Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013163

Physical Location & Seq

Genomic Coordinates Reverse (-)

12222662 .. 12226610

Gene Structure 3949 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13650.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCGGCAGCCTCCATGGTATTCACCGACTGCTCCTCCCCCGCCGCCGCTCGCCTCATCCAACGAACCACCCCTCTCCTCCTTCGCACCGCCCAAAACGCCGTCGTTTTCCCTCGCCGCCTTCTCAACCCTCCCAGAAGCCTCTCAATCCACTCCTCCTCTTCCTCACCCTCCCAATTGTCCTCCGTGAATAAAAGGCTTGATGGGAAGAAGGTAGCGGAGAAGATTAGAGGGGAGATAGCTGAGGAAGTGTTGAGGATGAAGGATGCAATTGGGGTTGTTCCGGGTTTAGCGGTTATTTTGGTTGGAGATAGGGAGGAATCGGCTACTTATGTTAGTAAGAAGAAGGAGGCTTGTGAGGTTGTGGGGATTACTTCTTTTGAAGTGCATTTGCCGGAGAATGCCACAGAACAGCAAGTGCTTGAGGCCATCTCTGGCTTCAATGAGGATCCCGCGGTTCATGGGATCCTTGTTCAGCTACCTCTGCCTAGGCATATGGATGAACAAAACATCTTAAATGCTGTTAGCATTGAGAAAGATGTGGATGGATTTCATCCACTAAACATTGGCTGTCTTGCCATGCGTGGTAGAGAACCCTTCTTTGTTCCCTGTACTCCCAAAGGCTGCATAGAGTTGTTGCACAGATATGACATCCCTATCAAAGGAAAGAGAGCTGTTGTAATTGGCCGGAGCAATATTGTTGGGATGCCAGTCGCCTTGTTGCTGCAGAGGGAAGATGCTACAGTGAGCATAGTCCATTCCCGAACCAAGAATCCTGAGGAGTTAATAAAACAGGCAGACATTGTAATCGCAGCTGTAGGGCAAGCAAATATGGTGAAGGGTAGCTGGGTTAAACCTGGTGCAGTAGTTATTGATGTCGGAATCAATCCAATTGAGGATAAAACGAAGCGTTCTGGATTTCGGCTAGTTGGAGATGTCTGTTATAAGGAGGCCAAAGAAATTGCTTCAGCTATTACTCCAGTACCAGGAGGAGTTGGTCCAATGACTATAGCAATGCTTCTCACTAATACACTCATATCAGCAAAAAGGATACACAACTTCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004477 GO:0004488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006730 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016491 GO:0016645 GO:0016646 GO:0016787 GO:0016810 GO:0016814 GO:0019238 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

356

Amino Acids

38.39

Weight (kDa)

8.84

Isoelectric Point (pI)

51.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THF_DHG_CYH	PF00763	77 - 192	3.2e-42	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
THF_DHG_CYH_C	PF02882	213 - 360	3.4e-62	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00600 AT4G00620
fragaria_vesca	FvH4_7g13650 FvH4_7g13650
malus_domestica	MD07G1141500.v1.1 MD08G1243500.v1.1
prunus_persica	Prupe.2G162600_v2.0.a1
pyrus_communis	pycom07g14040 pycom08g21120
rosa_chinensis	RchiOBHm_Chr1g0353731
rosa_laevigata	RLG00000028263
rosa_roxburghii	Rroxscaffold_4G00301710
rosa_rugosa	Rorug01G0237200
rosa_samantha	Rh1AG249400 Rh1BG219500 Rh1CG232100 Rh1DG246500
rosa_wichuraiana	Rw1G021760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	945
AccBSI	CCGCTC	1 cut(s)	50
AccII	CGCG	1 cut(s)	455
AclWI	GGATC	4 cut(s)	443, 456, 460, 473
AcoI	YGGCCR	1 cut(s)	685
AcuI	CTGAAG	1 cut(s)	951
AfaI	GTAC	2 cut(s)	613, 984
AfiI	CCNNNNNNNGG	2 cut(s)	662, 986
AgsI	TTSAA	2 cut(s)	383, 442
AjnI	CCWGG	2 cut(s)	856, 985
AloI	GAACNNNNNNTCC	2 cut(s)	757, 789
AluBI	AGCT	6 cut(s)	242, 478, 674, 815, 846, 971
AluI	AGCT	6 cut(s)	242, 478, 674, 815, 846, 971
AlwI	GGATC	4 cut(s)	443, 456, 460, 473
AoxI	GGCC	3 cut(s)	426, 685, 951
ApeKI	GCWGC	4 cut(s)	8, 624, 724, 812
AspA2I	CCTAGG	1 cut(s)	488
AspS9I	GGNCC	1 cut(s)	998
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	3 cut(s)	16, 159, 847
AvaII	GGWCC	1 cut(s)	998
AvrII	CCTAGG	1 cut(s)	488
AxyI	CCTNAGG	1 cut(s)	777
BaeI	ACNNNNGTAYC	2 cut(s)	966, 999
BamHI	GGATCC	2 cut(s)	448, 465
BbvCI	CCTCAGC	1 cut(s)	243
BbvI	GCAGC	4 cut(s)	20, 611, 711, 824
BccI	CCATC	3 cut(s)	197, 437, 539
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	2 cut(s)	858, 987
BciVI	GTATCC	1 cut(s)	1044
BcnI	CCSGG	1 cut(s)	285
BfaI	CTAG	2 cut(s)	489, 926
BfmI	CTRYAG	4 cut(s)	725, 741, 816, 1008
BfuI	GTATCC	1 cut(s)	1044
BisI	GCNGC	8 cut(s)	6, 9, 45, 48, 118, 625, 725, 813
BlnI	CCTAGG	1 cut(s)	488
BlsI	GCNGC	8 cut(s)	7, 10, 46, 49, 119, 626, 726, 814
Bme1390I	CCNGG	3 cut(s)	285, 858, 987
Bme18I	GGWCC	1 cut(s)	998
BmgT120I	GGNCC	1 cut(s)	998
BmiI	GGNNCC	2 cut(s)	450, 467
BmrFI	CCNGG	3 cut(s)	285, 858, 987
BmsI	GCATC	3 cut(s)	256, 696, 727
BplI	GAGNNNNNCTC	2 cut(s)	416, 448
BpmI	CTGGAG	1 cut(s)	963
Bpu10I	CCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	285
BsaJI	CCNNGG	3 cut(s)	15, 453, 488
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	2 cut(s)	662, 986
Bse1I	ACTGG	3 cut(s)	710, 980, 1063
Bse21I	CCTNAGG	1 cut(s)	777
Bse3DI	GCAATG	1 cut(s)	1020
BseBI	CCWGG	2 cut(s)	858, 987
BseDI	CCNNGG	3 cut(s)	15, 453, 488
BseGI	GGATG	8 cut(s)	57, 264, 271, 505, 550, 553, 651, 711
BseLI	CCNNNNNNNGG	2 cut(s)	662, 986
BseMI	GCAATG	1 cut(s)	1020
BseMII	CTCAG	2 cut(s)	234, 768
BseNI	ACTGG	3 cut(s)	710, 980, 1063
BseRI	GAGGAG	6 cut(s)	25, 68, 145, 148, 794, 1005
BseXI	GCAGC	4 cut(s)	20, 611, 711, 824
BseYI	CCCAGC	1 cut(s)	846
BsgI	GTGCAG	1 cut(s)	882
Bsh1236I	CGCG	1 cut(s)	455
BshFI	GGCC	3 cut(s)	428, 687, 953
BsiSI	CCGG	3 cut(s)	284, 395, 688
BslI	CCNNNNNNNGG	2 cut(s)	662, 986
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	3 cut(s)	428, 687, 953
Bsp143I	GATC	2 cut(s)	448, 465
Bsp19I	CCATGG	1 cut(s)	15
BspANI	GGCC	3 cut(s)	428, 687, 953
BspCNI	CTCAG	2 cut(s)	235, 769
BspFNI	CGCG	1 cut(s)	455
BspLI	GGNNCC	2 cut(s)	450, 467
BspMAI	CTGCAG	1 cut(s)	729
BspPI	GGATC	4 cut(s)	443, 456, 460, 473
BsrBI	CCGCTC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	1020
BsrI	ACTGG	3 cut(s)	710, 980, 1063
BssECI	CCNNGG	3 cut(s)	15, 453, 488
BssMI	GATC	2 cut(s)	448, 465
BssT1I	CCWWGG	2 cut(s)	15, 488
Bst2UI	CCWGG	2 cut(s)	858, 987
Bst4CI	ACNGT	1 cut(s)	745
Bst6I	CTCTTC	1 cut(s)	166
BstC8I	GCNNGC	2 cut(s)	52, 825
BstDEI	CTNAG	2 cut(s)	243, 777
BstDSI	CCRYGG	2 cut(s)	15, 453
BstENI	CCTNNNNNAGG	1 cut(s)	660
BstF5I	GGATG	8 cut(s)	57, 264, 271, 505, 550, 553, 651, 711
BstFNI	CGCG	1 cut(s)	455
BstKTI	GATC	2 cut(s)	451, 468
BstMBI	GATC	2 cut(s)	448, 465
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 484
BstNI	CCWGG	2 cut(s)	858, 987
BstSCI	CCNGG	3 cut(s)	283, 856, 985
BstSFI	CTRYAG	4 cut(s)	725, 741, 816, 1008
BstUI	CGCG	1 cut(s)	455
BstV1I	GCAGC	4 cut(s)	20, 611, 711, 824
BstX2I	RGATCY	2 cut(s)	448, 465
BstYI	RGATCY	2 cut(s)	448, 465
Bsu36I	CCTNAGG	1 cut(s)	777
BsuI	GTATCC	1 cut(s)	1044
BsuRI	GGCC	3 cut(s)	428, 687, 953
BtgI	CCRYGG	2 cut(s)	15, 453
BtsCI	GGATG	8 cut(s)	57, 264, 271, 505, 550, 553, 651, 711
BtsIMutI	CAGTG	1 cut(s)	750
Cac8I	GCNNGC	2 cut(s)	52, 825
Cfr13I	GGNCC	1 cut(s)	998
Cfr42I	CCGCGG	1 cut(s)	456
CsiI	ACCWGGT	1 cut(s)	856
Csp6I	GTAC	2 cut(s)	612, 983
CviAII	CATG	3 cut(s)	16, 461, 580
CviQI	GTAC	2 cut(s)	612, 983
DdeI	CTNAG	2 cut(s)	243, 777
DpnI	GATC	2 cut(s)	450, 467
DpnII	GATC	2 cut(s)	448, 465
EaeI	YGGCCR	1 cut(s)	685
Eam1104I	CTCTTC	1 cut(s)	166
EarI	CTCTTC	1 cut(s)	166
Eco130I	CCWWGG	2 cut(s)	15, 488
Eco47I	GGWCC	1 cut(s)	998
Eco57I	CTGAAG	1 cut(s)	951
Eco81I	CCTNAGG	1 cut(s)	777
EcoNI	CCTNNNNNAGG	1 cut(s)	660
EcoRII	CCWGG	2 cut(s)	856, 985
EcoT14I	CCWWGG	2 cut(s)	15, 488
ErhI	CCWWGG	2 cut(s)	15, 488
FaeI	CATG	3 cut(s)	19, 464, 583
FatI	CATG	3 cut(s)	15, 460, 579
FauI	CCCGC	2 cut(s)	49, 460
FauNDI	CATATG	1 cut(s)	495
Fnu4HI	GCNGC	8 cut(s)	6, 9, 45, 48, 118, 625, 725, 813
FokI	GGATG	8 cut(s)	44, 271, 278, 512, 540, 557, 638, 718
Fsp4HI	GCNGC	8 cut(s)	6, 9, 45, 48, 118, 625, 725, 813
FspBI	CTAG	2 cut(s)	489, 926
GluI	GCNGC	8 cut(s)	6, 9, 45, 48, 118, 625, 725, 813
GsaI	CCCAGC	1 cut(s)	850
GsuI	CTGGAG	1 cut(s)	963
HaeIII	GGCC	3 cut(s)	428, 687, 953
HapII	CCGG	3 cut(s)	284, 395, 688
Hin1II	CATG	3 cut(s)	19, 464, 583
HinfI	GANTC	3 cut(s)	320, 772, 882
HpaII	CCGG	3 cut(s)	284, 395, 688
HphI	GGTGA	3 cut(s)	16, 159, 847
Hpy188I	TCNGA	1 cut(s)	881
Hpy188III	TCNNGA	3 cut(s)	762, 776, 915
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	7 cut(s)	92, 131, 205, 256, 340, 607, 832
HpyCH4III	ACNGT	1 cut(s)	745
HpyCH4V	TGCA	6 cut(s)	269, 388, 627, 640, 727, 863
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 484
HpyF3I	CTNAG	2 cut(s)	243, 777
Hsp92II	CATG	3 cut(s)	19, 464, 583
KspI	CCGCGG	1 cut(s)	456
Kzo9I	GATC	2 cut(s)	448, 465
LmnI	GCTCC	2 cut(s)	38, 690
Lsp1109I	GCAGC	4 cut(s)	20, 611, 711, 824
LweI	GCATC	3 cut(s)	256, 696, 727
MabI	ACCWGGT	1 cut(s)	856
MaeI	CTAG	2 cut(s)	489, 926
MalI	GATC	2 cut(s)	450, 467
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	2 cut(s)	448, 465
MboII	GAAGA	5 cut(s)	153, 220, 235, 355, 746
MfeI	CAATTG	3 cut(s)	176, 270, 891
MflI	RGATCY	2 cut(s)	448, 465
MluCI	AATT	5 cut(s)	176, 270, 681, 891, 960
MmeI	TCCRAC	4 cut(s)	85, 286, 859, 910
MseI	TTAA	3 cut(s)	515, 785, 852
MslI	CAYNNNNRTG	2 cut(s)	498, 645
MspA1I	CMGCKG	2 cut(s)	455, 815
MspI	CCGG	3 cut(s)	284, 395, 688
MspR9I	CCNGG	3 cut(s)	285, 858, 987
MunI	CAATTG	3 cut(s)	176, 270, 891
Mva1269I	GAATGC	1 cut(s)	406
MvaI	CCWGG	2 cut(s)	858, 987
MvnI	CGCG	1 cut(s)	455
MwoI	GCNNNNNNNGC	2 cut(s)	98, 484
NciI	CCSGG	1 cut(s)	285
NcoI	CCATGG	1 cut(s)	15
NdeI	CATATG	1 cut(s)	495
NdeII	GATC	2 cut(s)	448, 465
NlaIII	CATG	3 cut(s)	19, 464, 583
NlaIV	GGNNCC	2 cut(s)	450, 467
PctI	GAATGC	1 cut(s)	406
PfeI	GAWTC	3 cut(s)	320, 772, 882
PkrI	GCNGC	8 cut(s)	7, 10, 46, 49, 119, 626, 726, 814
PsiI	TTATAA	1 cut(s)	945
Psp6I	CCWGG	2 cut(s)	856, 985
PspFI	CCCAGC	1 cut(s)	846
PspGI	CCWGG	2 cut(s)	856, 985
PspN4I	GGNNCC	2 cut(s)	450, 467
PspPI	GGNCC	1 cut(s)	998
PstI	CTGCAG	1 cut(s)	729
PsuI	RGATCY	2 cut(s)	448, 465
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	2 cut(s)	613, 984
RsaNI	GTAC	2 cut(s)	612, 983
RseI	CAYNNNNRTG	2 cut(s)	498, 645
SacII	CCGCGG	1 cut(s)	456
SaqAI	TTAA	3 cut(s)	515, 785, 852
SatI	GCNGC	8 cut(s)	6, 9, 45, 48, 118, 625, 725, 813
Sau3AI	GATC	2 cut(s)	448, 465
Sau96I	GGNCC	1 cut(s)	998
ScrFI	CCNGG	3 cut(s)	285, 858, 987
SexAI	ACCWGGT	1 cut(s)	856
SfaNI	GCATC	3 cut(s)	256, 696, 727
SfcI	CTRYAG	4 cut(s)	725, 741, 816, 1008
Sfr303I	CCGCGG	1 cut(s)	456
SgrBI	CCGCGG	1 cut(s)	456
SinI	GGWCC	1 cut(s)	998
SmiMI	CAYNNNNRTG	2 cut(s)	498, 645
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	5 cut(s)	176, 270, 681, 891, 960
SspI	AATATT	1 cut(s)	697
SspMI	CTAG	2 cut(s)	489, 926
StyD4I	CCNGG	3 cut(s)	283, 856, 985
StyI	CCWWGG	2 cut(s)	15, 488
TaaI	ACNGT	1 cut(s)	745
TasI	AATT	5 cut(s)	176, 270, 681, 891, 960
TatI	WGTACW	1 cut(s)	611
TauI	GCSGC	4 cut(s)	8, 47, 50, 120
TfiI	GAWTC	3 cut(s)	320, 772, 882
Tru1I	TTAA	3 cut(s)	515, 785, 852
Tru9I	TTAA	3 cut(s)	515, 785, 852
TscAI	CASTG	1 cut(s)	750
TseI	GCWGC	4 cut(s)	8, 624, 724, 812
TspDTI	ATGAA	4 cut(s)	275, 449, 516, 542
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	1 cut(s)	750
VpaK11BI	GGWCC	1 cut(s)	998
XagI	CCTNNNNNAGG	1 cut(s)	660
XmaJI	CCTAGG	1 cut(s)	488
XspI	CTAG	2 cut(s)	489, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.