Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009623

Physical Location & Seq

Genomic Coordinates Forward (+)

12348032 .. 12351641

Gene Structure 3610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13850.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGCTCCTCATTAAATTTCACTCTGTCTTCCTGGGTGGAGAGAATCCCAACATTAATGCCTTGAGAGAGATGGGAAGGACTCCATGTTGTGACAAGGATGGGCTGAAGAGAGGTCCATGGACTCCTGATGAGGATGAGATTCTTGTCAATTACATCAACAAGAATAAGGGACATGGCAGCTGGAGATCTCTCCCACAGCATGCAGGCCTTCTTCGATGTGGTAAGAGTTGCCGACTCAGGTGGACAAATTATCTTAGACCAGACATTAAGCGTGGCCCATTTACTGAGGAAGAAGAGAAGCTAATCATTCAGCTCCATGGCATGCTTGGAAACAGGTGGGCTGCTATAGCATCTCAGTTACCTGGACGAACTGACAATGAGATCAAGAACTTATGGAACACGCACCTGAGGAAGCGCCTTATCCGCATGGGGATCAATCCACAAAATCACGAGCCCTTTACCCCTGACGGTTCAACTTCCAAAACATCAGCTTCCACCACGACACGCCACATGGCACAGTGGGAGAGTGCTAGGCTTGAAGCCGAGGCTAGGCTGTCAAGGGAGTCATCACAGTTCAGTACCCCATTTCTGGAGAAATCTGACTCGGACTACTTCCTGCGCTTATGGTACTCTGAGGTTGGAGAGTCATTCCGAAAGCTCCCCATAGCAGGTAAAACTCCATCTGATAGCCCCATCTCTGAGGCATCTTCTTCAGGGAAGTGTGGATCAATCTCGGCTGTAACAACAGAAATTGGCCATTGCTTTATGGGGTCGTCAACCATGGCAGCCACTCAAGATGAAGATGTAAAATACAAGGTTATCAAGTCCGTTACTGGTGAAGATATGATCTACAGGATTTACAAGTGCAACACTGAAAATGTGATGATACGCGGTTCTGACTCTTCAAGCTCCAACAAATTAGATGACTCATCAGAATCTGCAATGGATATGCTGCTGGATTACCCCATTAACAATGACATGAGCTTCTTAGAAGACGATATGAATGACTATGCAACAAGTACTTCGGCCAAGATAGAAAATGCCTTTTTTCCCCTCTCTGATTCAAAGCAGGCGTTCAAACTTCTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048580 GO:0048831 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

364

Amino Acids

40.85

Weight (kDa)

6.28

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 62	4.9e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	1.2e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 113	2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 117	8.6e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61250
fragaria_vesca	FvH4_7g13850 FvH4_7g13850 FvH4_7g13850 FvH4_7g13850 FvH4_7g13850
malus_domestica	MD01G1054800.v1.1 MD07G1140400.v1.1
prunus_persica	Prupe.2G164300_v2.0.a1 Prupe.2G164300_v2.0.a1
pyrus_communis	pycom01g08020 pycom07g13820
rosa_chinensis	RchiOBHm_Chr1g0354061
rosa_laevigata	RLG00000028230
rosa_multiflora	Rmu_sc0006777.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301260
rosa_rugosa	Rorug01G0240700
rosa_samantha	Rh1AG251900 Rh1BG223600 Rh1CG236200 Rh1DG250500
rosa_wichuraiana	Rw1G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	659
AccII	CGCG	1 cut(s)	891
AciI	CCGC	2 cut(s)	424, 891
AclWI	GGATC	2 cut(s)	440, 733
AcoI	YGGCCR	2 cut(s)	754, 1026
AcsI	RAATTY	1 cut(s)	14
AcuI	CTGAAG	2 cut(s)	125, 696
AfaI	GTAC	3 cut(s)	580, 629, 1021
AfiI	CCNNNNNNNGG	3 cut(s)	549, 589, 668
AgsI	TTSAA	5 cut(s)	474, 539, 906, 1065, 1078
AjnI	CCWGG	2 cut(s)	30, 361
AluBI	AGCT	7 cut(s)	180, 301, 313, 491, 658, 909, 984
AluI	AGCT	7 cut(s)	180, 301, 313, 491, 658, 909, 984
AlwI	GGATC	2 cut(s)	440, 733
AlwNI	CAGNNNCTG	1 cut(s)	938
AoxI	GGCC	4 cut(s)	205, 274, 754, 1026
ApeKI	GCWGC	4 cut(s)	177, 341, 785, 952
ApoI	RAATTY	1 cut(s)	14
AseI	ATTAAT	1 cut(s)	54
AspLEI	GCGC	2 cut(s)	417, 621
AspS9I	GGNCC	2 cut(s)	113, 275
AsuHPI	GGTGA	1 cut(s)	848
AvaII	GGWCC	1 cut(s)	113
AxyI	CCTNAGG	1 cut(s)	407
BalI	TGGCCA	1 cut(s)	756
BanII	GRGCYC	1 cut(s)	456
BauI	CACGAG	1 cut(s)	449
BbsI	GAAGAC	2 cut(s)	19, 999
BbvI	GCAGC	4 cut(s)	189, 328, 797, 939
BccI	CCATC	4 cut(s)	64, 92, 688, 701
BciT130I	CCWGG	2 cut(s)	32, 363
BfaI	CTAG	2 cut(s)	531, 549
BfmI	CTRYAG	2 cut(s)	345, 850
BfoI	RGCGCY	1 cut(s)	418
BfuAI	ACCTGC	1 cut(s)	659
BglII	AGATCT	1 cut(s)	185
BisI	GCNGC	4 cut(s)	178, 342, 786, 953
BlsI	GCNGC	4 cut(s)	179, 343, 787, 954
BmcAI	AGTACT	1 cut(s)	1021
Bme1390I	CCNGG	2 cut(s)	32, 363
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	2 cut(s)	113, 275
BmrFI	CCNGG	2 cut(s)	32, 363
BmsI	GCATC	2 cut(s)	359, 713
BpiI	GAAGAC	2 cut(s)	19, 999
BpmI	CTGGAG	2 cut(s)	202, 611
BpuEI	CTTGAG	2 cut(s)	82, 777
BsaJI	CCNNGG	5 cut(s)	31, 116, 316, 543, 780
Bsc4I	CCNNNNNNNGG	3 cut(s)	549, 589, 668
Bse1I	ACTGG	1 cut(s)	838
Bse21I	CCTNAGG	1 cut(s)	407
Bse3DI	GCAATG	2 cut(s)	757, 948
BseBI	CCWGG	2 cut(s)	32, 363
BseDI	CCNNGG	5 cut(s)	31, 116, 316, 543, 780
BseGI	GGATG	2 cut(s)	103, 139
BseLI	CCNNNNNNNGG	3 cut(s)	549, 589, 668
BseMI	GCAATG	2 cut(s)	757, 948
BseMII	CTCAG	6 cut(s)	250, 276, 368, 398, 624, 690
BseNI	ACTGG	1 cut(s)	838
BseXI	GCAGC	4 cut(s)	189, 328, 797, 939
Bsh1236I	CGCG	1 cut(s)	891
BshFI	GGCC	4 cut(s)	207, 276, 756, 1028
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	3 cut(s)	549, 589, 668
BsmFI	GGGAC	1 cut(s)	183
BsnI	GGCC	4 cut(s)	207, 276, 756, 1028
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	5 cut(s)	185, 381, 432, 725, 846
Bsp19I	CCATGG	3 cut(s)	116, 316, 780
BspACI	CCGC	2 cut(s)	424, 891
BspANI	GGCC	4 cut(s)	207, 276, 756, 1028
BspCNI	CTCAG	6 cut(s)	249, 277, 367, 399, 625, 691
BspFNI	CGCG	1 cut(s)	891
BspMI	ACCTGC	1 cut(s)	659
BspPI	GGATC	2 cut(s)	440, 733
BsrDI	GCAATG	2 cut(s)	757, 948
BsrI	ACTGG	1 cut(s)	838
BssECI	CCNNGG	5 cut(s)	31, 116, 316, 543, 780
BssMI	GATC	5 cut(s)	185, 381, 432, 725, 846
BssSI	CACGAG	1 cut(s)	449
BssT1I	CCWWGG	3 cut(s)	116, 316, 780
Bst2BI	CACGAG	1 cut(s)	449
Bst2UI	CCWGG	2 cut(s)	32, 363
Bst4CI	ACNGT	3 cut(s)	470, 519, 573
Bst6I	CTCTTC	3 cut(s)	101, 288, 907
BstC8I	GCNNGC	4 cut(s)	201, 205, 323, 1071
BstDEI	CTNAG	8 cut(s)	236, 254, 285, 354, 407, 633, 699, 988
BstDSI	CCRYGG	3 cut(s)	116, 316, 780
BstF5I	GGATG	2 cut(s)	103, 139
BstFNI	CGCG	1 cut(s)	891
BstH2I	RGCGCY	1 cut(s)	418
BstHHI	GCGC	2 cut(s)	417, 621
BstKTI	GATC	5 cut(s)	188, 384, 435, 728, 849
BstMBI	GATC	5 cut(s)	185, 381, 432, 725, 846
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 423
BstNI	CCWGG	2 cut(s)	32, 363
BstNSI	RCATGY	2 cut(s)	203, 325
BstSCI	CCNGG	2 cut(s)	30, 361
BstSFI	CTRYAG	2 cut(s)	345, 850
BstUI	CGCG	1 cut(s)	891
BstV1I	GCAGC	4 cut(s)	189, 328, 797, 939
BstV2I	GAAGAC	2 cut(s)	19, 999
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
Bsu36I	CCTNAGG	1 cut(s)	407
BsuRI	GGCC	4 cut(s)	207, 276, 756, 1028
BtgI	CCRYGG	3 cut(s)	116, 316, 780
BtsCI	GGATG	2 cut(s)	103, 139
BtsIMutI	CAGTG	2 cut(s)	524, 870
BveI	ACCTGC	1 cut(s)	659
Cac8I	GCNNGC	4 cut(s)	201, 205, 323, 1071
CaiI	CAGNNNCTG	1 cut(s)	938
CfoI	GCGC	2 cut(s)	417, 621
Cfr13I	GGNCC	2 cut(s)	113, 275
Csp6I	GTAC	3 cut(s)	579, 628, 1020
CviQI	GTAC	3 cut(s)	579, 628, 1020
DdeI	CTNAG	8 cut(s)	236, 254, 285, 354, 407, 633, 699, 988
DpnI	GATC	5 cut(s)	187, 383, 434, 727, 848
DpnII	GATC	5 cut(s)	185, 381, 432, 725, 846
EaeI	YGGCCR	2 cut(s)	754, 1026
Eam1104I	CTCTTC	3 cut(s)	101, 288, 907
EarI	CTCTTC	3 cut(s)	101, 288, 907
Eco130I	CCWWGG	3 cut(s)	116, 316, 780
Eco147I	AGGCCT	1 cut(s)	207
Eco24I	GRGCYC	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	113
Eco57I	CTGAAG	2 cut(s)	125, 696
Eco81I	CCTNAGG	1 cut(s)	407
EcoRII	CCWGG	2 cut(s)	30, 361
EcoT14I	CCWWGG	3 cut(s)	116, 316, 780
EcoT38I	GRGCYC	1 cut(s)	456
ErhI	CCWWGG	3 cut(s)	116, 316, 780
FaqI	GGGAC	1 cut(s)	183
Fnu4HI	GCNGC	4 cut(s)	178, 342, 786, 953
FokI	GGATG	2 cut(s)	110, 146
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	4 cut(s)	178, 342, 786, 953
FspBI	CTAG	2 cut(s)	531, 549
GlaI	GCGC	2 cut(s)	416, 620
GluI	GCNGC	4 cut(s)	178, 342, 786, 953
GsuI	CTGGAG	2 cut(s)	202, 611
HaeII	RGCGCY	1 cut(s)	418
HaeIII	GGCC	4 cut(s)	207, 276, 756, 1028
HhaI	GCGC	2 cut(s)	417, 621
Hin6I	GCGC	2 cut(s)	415, 619
HinP1I	GCGC	2 cut(s)	415, 619
HincII	GTYRAC	1 cut(s)	777
HindII	GTYRAC	1 cut(s)	777
HphI	GGTGA	1 cut(s)	848
Hpy166II	GTNNAC	2 cut(s)	243, 777
Hpy188I	TCNGA	9 cut(s)	601, 607, 634, 653, 685, 700, 898, 934, 1060
Hpy188III	TCNNGA	5 cut(s)	125, 385, 449, 590, 794
Hpy8I	GTNNAC	2 cut(s)	243, 777
HpyAV	CCTTC	2 cut(s)	69, 218
HpyCH4III	ACNGT	3 cut(s)	470, 519, 573
HpyCH4V	TGCA	4 cut(s)	203, 867, 941, 1013
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 423
HpyF3I	CTNAG	8 cut(s)	236, 254, 285, 354, 407, 633, 699, 988
HspAI	GCGC	2 cut(s)	415, 619
Kzo9I	GATC	5 cut(s)	185, 381, 432, 725, 846
LmnI	GCTCC	4 cut(s)	9, 318, 663, 914
Lsp1109I	GCAGC	4 cut(s)	189, 328, 797, 939
LweI	GCATC	2 cut(s)	359, 713
MaeI	CTAG	2 cut(s)	531, 549
MaeIII	GTNAC	4 cut(s)	89, 357, 739, 829
MalI	GATC	5 cut(s)	187, 383, 434, 727, 848
MboI	GATC	5 cut(s)	185, 381, 432, 725, 846
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	456
MlsI	TGGCCA	1 cut(s)	756
MluCI	AATT	5 cut(s)	14, 148, 247, 750, 917
MluNI	TGGCCA	1 cut(s)	756
MlyI	GAGTC	8 cut(s)	73, 115, 228, 572, 596, 653, 893, 920
MmeI	TCCRAC	2 cut(s)	619, 936
MnlI	CCTC	9 cut(s)	17, 104, 124, 280, 402, 538, 628, 694, 1064
Mox20I	TGGCCA	1 cut(s)	756
MscI	TGGCCA	1 cut(s)	756
MseI	TTAA	4 cut(s)	12, 54, 267, 969
Msp20I	TGGCCA	1 cut(s)	756
MspA1I	CMGCKG	1 cut(s)	180
MspR9I	CCNGG	2 cut(s)	32, 363
MvaI	CCWGG	2 cut(s)	32, 363
MvnI	CGCG	1 cut(s)	891
MwoI	GCNNNNNNNGC	2 cut(s)	347, 423
NcoI	CCATGG	3 cut(s)	116, 316, 780
NdeII	GATC	5 cut(s)	185, 381, 432, 725, 846
NmeAIII	GCCGAG	2 cut(s)	568, 713
NmuCI	GTSAC	1 cut(s)	89
NspI	RCATGY	2 cut(s)	203, 325
PaeI	GCATGC	2 cut(s)	203, 325
PceI	AGGCCT	1 cut(s)	207
PfeI	GAWTC	4 cut(s)	43, 139, 935, 1061
PkrI	GCNGC	4 cut(s)	179, 343, 787, 954
PleI	GAGTC	8 cut(s)	73, 115, 228, 571, 596, 652, 893, 920
PpsI	GAGTC	8 cut(s)	73, 115, 228, 571, 596, 652, 893, 920
PshBI	ATTAAT	1 cut(s)	54
Psp6I	CCWGG	2 cut(s)	30, 361
PspGI	CCWGG	2 cut(s)	30, 361
PspPI	GGNCC	2 cut(s)	113, 275
PstNI	CAGNNNCTG	1 cut(s)	938
PsuI	RGATCY	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	180
RsaI	GTAC	3 cut(s)	580, 629, 1021
RsaNI	GTAC	3 cut(s)	579, 628, 1020
SaqAI	TTAA	4 cut(s)	12, 54, 267, 969
SatI	GCNGC	4 cut(s)	178, 342, 786, 953
Sau3AI	GATC	5 cut(s)	185, 381, 432, 725, 846
Sau96I	GGNCC	2 cut(s)	113, 275
ScaI	AGTACT	1 cut(s)	1021
SchI	GAGTC	8 cut(s)	73, 115, 228, 572, 596, 653, 893, 920
ScrFI	CCNGG	2 cut(s)	32, 363
SduI	GDGCHC	1 cut(s)	456
SfaNI	GCATC	2 cut(s)	359, 713
SfcI	CTRYAG	2 cut(s)	345, 850
SinI	GGWCC	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	61, 792
SmoI	CTYRAG	2 cut(s)	61, 792
SphI	GCATGC	2 cut(s)	203, 325
Sse9I	AATT	5 cut(s)	14, 148, 247, 750, 917
SseBI	AGGCCT	1 cut(s)	207
SsiI	CCGC	2 cut(s)	424, 891
SspMI	CTAG	2 cut(s)	531, 549
StuI	AGGCCT	1 cut(s)	207
StyD4I	CCNGG	2 cut(s)	30, 361
StyI	CCWWGG	3 cut(s)	116, 316, 780
TaaI	ACNGT	3 cut(s)	470, 519, 573
TaqI	TCGA	1 cut(s)	214
TasI	AATT	5 cut(s)	14, 148, 247, 750, 917
TatI	WGTACW	1 cut(s)	1019
TfiI	GAWTC	4 cut(s)	43, 139, 935, 1061
Tru1I	TTAA	4 cut(s)	12, 54, 267, 969
Tru9I	TTAA	4 cut(s)	12, 54, 267, 969
TscAI	CASTG	2 cut(s)	524, 877
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	4 cut(s)	177, 341, 785, 952
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	2 cut(s)	813, 1016
TspGWI	ACGGA	1 cut(s)	817
TspRI	CASTG	2 cut(s)	524, 877
VpaK11BI	GGWCC	1 cut(s)	113
VspI	ATTAAT	1 cut(s)	54
XapI	RAATTY	1 cut(s)	14
XceI	RCATGY	2 cut(s)	203, 325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323
XspI	CTAG	2 cut(s)	531, 549
ZrmI	AGTACT	1 cut(s)	1021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.