Rh3BG095500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0014799
Physical Location & Seq
Forward (+)
7647950 .. 7649089
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG095500.1

Sequence Viewer

Length: 261 bp
ATGGCTTTTCTCTTTCCTCTGTTTACCTTTCACGAATTTATAGTTGATCACCCCACCTGTTCATATGAATTGGCAGCCAGATTAAACAAAATTACATACTTTCCAGGCTCAGAAATCATTGATGTTGAACAGCAGCAGAGGAGCAATGGTGACAGCTTTTTCGATATTGAAGAGCTCCTGCAGATTGGGACCAAATGCAGAGGGTATTATGGCTTGAGAGAGATTTTGGACCGTGAGTTCCTGAAACAAAAGGCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

10.1

Weight (kDa)

5.02

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 35
AgsI TTSAA 2 cut(s) 128, 170
AjnI CCWGG 1 cut(s) 103
AloI GAACNNNNNNTCC 2 cut(s) 221, 253
AluBI AGCT 2 cut(s) 156, 175
AluI AGCT 2 cut(s) 156, 175
Alw21I GWGCWC 1 cut(s) 177
ApeKI GCWGC 2 cut(s) 74, 133
ApoI RAATTY 1 cut(s) 35
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
AspS9I GGNCC 2 cut(s) 189, 229
AsuHPI GGTGA 2 cut(s) 41, 161
AvaII GGWCC 2 cut(s) 189, 229
BanII GRGCYC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 2 cut(s) 86, 145
BciT130I CCWGG 1 cut(s) 105
BclI TGATCA 1 cut(s) 46
BfmI CTRYAG 1 cut(s) 179
BisI GCNGC 2 cut(s) 75, 134
BlsI GCNGC 2 cut(s) 76, 135
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 2 cut(s) 189, 229
BmgT120I GGNCC 2 cut(s) 189, 229
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 235
BsaXI ACNNNNNCTCC 2 cut(s) 133, 163
Bse3DI GCAATG 1 cut(s) 151
BseBI CCWGG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 154
BseXI GCAGC 2 cut(s) 86, 145
BsiHKAI GWGCWC 1 cut(s) 177
BslFI GGGAC 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 1 cut(s) 46
BspCNI CTCAG 1 cut(s) 122
BspLI GGNNCC 1 cut(s) 190
BspMAI CTGCAG 1 cut(s) 183
BspQI GCTCTTC 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 151
BssMI GATC 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 233
Bst6I CTCTTC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 109
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 179
BstV1I GCAGC 2 cut(s) 86, 145
Cfr13I GGNCC 2 cut(s) 189, 229
CviJI RGCY 7 cut(s) 5, 77, 108, 156, 175, 213, 254
CviKI_1 RGCY 7 cut(s) 5, 77, 108, 156, 175, 213, 254
DdeI CTNAG 1 cut(s) 109
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Ecl136II GAGCTC 1 cut(s) 175
Eco24I GRGCYC 1 cut(s) 177
Eco47I GGWCC 2 cut(s) 189, 229
Eco53kI GAGCTC 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 177
FaiI YATR 5 cut(s) 41, 64, 66, 97, 210
FaqI GGGAC 1 cut(s) 202
FauNDI CATATG 1 cut(s) 64
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 75, 134
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 2 cut(s) 75, 134
GluI GCNGC 2 cut(s) 75, 134
HphI GGTGA 2 cut(s) 41, 161
Hpy166II GTNNAC 1 cut(s) 24
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 2 cut(s) 32, 241
Hpy8I GTNNAC 1 cut(s) 24
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 2 cut(s) 181, 198
HpyF3I CTNAG 1 cut(s) 109
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 1 cut(s) 46
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 2 cut(s) 141, 180
LpnPI CCDG 6 cut(s) 70, 90, 91, 117, 191, 254
Lsp1109I GCAGC 2 cut(s) 86, 145
MaeIII GTNAC 1 cut(s) 149
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 3 cut(s) 35, 68, 90
MnlI CCTC 3 cut(s) 27, 132, 194
MseI TTAA 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
NdeI CATATG 1 cut(s) 64
NdeII GATC 1 cut(s) 46
NlaIV GGNNCC 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 149
PciSI GCTCTTC 1 cut(s) 165
PkrI GCNGC 2 cut(s) 76, 135
Psp124BI GAGCTC 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 2 cut(s) 189, 229
PstI CTGCAG 1 cut(s) 183
SacI GAGCTC 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 83
SatI GCNGC 2 cut(s) 75, 134
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 2 cut(s) 189, 229
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 1 cut(s) 177
SetI ASST 4 cut(s) 29, 59, 158, 177
SfcI CTRYAG 1 cut(s) 179
SgeI CNNG 9 cut(s) 44, 69, 90, 116, 117, 190, 226, 245, 253
SinI GGWCC 2 cut(s) 189, 229
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
Sse9I AATT 3 cut(s) 35, 68, 90
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 233
TaqI TCGA 1 cut(s) 162
TasI AATT 3 cut(s) 35, 68, 90
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TseFI GTSAC 1 cut(s) 149
TseI GCWGC 2 cut(s) 74, 133
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 2 cut(s) 51, 81
VpaK11BI GGWCC 2 cut(s) 189, 229
XapI RAATTY 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.