	1 cut(s)	515
SinI	GGWCC	1 cut(s)	116
Sse9I	AATT	5 cut(s)	14, 156, 179, 215, 238
SspI	AATATT	2 cut(s)	287, 434
StyD4I	CCNGG	2 cut(s)	54, 340
TaiI	ACGT	1 cut(s)	404
TaqI	TCGA	1 cut(s)	381
TasI	AATT	5 cut(s)	14, 156, 179, 215, 238
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	2 cut(s)	17, 468
Tru9I	TTAA	2 cut(s)	17, 468
TscAI	CASTG	1 cut(s)	550
TseFI	GTSAC	2 cut(s)	63, 461
TseI	GCWGC	3 cut(s)	51, 409, 412
Tsp45I	GTSAC	2 cut(s)	63, 461
TspDTI	ATGAA	1 cut(s)	383
TspRI	CASTG	1 cut(s)	550
VpaK11BI	GGWCC	1 cut(s)	116
XapI	RAATTY	3 cut(s)	156, 215, 238
XceI	RCATGY	1 cut(s)	409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XmnI	GAANNNNTTC	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.