Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0014799

Physical Location & Seq

Genomic Coordinates Reverse (-)

45354399 .. 45363206

Gene Structure 8808 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG239200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1524 bp

ATGAAAGCAGTCACTTCTATTCTCCACAAAGTTACAGGATCCCAGTCTCCGATTCGATGGGACAAACACGACTTGACCTTGATCGGTTCCGGCTCCTCTGGGCGTGTCTTCTTGGGCAAGGATCAGTCCGGATCGCCTATTGCTGCCAAAGAGAAATATTTGGGTGCGGAGACAAAGGAAGAAACCTCATATATTCTGTTGGAATATGTTCCTGGTGGATCTATTTCAGCACATTTGATGAAGGGACCTTTCGATGAGGAACAGCTGTTGTTGGGACTACAATATTTACACCAAAAAGAAATCACGCATGGTGACATTAAGGGAGCAAATATCCTTATTGATGCTGACAGATGCATTAAACTTGCAGATTTTGGTCTATCTAAACAGGGTGCACAACTCTGGATGGCTCCTGAAGTCCTTCTCCAGAAGGATCTGCATAATTGCAGATTTACTGATAAGCCTGATATATGGAGTGTGGGGTGCACTGTTATTGAGATGGCCGCTGGAGATCCTTGGAGGGGAAATTACCAGGCAGGGGCCTCTTTTCTCAAACATATGGAGAAATCAGATTCTGTTCCTCCAATTCCTGACAATCTTTCTTCTTATGGGAAACAATTTTTGAGACGATGTCTGCAAAGGGAACCAAATTTGAGGGCATCTGCATCCCAGTTGCTTGAGGATCCATTCATAACCAGGCAAAACTTCAGGCACCCATCTGGAGCTGGTACAGTTGTTGGAGCTGTTGCTGCCCCCGTCATTCACCAGCAACACGTAGTTACCCCAGCTGCTCCCAAGCAACGCATTGTTACCCCAGCTGCTCCCAAGCAACGGCTTGTTACCCCAGCTGCTCCCAAGCAACACATTGTTACCCCAGCTGCTCCCAAGCAACGGCTTGTTACCCCTGCTGCTCCCAAGCAACGGCTTGTTATCCCCGCTGCTCCCAAGCAACGACTTGTTATGCCCGCTGCTCCCAAGCAACGGCTTGTTATCCCCGCTGCTCCCAAGCAACGGCTTGTTATGCCCGCTGCTCCCAAGCAACGGCTTGTTATCCCCGCTGCTCCCAAGCAACGCGTTGTTATCCCCGCTGCTCCCAAGCAACGCGTTGTTACCCCACTGCTCCCTCCCAAGCAACACATGGTTACCCCTGCTGCTCCCAAGCAGCGCATTGTTACCCCATCCACACAACGCGTTGTTCACTCAGTTGCTTCACGTCCTGCTGCTAGTCAAGCTACCCGACCTCCAGTCCACTCCAGTTCTCGTTCACATTTGAGTCTCGGTTCGCATTTGAGTTCCAATTTCGGTGTGAATAACGGTTCATCTGTGAGCCTGAACTCCAGCTCCCATTTGAGTTCCGGTACACATTTGAGTTCTAGTTCACTGCTGAGTAACAGTTCACGCGTGAGTAACAACTCCCGTTTGAGTACCTGGTCGGGTCCCAATGCGACATCCATATCTGGTACCAAATCCAGATCTAGCCCCTCGCAACATGTAACGAAACACAATATGTTTTCCAAAGCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

507

Amino Acids

54.58

Weight (kDa)

10.43

Isoelectric Point (pI)

57.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	52 - 226	1.1e-21	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	54 - 230	1.4e-32	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014799)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13230 FvH4_7g13230 FvH4_7g13230 FvH4_7g13230
rosa_chinensis	RchiOBHm_Chr1g0352391
rosa_laevigata	RLG00000028334
rosa_roxburghii	Rroxscaffold_166G00440730 Rroxscaffold_4G00302910
rosa_rugosa	Rorug01G0228400 Rorug01G0228400
rosa_samantha	Rh1AG241600 Rh1AG241700 Rh1BG212900 Rh1CG225500 Rh1DG239200 Rh3BG095500
rosa_wichuraiana	Rw1G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1457
AccB1I	GGYRCC	2 cut(s)	708, 1457
AccII	CGCG	4 cut(s)	1071, 1101, 1188, 1398
AccIII	TCCGGA	1 cut(s)	128
AciI	CCGC	8 cut(s)	167, 501, 933, 963, 993, 1023, 1053, 1083
AclWI	GGATC	9 cut(s)	33, 46, 129, 139, 226, 438, 503, 674, 687
AcoI	YGGCCR	1 cut(s)	498
AcsI	RAATTY	1 cut(s)	646
AcuI	CTGAAG	2 cut(s)	432, 688
AfaI	GTAC	4 cut(s)	727, 1357, 1423, 1459
AfiI	CCNNNNNNNGG	8 cut(s)	518, 535, 828, 888, 918, 978, 1008, 1038
AflIII	ACRYGT	6 cut(s)	769, 1069, 1099, 1186, 1396, 1486
AhdI	GACNNNNNGTC	1 cut(s)	1241
AjiI	CACGTC	1 cut(s)	1211
AjnI	CCWGG	4 cut(s)	211, 528, 692, 1424
AloI	GAACNNNNNNTCC	2 cut(s)	1322, 1354
AluBI	AGCT	9 cut(s)	265, 722, 740, 785, 815, 845, 875, 1229, 1338
AluI	AGCT	9 cut(s)	265, 722, 740, 785, 815, 845, 875, 1229, 1338
Alw21I	GWGCWC	2 cut(s)	394, 485
Alw26I	GTCTC	4 cut(s)	51, 164, 616, 1277
Alw44I	GTGCAC	2 cut(s)	390, 481
AlwI	GGATC	9 cut(s)	33, 46, 129, 139, 226, 438, 503, 674, 687
AlwNI	CAGNNNCTG	1 cut(s)	572
Aor13HI	TCCGGA	1 cut(s)	128
AoxI	GGCC	2 cut(s)	498, 537
ApaLI	GTGCAC	2 cut(s)	390, 481
ApoI	RAATTY	1 cut(s)	646
Asp700I	GAANNNNTTC	2 cut(s)	207, 417
Asp718I	GGTACC	1 cut(s)	1457
AspLEI	GCGC	1 cut(s)	1164
AspS9I	GGNCC	3 cut(s)	245, 537, 1433
AsuHPI	GGTGA	2 cut(s)	323, 752
AvaII	GGWCC	2 cut(s)	245, 1433
BaeGI	GKGCMC	2 cut(s)	394, 485
BaeI	ACNNNNGTAYC	2 cut(s)	717, 750
BamHI	GGATCC	2 cut(s)	38, 679
BanI	GGYRCC	2 cut(s)	708, 1457
BbsI	GAAGAC	1 cut(s)	100
Bbv12I	GWGCWC	2 cut(s)	394, 485
BccI	CCATC	5 cut(s)	51, 397, 490, 721, 1183
BceAI	ACGGC	6 cut(s)	845, 905, 935, 995, 1025, 1055
BciT130I	CCWGG	4 cut(s)	213, 530, 694, 1426
BcoDI	GTCTC	4 cut(s)	51, 164, 616, 1277
BfaI	CTAG	3 cut(s)	1221, 1371, 1473
BglII	AGATCT	1 cut(s)	1469
Bme1390I	CCNGG	4 cut(s)	213, 530, 694, 1426
Bme18I	GGWCC	2 cut(s)	245, 1433
BmeRI	GACNNNNNGTC	1 cut(s)	1241
BmgBI	CACGTC	1 cut(s)	1211
BmgT120I	GGNCC	3 cut(s)	245, 537, 1433
BmrFI	CCNGG	4 cut(s)	213, 530, 694, 1426
BmrI	ACTGGG	2 cut(s)	37, 661
BmsI	GCATC	4 cut(s)	331, 341, 665, 671
BmuI	ACTGGG	2 cut(s)	37, 661
BpiI	GAAGAC	1 cut(s)	100
BpmI	CTGGAG	6 cut(s)	407, 525, 738, 1224, 1234, 1318
BpuEI	CTTGAG	1 cut(s)	695
BsaAI	YACGTR	1 cut(s)	772
BsaJI	CCNNGG	1 cut(s)	512
BsaWI	WCCGGW	2 cut(s)	128, 1352
BsaXI	ACNNNNNCTCC	4 cut(s)	1222, 1252, 1322, 1352
Bsc4I	CCNNNNNNNGG	8 cut(s)	518, 535, 828, 888, 918, 978, 1008, 1038
Bse1I	ACTGG	4 cut(s)	43, 667, 1241, 1251
BseAI	TCCGGA	1 cut(s)	128
BseBI	CCWGG	4 cut(s)	213, 530, 694, 1426
BseDI	CCNNGG	1 cut(s)	512
BseGI	GGATG	4 cut(s)	408, 662, 1175, 1445
BseLI	CCNNNNNNNGG	8 cut(s)	518, 535, 828, 888, 918, 978, 1008, 1038
BseMII	CTCAG	2 cut(s)	1212, 1373
BseNI	ACTGG	4 cut(s)	43, 667, 1241, 1251
BseRI	GAGGAG	1 cut(s)	85
BseSI	GKGCMC	2 cut(s)	394, 485
BseYI	CCCAGC	4 cut(s)	781, 811, 841, 871
Bsh1236I	CGCG	4 cut(s)	1071, 1101, 1188, 1398
BshFI	GGCC	2 cut(s)	500, 539
BshNI	GGYRCC	2 cut(s)	708, 1457
BsiHKAI	GWGCWC	2 cut(s)	394, 485
BsiSI	CCGG	3 cut(s)	90, 129, 1353
BslFI	GGGAC	4 cut(s)	74, 258, 288, 1419
BslI	CCNNNNNNNGG	8 cut(s)	518, 535, 828, 888, 918, 978, 1008, 1038
BsmAI	GTCTC	4 cut(s)	51, 164, 616, 1277
BsmBI	CGTCTC	1 cut(s)	616
BsmFI	GGGAC	4 cut(s)	74, 258, 288, 1419
BsnI	GGCC	2 cut(s)	500, 539
Bsp1286I	GDGCHC	2 cut(s)	394, 485
Bsp13I	TCCGGA	1 cut(s)	128
Bsp143I	GATC	9 cut(s)	38, 81, 121, 131, 218, 430, 508, 679, 1469
BspACI	CCGC	8 cut(s)	167, 501, 933, 963, 993, 1023, 1053, 1083
BspANI	GGCC	2 cut(s)	500, 539
BspCNI	CTCAG	2 cut(s)	1211, 1374
BspEI	TCCGGA	1 cut(s)	128
BspFNI	CGCG	4 cut(s)	1071, 1101, 1188, 1398
BspPI	GGATC	9 cut(s)	33, 46, 129, 139, 226, 438, 503, 674, 687
BspT107I	GGYRCC	2 cut(s)	708, 1457
BsrI	ACTGG	4 cut(s)	43, 667, 1241, 1251
BssECI	CCNNGG	1 cut(s)	512
BssMI	GATC	9 cut(s)	38, 81, 121, 131, 218, 430, 508, 679, 1469
BssT1I	CCWWGG	1 cut(s)	512
Bst2UI	CCWGG	4 cut(s)	213, 530, 694, 1426
Bst4CI	ACNGT	4 cut(s)	487, 730, 1313, 1391
BstBAI	YACGTR	1 cut(s)	772
BstC8I	GCNNGC	2 cut(s)	963, 1023
BstDEI	CTNAG	2 cut(s)	1198, 1382
BstEII	GGTNACC	1 cut(s)	1138
BstF5I	GGATG	4 cut(s)	408, 662, 1175, 1445
BstFNI	CGCG	4 cut(s)	1071, 1101, 1188, 1398
BstHHI	GCGC	1 cut(s)	1164
BstKTI	GATC	9 cut(s)	41, 84, 124, 134, 221, 433, 511, 682, 1472
BstMAI	GTCTC	4 cut(s)	51, 164, 616, 1277
BstMBI	GATC	9 cut(s)	38, 81, 121, 131, 218, 430, 508, 679, 1469
BstMWI	GCNNNNNNNGC	3 cut(s)	746, 1018, 1226
BstNI	CCWGG	4 cut(s)	213, 530, 694, 1426
BstNSI	RCATGY	1 cut(s)	1490
BstPI	GGTNACC	1 cut(s)	1138
BstSCI	CCNGG	4 cut(s)	211, 528, 692, 1424
BstSLI	GKGCMC	2 cut(s)	394, 485
BstUI	CGCG	4 cut(s)	1071, 1101, 1188, 1398
BstV2I	GAAGAC	1 cut(s)	100
BstX2I	RGATCY	6 cut(s)	38, 218, 430, 508, 679, 1469
BstYI	RGATCY	6 cut(s)	38, 218, 430, 508, 679, 1469
BsuRI	GGCC	2 cut(s)	500, 539
BtrI	CACGTC	1 cut(s)	1211
BtsCI	GGATG	4 cut(s)	408, 662, 1175, 1445
BtsI	GCAGTG	2 cut(s)	1112, 1376
BtsIMutI	CAGTG	3 cut(s)	483, 1112, 1376
Cac8I	GCNNGC	2 cut(s)	963, 1023
CaiI	CAGNNNCTG	1 cut(s)	572
CfoI	GCGC	1 cut(s)	1164
Cfr13I	GGNCC	3 cut(s)	245, 537, 1433
CsiI	ACCWGGT	1 cut(s)	1424
Csp6I	GTAC	4 cut(s)	726, 1356, 1422, 1458
CviAII	CATG	3 cut(s)	308, 1135, 1487
CviQI	GTAC	4 cut(s)	726, 1356, 1422, 1458
DdeI	CTNAG	2 cut(s)	1198, 1382
DpnI	GATC	9 cut(s)	40, 83, 123, 133, 220, 432, 510, 681, 1471
DpnII	GATC	9 cut(s)	38, 81, 121, 131, 218, 430, 508, 679, 1469
DriI	GACNNNNNGTC	1 cut(s)	1241
EaeI	YGGCCR	1 cut(s)	498
Eam1105I	GACNNNNNGTC	1 cut(s)	1241
Eco130I	CCWWGG	1 cut(s)	512
Eco47I	GGWCC	2 cut(s)	245, 1433
Eco57I	CTGAAG	2 cut(s)	432, 688
Eco91I	GGTNACC	1 cut(s)	1138
EcoO109I	RGGNCCY	3 cut(s)	245, 537, 1433
EcoO65I	GGTNACC	1 cut(s)	1138
EcoRII	CCWGG	4 cut(s)	211, 528, 692, 1424
EcoT14I	CCWWGG	1 cut(s)	512
EcoT22I	ATGCAT	1 cut(s)	356
ErhI	CCWWGG	1 cut(s)	512
Esp3I	CGTCTC	1 cut(s)	616
FaeI	CATG	3 cut(s)	311, 1138, 1490
FaqI	GGGAC	4 cut(s)	74, 258, 288, 1419
FatI	CATG	3 cut(s)	307, 1134, 1486
FauI	CCCGC	6 cut(s)	940, 970, 1000, 1030, 1060, 1090
FauNDI	CATATG	1 cut(s)	555
FokI	GGATG	4 cut(s)	415, 649, 1162, 1432
FspBI	CTAG	3 cut(s)	1221, 1371, 1473
GlaI	GCGC	1 cut(s)	1163
GsaI	CCCAGC	4 cut(s)	785, 815, 845, 875
GsuI	CTGGAG	6 cut(s)	407, 525, 738, 1224, 1234, 1318
HaeIII	GGCC	2 cut(s)	500, 539
HapII	CCGG	3 cut(s)	90, 129, 1353
HhaI	GCGC	1 cut(s)	1164
Hin1II	CATG	3 cut(s)	311, 1138, 1490
Hin6I	GCGC	1 cut(s)	1162
HinP1I	GCGC	1 cut(s)	1162
HinfI	GANTC	3 cut(s)	52, 569, 1270
HpaII	CCGG	3 cut(s)	90, 129, 1353
HphI	GGTGA	2 cut(s)	323, 752
Hpy166II	GTNNAC	8 cut(s)	392, 483, 1195, 1246, 1262, 1358, 1376, 1394
Hpy188I	TCNGA	2 cut(s)	51, 568
Hpy188III	TCNNGA	8 cut(s)	129, 400, 410, 424, 587, 717, 1467, 1521
Hpy8I	GTNNAC	8 cut(s)	392, 483, 1195, 1246, 1262, 1358, 1376, 1394
HpyAV	CCTTC	3 cut(s)	235, 421, 428
HpyCH4III	ACNGT	4 cut(s)	487, 730, 1313, 1391
HpyCH4IV	ACGT	2 cut(s)	771, 1210
HpyCH4V	TGCA	8 cut(s)	354, 365, 392, 436, 444, 483, 634, 662
HpyF10VI	GCNNNNNNNGC	3 cut(s)	746, 1018, 1226
HpyF3I	CTNAG	2 cut(s)	1198, 1382
HpySE526I	ACGT	2 cut(s)	771, 1210
Hsp92II	CATG	3 cut(s)	311, 1138, 1490
HspAI	GCGC	1 cut(s)	1162
KflI	GGGWCCC	1 cut(s)	1433
Kpn2I	TCCGGA	1 cut(s)	128
KpnI	GGTACC	1 cut(s)	1461
Kzo9I	GATC	9 cut(s)	38, 81, 121, 131, 218, 430, 508, 679, 1469
LweI	GCATC	4 cut(s)	331, 341, 665, 671
MabI	ACCWGGT	1 cut(s)	1424
MaeI	CTAG	3 cut(s)	1221, 1371, 1473
MaeII	ACGT	2 cut(s)	771, 1210
MalI	GATC	9 cut(s)	40, 83, 123, 133, 220, 432, 510, 681, 1471
MboI	GATC	9 cut(s)	38, 81, 121, 131, 218, 430, 508, 679, 1469
MboII	GAAGA	3 cut(s)	100, 191, 591
MflI	RGATCY	6 cut(s)	38, 218, 430, 508, 679, 1469
MhlI	GDGCHC	2 cut(s)	394, 485
MluCI	AATT	6 cut(s)	439, 523, 582, 614, 646, 1294
MluI	ACGCGT	4 cut(s)	1069, 1099, 1186, 1396
MlyI	GAGTC	1 cut(s)	1279
MmeI	TCCRAC	2 cut(s)	180, 715
Mph1103I	ATGCAT	1 cut(s)	356
MroI	TCCGGA	1 cut(s)	128
MroXI	GAANNNNTTC	2 cut(s)	207, 417
MseI	TTAA	2 cut(s)	318, 357
MspI	CCGG	3 cut(s)	90, 129, 1353
MspR9I	CCNGG	4 cut(s)	213, 530, 694, 1426
MvaI	CCWGG	4 cut(s)	213, 530, 694, 1426
MvnI	CGCG	4 cut(s)	1071, 1101, 1188, 1398
MwoI	GCNNNNNNNGC	3 cut(s)	746, 1018, 1226
NdeI	CATATG	1 cut(s)	555
NdeII	GATC	9 cut(s)	38, 81, 121, 131, 218, 430, 508, 679, 1469
NlaIII	CATG	3 cut(s)	311, 1138, 1490
NmuCI	GTSAC	2 cut(s)	10, 311
NsiI	ATGCAT	1 cut(s)	356
NspI	RCATGY	1 cut(s)	1490
PciI	ACATGT	1 cut(s)	1486
PdmI	GAANNNNTTC	2 cut(s)	207, 417
PfeI	GAWTC	2 cut(s)	52, 569
PflFI	GACNNNGTC	1 cut(s)	627
PleI	GAGTC	1 cut(s)	1278
PpsI	GAGTC	1 cut(s)	1278
Ppu21I	YACGTR	1 cut(s)	772
PpuMI	RGGWCCY	2 cut(s)	245, 1433
PscI	ACATGT	1 cut(s)	1486
Psp5II	RGGWCCY	2 cut(s)	245, 1433
Psp6I	CCWGG	4 cut(s)	211, 528, 692, 1424
PspEI	GGTNACC	1 cut(s)	1138
PspFI	CCCAGC	4 cut(s)	781, 811, 841, 871
PspGI	CCWGG	4 cut(s)	211, 528, 692, 1424
PspPI	GGNCC	3 cut(s)	245, 537, 1433
PspPPI	RGGWCCY	2 cut(s)	245, 1433
PstNI	CAGNNNCTG	1 cut(s)	572
PsuI	RGATCY	6 cut(s)	38, 218, 430, 508, 679, 1469
PsyI	GACNNNGTC	1 cut(s)	627
PvuII	CAGCTG	5 cut(s)	265, 785, 815, 845, 875
RsaI	GTAC	4 cut(s)	727, 1357, 1423, 1459
RsaNI	GTAC	4 cut(s)	726, 1356, 1422, 1458
SaqAI	TTAA	2 cut(s)	318, 357
Sau3AI	GATC	9 cut(s)	38, 81, 121, 131, 218, 430, 508, 679, 1469
Sau96I	GGNCC	3 cut(s)	245, 537, 1433
SchI	GAGTC	1 cut(s)	1279
ScrFI	CCNGG	4 cut(s)	213, 530, 694, 1426
SduI	GDGCHC	2 cut(s)	394, 485
SexAI	ACCWGGT	1 cut(s)	1424
SfaNI	GCATC	4 cut(s)	331, 341, 665, 671
SinI	GGWCC	2 cut(s)	245, 1433
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
Sse9I	AATT	6 cut(s)	439, 523, 582, 614, 646, 1294
SsiI	CCGC	8 cut(s)	167, 501, 933, 963, 993, 1023, 1053, 1083
SspI	AATATT	2 cut(s)	158, 284
SspMI	CTAG	3 cut(s)	1221, 1371, 1473
StyD4I	CCNGG	4 cut(s)	211, 528, 692, 1424
StyI	CCWWGG	1 cut(s)	512
TaaI	ACNGT	4 cut(s)	487, 730, 1313, 1391
TaiI	ACGT	2 cut(s)	774, 1213
TaqI	TCGA	2 cut(s)	55, 252
TasI	AATT	6 cut(s)	439, 523, 582, 614, 646, 1294
TauI	GCSGC	1 cut(s)	503
TfiI	GAWTC	2 cut(s)	52, 569
Tru1I	TTAA	2 cut(s)	318, 357
Tru9I	TTAA	2 cut(s)	318, 357
TscAI	CASTG	3 cut(s)	490, 1119, 1383
TseFI	GTSAC	2 cut(s)	10, 311
Tsp45I	GTSAC	2 cut(s)	10, 311
TspDTI	ATGAA	4 cut(s)	17, 254, 676, 1305
TspRI	CASTG	3 cut(s)	490, 1119, 1383
Tth111I	GACNNNGTC	1 cut(s)	627
VneI	GTGCAC	2 cut(s)	390, 481
VpaK11BI	GGWCC	2 cut(s)	245, 1433
XapI	RAATTY	1 cut(s)	646
XceI	RCATGY	1 cut(s)	1490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1132
XmnI	GAANNNNTTC	2 cut(s)	207, 417
XspI	CTAG	3 cut(s)	1221, 1371, 1473
Zsp2I	ATGCAT	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.