Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0013163

Physical Location & Seq

Genomic Coordinates Reverse (-)

33931570 .. 33934372

Gene Structure 2803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG219500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCGGCAGCGTCGATGGTATTCACGGACTGCTCCTCCACCACCGCCGCCGCCGCTCGCCTCCTCCCCTTCACACGTACCACCCCTCTCCTCCTCCGCACCACCCAATACGCCGTCGTTTTCCCTCGCCGCCTCATCCACCCTCCCAGAACCCTCTCAATCCACTCCTCTTCTTCTTCCCCCTCCCAATTGTCCACCGCTTCAATTGTTTCCCAAAATGAGAAGCACGAAAAATCGGTTACGAAACTGGAAATAGTGAATAAAAGGCTTGATGGGAAGAAAGTGGCAGAGAAAATTAGAGGGGAGATAGCTGAGGAAGTGTCAAGGATGAAGGATGCAATTGGGTTTGTTCCGGGTTTGGCTGTTATTTTGGTTGGAGATAGGGAAGAATCTGCCACTTATGTTAGCAAGAAGAAGGAGGCTTGTGAGGTTGTGGGGATTACTTCTTTTGAAGTGCATTTGCCGGAGGATGCCACGGAACAAGAAGTGCTCGACTCCATCTCCGGCTTCAATGAGGATCCCTCAGTTCATGGCATCCTTGTTCAGCTACCTCTGCCTAGGCATATGGATGAACAAAACATTTTAAATGCTGTTAGCATTGAGAAAGATGTGGATGGATTTCACCCGCTAAATATTGGCTGTCTTGCCATGCGAGGTAGGGAACCCTTCTTTGTTCCCTGTACTCCCAAAGGCTGCATAGAGCTGTTGCATAGATATGACATCCCTATCAAAGGAAAGAGAGCTGTTGTAATTGGCCGGAGCAATATTGTTGGGATGCCAGTTGCTTTGTTGCTGCAGAGGGAAGATGCTACAGTCAGCATAGTCCATTCCCGAACCAAGAATCCCGAAGAGTTAACAAAACAAGCAGATATTGTAATCGCAGCTGTAGGGCAAGCAAATATGGTGAGGGGTAGCTGGATTAAACCTGGTGCAGTAGTTATTGATGTCGGAATCAATCCAGTTGAGGATAAAACAAAGCGCTCGGGCTTTCGGCTAGTTGGAGATGTCTGTTATAAGGAGGCCAAAGAAATTGCTTCAGCAATTACTCCAGTACCAGGAGGAGTTGGTCCAATGACTATAGCAATGCTTCTCACTAATACACTCATATCAGCAAAAAGGATACACAACTTCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004477 GO:0004488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006730 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016491 GO:0016645 GO:0016646 GO:0016787 GO:0016810 GO:0016814 GO:0019238 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

378

Amino Acids

41.09

Weight (kDa)

8.45

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THF_DHG_CYH	PF00763	90 - 205	1.2e-42	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
THF_DHG_CYH_C	PF02882	226 - 373	2.6e-62	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00600 AT4G00620
fragaria_vesca	FvH4_7g13650 FvH4_7g13650
malus_domestica	MD07G1141500.v1.1 MD08G1243500.v1.1
prunus_persica	Prupe.2G162600_v2.0.a1
pyrus_communis	pycom07g14040 pycom08g21120
rosa_chinensis	RchiOBHm_Chr1g0353731
rosa_laevigata	RLG00000028263
rosa_roxburghii	Rroxscaffold_4G00301710
rosa_rugosa	Rorug01G0237200
rosa_samantha	Rh1AG249400 Rh1BG219500 Rh1CG232100 Rh1DG246500
rosa_wichuraiana	Rw1G021760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1014
AccBSI	CCGCTC	1 cut(s)	56
AciI	CCGC	9 cut(s)	5, 45, 48, 51, 54, 97, 130, 198, 626
AclWI	GGATC	2 cut(s)	512, 525
AcoI	YGGCCR	1 cut(s)	754
AcuI	CTGAAG	1 cut(s)	1020
AfaI	GTAC	3 cut(s)	79, 682, 1053
AfeI	AGCGCT	1 cut(s)	980
AfiI	CCNNNNNNNGG	2 cut(s)	731, 1055
AflIII	ACRYGT	1 cut(s)	74
AgsI	TTSAA	3 cut(s)	204, 452, 511
AjnI	CCWGG	2 cut(s)	925, 1054
AloI	GAACNNNNNNTCC	2 cut(s)	826, 858
AluBI	AGCT	6 cut(s)	311, 547, 703, 743, 884, 915
AluI	AGCT	6 cut(s)	311, 547, 703, 743, 884, 915
Alw21I	GWGCWC	1 cut(s)	492
AlwI	GGATC	2 cut(s)	512, 525
Ama87I	CYCGRG	1 cut(s)	982
Aor51HI	AGCGCT	1 cut(s)	980
AoxI	GGCC	2 cut(s)	754, 1020
ApeKI	GCWGC	4 cut(s)	8, 693, 793, 881
AspA2I	CCTAGG	1 cut(s)	557
AspLEI	GCGC	1 cut(s)	981
AspS9I	GGNCC	1 cut(s)	1067
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	2 cut(s)	614, 916
AvaI	CYCGRG	1 cut(s)	982
AvaII	GGWCC	1 cut(s)	1067
AvrII	CCTAGG	1 cut(s)	557
BaeI	ACNNNNGTAYC	2 cut(s)	1035, 1068
BamHI	GGATCC	1 cut(s)	517
Bbv12I	GWGCWC	1 cut(s)	492
BbvCI	CCTCAGC	1 cut(s)	312
BbvI	GCAGC	4 cut(s)	20, 680, 780, 893
BccI	CCATC	4 cut(s)	10, 266, 506, 608
BceAI	ACGGC	1 cut(s)	98
BciT130I	CCWGG	2 cut(s)	927, 1056
BciVI	GTATCC	1 cut(s)	1113
BcnI	CCSGG	1 cut(s)	354
BfaI	CTAG	2 cut(s)	558, 995
BfmI	CTRYAG	4 cut(s)	794, 810, 885, 1077
BfoI	RGCGCY	1 cut(s)	982
BfuI	GTATCC	1 cut(s)	1113
BisI	GCNGC	9 cut(s)	6, 9, 48, 51, 54, 130, 694, 794, 882
BlnI	CCTAGG	1 cut(s)	557
BlsI	GCNGC	9 cut(s)	7, 10, 49, 52, 55, 131, 695, 795, 883
Bme1390I	CCNGG	3 cut(s)	354, 927, 1056
Bme18I	GGWCC	1 cut(s)	1067
BmeT110I	CYCGRG	1 cut(s)	982
BmgT120I	GGNCC	1 cut(s)	1067
BmiI	GGNNCC	2 cut(s)	519, 663
BmrFI	CCNGG	3 cut(s)	354, 927, 1056
BmsI	GCATC	5 cut(s)	325, 460, 543, 765, 796
BplI	GAGNNNNNCTC	2 cut(s)	506, 538
BpmI	CTGGAG	1 cut(s)	1032
Bpu10I	CCTNAGC	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	354
BsaAI	YACGTR	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	474, 557
BsaXI	ACNNNNNCTCC	4 cut(s)	20, 50, 485, 515
Bsc4I	CCNNNNNNNGG	2 cut(s)	731, 1055
Bse1I	ACTGG	5 cut(s)	252, 779, 959, 1049, 1132
Bse3DI	GCAATG	1 cut(s)	1089
BseBI	CCWGG	2 cut(s)	927, 1056
BseDI	CCNNGG	2 cut(s)	474, 557
BseGI	GGATG	9 cut(s)	135, 333, 340, 475, 534, 574, 619, 720, 780
BseLI	CCNNNNNNNGG	2 cut(s)	731, 1055
BseMI	GCAATG	1 cut(s)	1089
BseMII	CTCAG	2 cut(s)	303, 537
BseNI	ACTGG	5 cut(s)	252, 779, 959, 1049, 1132
BseRI	GAGGAG	6 cut(s)	25, 53, 80, 83, 157, 1074
BseXI	GCAGC	4 cut(s)	20, 680, 780, 893
BsgI	GTGCAG	1 cut(s)	951
BshFI	GGCC	2 cut(s)	756, 1022
BsiHKAI	GWGCWC	1 cut(s)	492
BsiHKCI	CYCGRG	1 cut(s)	982
BsiSI	CCGG	4 cut(s)	353, 464, 504, 757
BslI	CCNNNNNNNGG	2 cut(s)	731, 1055
BsnI	GGCC	2 cut(s)	756, 1022
BsoBI	CYCGRG	1 cut(s)	982
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp143I	GATC	1 cut(s)	517
BspACI	CCGC	9 cut(s)	5, 45, 48, 51, 54, 97, 130, 198, 626
BspANI	GGCC	2 cut(s)	756, 1022
BspCNI	CTCAG	2 cut(s)	304, 536
BspLI	GGNNCC	2 cut(s)	519, 663
BspMAI	CTGCAG	1 cut(s)	798
BspPI	GGATC	2 cut(s)	512, 525
BsrBI	CCGCTC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	1089
BsrI	ACTGG	5 cut(s)	252, 779, 959, 1049, 1132
BssECI	CCNNGG	2 cut(s)	474, 557
BssMI	GATC	1 cut(s)	517
BssT1I	CCWWGG	1 cut(s)	557
Bst2UI	CCWGG	2 cut(s)	927, 1056
Bst4CI	ACNGT	1 cut(s)	814
Bst6I	CTCTTC	2 cut(s)	175, 843
BstBAI	YACGTR	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	58, 894
BstDEI	CTNAG	2 cut(s)	312, 523
BstDSI	CCRYGG	1 cut(s)	474
BstENI	CCTNNNNNAGG	1 cut(s)	729
BstF5I	GGATG	9 cut(s)	135, 333, 340, 475, 534, 574, 619, 720, 780
BstH2I	RGCGCY	1 cut(s)	982
BstHHI	GCGC	1 cut(s)	981
BstKTI	GATC	1 cut(s)	520
BstMBI	GATC	1 cut(s)	517
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 553
BstNI	CCWGG	2 cut(s)	927, 1056
BstSCI	CCNGG	3 cut(s)	352, 925, 1054
BstSFI	CTRYAG	4 cut(s)	794, 810, 885, 1077
BstV1I	GCAGC	4 cut(s)	20, 680, 780, 893
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuI	GTATCC	1 cut(s)	1113
BsuRI	GGCC	2 cut(s)	756, 1022
BtgI	CCRYGG	1 cut(s)	474
BtsCI	GGATG	9 cut(s)	135, 333, 340, 475, 534, 574, 619, 720, 780
Cac8I	GCNNGC	2 cut(s)	58, 894
CfoI	GCGC	1 cut(s)	981
Cfr13I	GGNCC	1 cut(s)	1067
CsiI	ACCWGGT	1 cut(s)	925
Csp6I	GTAC	3 cut(s)	78, 681, 1052
CviAII	CATG	2 cut(s)	530, 649
CviQI	GTAC	3 cut(s)	78, 681, 1052
DdeI	CTNAG	2 cut(s)	312, 523
DpnI	GATC	1 cut(s)	519
DpnII	GATC	1 cut(s)	517
DraI	TTTAAA	1 cut(s)	585
EaeI	YGGCCR	1 cut(s)	754
Eam1104I	CTCTTC	2 cut(s)	175, 843
EarI	CTCTTC	2 cut(s)	175, 843
Eco130I	CCWWGG	1 cut(s)	557
Eco47I	GGWCC	1 cut(s)	1067
Eco47III	AGCGCT	1 cut(s)	980
Eco57I	CTGAAG	1 cut(s)	1020
Eco88I	CYCGRG	1 cut(s)	982
EcoNI	CCTNNNNNAGG	1 cut(s)	729
EcoRII	CCWGG	2 cut(s)	925, 1054
EcoT14I	CCWWGG	1 cut(s)	557
ErhI	CCWWGG	1 cut(s)	557
FaeI	CATG	2 cut(s)	533, 652
FatI	CATG	2 cut(s)	529, 648
FauI	CCCGC	1 cut(s)	633
FauNDI	CATATG	1 cut(s)	564
Fnu4HI	GCNGC	9 cut(s)	6, 9, 48, 51, 54, 130, 694, 794, 882
FokI	GGATG	9 cut(s)	122, 340, 347, 482, 521, 581, 626, 707, 787
Fsp4HI	GCNGC	9 cut(s)	6, 9, 48, 51, 54, 130, 694, 794, 882
FspBI	CTAG	2 cut(s)	558, 995
GlaI	GCGC	1 cut(s)	980
GluI	GCNGC	9 cut(s)	6, 9, 48, 51, 54, 130, 694, 794, 882
GsuI	CTGGAG	1 cut(s)	1032
HaeII	RGCGCY	1 cut(s)	982
HaeIII	GGCC	2 cut(s)	756, 1022
HapII	CCGG	4 cut(s)	353, 464, 504, 757
HhaI	GCGC	1 cut(s)	981
Hin1II	CATG	2 cut(s)	533, 652
Hin6I	GCGC	1 cut(s)	979
HinP1I	GCGC	1 cut(s)	979
HincII	GTYRAC	1 cut(s)	855
HindII	GTYRAC	1 cut(s)	855
HinfI	GANTC	4 cut(s)	389, 494, 841, 951
HpaI	GTTAAC	1 cut(s)	855
HpaII	CCGG	4 cut(s)	353, 464, 504, 757
HphI	GGTGA	2 cut(s)	614, 916
Hpy166II	GTNNAC	2 cut(s)	195, 855
Hpy188I	TCNGA	1 cut(s)	950
Hpy188III	TCNNGA	2 cut(s)	831, 845
Hpy8I	GTNNAC	2 cut(s)	195, 855
Hpy99I	CGWCG	2 cut(s)	16, 119
HpyAV	CCTTC	4 cut(s)	79, 325, 409, 676
HpyCH4III	ACNGT	1 cut(s)	814
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	6 cut(s)	338, 457, 696, 709, 796, 932
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 553
HpyF3I	CTNAG	2 cut(s)	312, 523
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	2 cut(s)	533, 652
HspAI	GCGC	1 cut(s)	979
KspAI	GTTAAC	1 cut(s)	855
Kzo9I	GATC	1 cut(s)	517
LmnI	GCTCC	2 cut(s)	38, 759
Lsp1109I	GCAGC	4 cut(s)	20, 680, 780, 893
LweI	GCATC	5 cut(s)	325, 460, 543, 765, 796
MabI	ACCWGGT	1 cut(s)	925
MaeI	CTAG	2 cut(s)	558, 995
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	1 cut(s)	519
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	1 cut(s)	517
MboII	GAAGA	8 cut(s)	162, 165, 168, 289, 398, 424, 815, 860
MfeI	CAATTG	3 cut(s)	188, 204, 339
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	1 cut(s)	492
MluCI	AATT	7 cut(s)	188, 204, 294, 339, 750, 1029, 1041
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	3 cut(s)	355, 928, 979
MseI	TTAA	3 cut(s)	584, 854, 921
MslI	CAYNNNNRTG	2 cut(s)	567, 714
MspA1I	CMGCKG	1 cut(s)	884
MspI	CCGG	4 cut(s)	353, 464, 504, 757
MspR9I	CCNGG	3 cut(s)	354, 927, 1056
MunI	CAATTG	3 cut(s)	188, 204, 339
MvaI	CCWGG	2 cut(s)	927, 1056
MwoI	GCNNNNNNNGC	2 cut(s)	53, 553
NciI	CCSGG	1 cut(s)	354
NdeI	CATATG	1 cut(s)	564
NdeII	GATC	1 cut(s)	517
NlaIII	CATG	2 cut(s)	533, 652
NlaIV	GGNNCC	2 cut(s)	519, 663
PfeI	GAWTC	3 cut(s)	389, 841, 951
PkrI	GCNGC	9 cut(s)	7, 10, 49, 52, 55, 131, 695, 795, 883
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
Ppu21I	YACGTR	1 cut(s)	77
PsiI	TTATAA	1 cut(s)	1014
Psp6I	CCWGG	2 cut(s)	925, 1054
PspGI	CCWGG	2 cut(s)	925, 1054
PspN4I	GGNNCC	2 cut(s)	519, 663
PspPI	GGNCC	1 cut(s)	1067
PstI	CTGCAG	1 cut(s)	798
PsuI	RGATCY	1 cut(s)	517
PvuII	CAGCTG	1 cut(s)	884
RsaI	GTAC	3 cut(s)	79, 682, 1053
RsaNI	GTAC	3 cut(s)	78, 681, 1052
RseI	CAYNNNNRTG	2 cut(s)	567, 714
SaqAI	TTAA	3 cut(s)	584, 854, 921
SatI	GCNGC	9 cut(s)	6, 9, 48, 51, 54, 130, 694, 794, 882
Sau3AI	GATC	1 cut(s)	517
Sau96I	GGNCC	1 cut(s)	1067
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	3 cut(s)	354, 927, 1056
SduI	GDGCHC	1 cut(s)	492
SexAI	ACCWGGT	1 cut(s)	925
SfaNI	GCATC	5 cut(s)	325, 460, 543, 765, 796
SfcI	CTRYAG	4 cut(s)	794, 810, 885, 1077
SinI	GGWCC	1 cut(s)	1067
SmiMI	CAYNNNNRTG	2 cut(s)	567, 714
Sse9I	AATT	7 cut(s)	188, 204, 294, 339, 750, 1029, 1041
SsiI	CCGC	9 cut(s)	5, 45, 48, 51, 54, 97, 130, 198, 626
SspI	AATATT	2 cut(s)	634, 766
SspMI	CTAG	2 cut(s)	558, 995
StyD4I	CCNGG	3 cut(s)	352, 925, 1054
StyI	CCWWGG	1 cut(s)	557
TaaI	ACNGT	1 cut(s)	814
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	2 cut(s)	14, 492
TasI	AATT	7 cut(s)	188, 204, 294, 339, 750, 1029, 1041
TatI	WGTACW	1 cut(s)	680
TauI	GCSGC	5 cut(s)	8, 50, 53, 56, 132
TfiI	GAWTC	3 cut(s)	389, 841, 951
Tru1I	TTAA	3 cut(s)	584, 854, 921
Tru9I	TTAA	3 cut(s)	584, 854, 921
TseI	GCWGC	4 cut(s)	8, 693, 793, 881
TspDTI	ATGAA	3 cut(s)	344, 518, 585
TspGWI	ACGGA	2 cut(s)	41, 491
VpaK11BI	GGWCC	1 cut(s)	1067
XagI	CCTNNNNNAGG	1 cut(s)	729
XmaJI	CCTAGG	1 cut(s)	557
XspI	CTAG	2 cut(s)	558, 995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.