MD07G1140400.v1.1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0009623
Physical Location & Seq
Reverse (-)
20367050 .. 20369244
2195 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1140400.v1.1.491

Sequence Viewer

Length: 1008 bp
ATGGGAAGGACTCCATGTTGTGACAACAAGAAGGACTTGAAGAAAGGGCCATGGTCGCCTGAGGAAGATGAGCTTCTTCTGAACTACATCAGCAAGAACCATGGCCACGGAAGCTGGCGTTCTCTTCCCAAGCTTGCAGGTCTTCAACGCTGTGGGAAGAGCTGCCGGCTAAGGTGGATAAATTATCTCAGGCCGGAAATCAAACGAGGCCCCTTCAACAAGGACGAAGAGCAACTCATCATACAGCTTCATGGCATGCTCGGAAACAGGTGGTGGGCTACTATAGCTTCTCAGTTGCCTGGAAGAACTGACAATGAGATCAAGAACTTATGGAACACGCACCTGAGGAAGCGCCTTATCGCCATGGGGATTGATCCACAAACACATGAGCTTCTTGCCTCTAACTGCTTAAATCACAATGCATCTGCTTCCGCGGCCACCCGTCACATGGCACAATGGGAGAGTGCCAGGCTTGAAGCTGAGGCTAGGCTTTCCAGGGAGTCATCAATCTTCAGCCATGCTCCAGAGAAATCTGAGTCTGACCATTTTCTGCGCTTGTGGAACTCCAATGTTGGAAAATCATTCAGAAAGCTTACGTCGGATAAATTTGCGTGCCAAAGCCCCATTTCTCAGGCATCTTCGTCGACCAAATGTGGATTGCTGTCAGCCGTGACAACAGAAGTTGGCAACAACTTAACAGGGTCATCAACCATGGCAGGCAATCAAAATGAAGATTTGGCATACAGACCTTTCTTGATCAACACTGAAGATGTAGAATATAAACCCTTCCAGTTCAACACTGAAGAGGAAGGGCACAAACTCTTCCAGTCCAACACCGAAGCGGGGGAATTCAAGATCTGCCAGTCTAACACTGAAGACAGGATGGCGGGGTCTGTCTCCTCGTGCTCAAATGATTTGGAGAACTCATCCGATACTGCACTACAGCTGCTGCTGGATTACCCAATTAACGATGACATGAGCTTCTTAGAAAACAATGCGGATGACTAA

Protein Analysis

336

Amino Acids

37.73

Weight (kDa)

5.97

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 15 - 63 3.8e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 18 - 78 1.1e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 115 1.3e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 117 1.5e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 128
AccI GTMKAC 1 cut(s) 644
AccII CGCG 1 cut(s) 434
AciI CCGC 5 cut(s) 432, 434, 842, 887, 998
AclWI GGATC 1 cut(s) 368
AcoI YGGCCR 2 cut(s) 103, 435
AcsI RAATTY 2 cut(s) 605, 848
AcuI CTGAAG 4 cut(s) 496, 786, 822, 894
AfiI CCNNNNNNNGG 2 cut(s) 448, 843
AgsI TTSAA 6 cut(s) 40, 146, 217, 476, 796, 853
AjnI CCWGG 3 cut(s) 298, 467, 494
Alw21I GWGCWC 1 cut(s) 908
Alw26I GTCTC 1 cut(s) 901
AlwI GGATC 1 cut(s) 368
AlwNI CAGNNNCTG 1 cut(s) 949
AoxI GGCC 5 cut(s) 47, 103, 191, 208, 435
ApeKI GCWGC 3 cut(s) 162, 946, 949
ApoI RAATTY 2 cut(s) 605, 848
AspLEI GCGC 2 cut(s) 354, 555
AspS9I GGNCC 2 cut(s) 47, 209
AxyI CCTNAGG 2 cut(s) 60, 344
BaeGI GKGCMC 1 cut(s) 816
BalI TGGCCA 1 cut(s) 105
BauI CACGAG 1 cut(s) 901
BbsI GAAGAC 2 cut(s) 134, 882
Bbv12I GWGCWC 1 cut(s) 908
BbvCI CCTCAGC 1 cut(s) 480
BbvI GCAGC 3 cut(s) 149, 933, 936
BccI CCATC 1 cut(s) 877
BceAI ACGGC 1 cut(s) 653
BcgI CGANNNNNNTGC 2 cut(s) 624, 658
BciT130I CCWGG 3 cut(s) 300, 469, 496
BclI TGATCA 1 cut(s) 756
BcoDI GTCTC 1 cut(s) 901
BfaI CTAG 1 cut(s) 486
BfmI CTRYAG 2 cut(s) 282, 941
BfoI RGCGCY 1 cut(s) 355
BfuAI ACCTGC 1 cut(s) 128
BglII AGATCT 1 cut(s) 855
BisI GCNGC 4 cut(s) 163, 435, 947, 950
BlsI GCNGC 4 cut(s) 164, 436, 948, 951
Bme1390I CCNGG 3 cut(s) 300, 469, 496
BmgT120I GGNCC 2 cut(s) 47, 209
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 3 cut(s) 300, 469, 496
BmsI GCATC 2 cut(s) 431, 644
BpiI GAAGAC 2 cut(s) 134, 882
BpmI CTGGAG 1 cut(s) 507
Bpu10I CCTNAGC 2 cut(s) 170, 480
BsaJI CCNNGG 7 cut(s) 50, 100, 106, 363, 432, 495, 711
Bsc4I CCNNNNNNNGG 2 cut(s) 448, 843
Bse118I RCCGGY 1 cut(s) 165
Bse1I ACTGG 3 cut(s) 790, 826, 862
Bse21I CCTNAGG 2 cut(s) 60, 344
BseBI CCWGG 3 cut(s) 300, 469, 496
BseDI CCNNGG 7 cut(s) 50, 100, 106, 363, 432, 495, 711
BseGI GGATG 3 cut(s) 888, 926, 1006
BseLI CCNNNNNNNGG 2 cut(s) 448, 843
BseMII CTCAG 7 cut(s) 51, 202, 305, 335, 471, 525, 644
BseNI ACTGG 3 cut(s) 790, 826, 862
BseRI GAGGAG 1 cut(s) 889
BseSI GKGCMC 1 cut(s) 816
BseXI GCAGC 3 cut(s) 149, 933, 936
BsgI GTGCAG 1 cut(s) 921
Bsh1236I CGCG 1 cut(s) 434
BshFI GGCC 5 cut(s) 49, 105, 193, 210, 437
BsiHKAI GWGCWC 1 cut(s) 908
BsiSI CCGG 2 cut(s) 166, 194
BslI CCNNNNNNNGG 2 cut(s) 448, 843
BsmAI GTCTC 1 cut(s) 901
BsnI GGCC 5 cut(s) 49, 105, 193, 210, 437
Bsp1286I GDGCHC 2 cut(s) 816, 908
Bsp143I GATC 4 cut(s) 318, 373, 756, 855
Bsp19I CCATGG 4 cut(s) 50, 100, 363, 711
BspACI CCGC 5 cut(s) 432, 434, 842, 887, 998
BspANI GGCC 5 cut(s) 49, 105, 193, 210, 437
BspCNI CTCAG 7 cut(s) 52, 201, 304, 336, 472, 526, 643
BspFNI CGCG 1 cut(s) 434
BspLI GGNNCC 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 128
BspPI GGATC 1 cut(s) 368
BspQI GCTCTTC 2 cut(s) 152, 222
BsrFI RCCGGY 1 cut(s) 165
BsrI ACTGG 3 cut(s) 790, 826, 862
BssAI RCCGGY 1 cut(s) 165
BssECI CCNNGG 7 cut(s) 50, 100, 106, 363, 432, 495, 711
BssMI GATC 4 cut(s) 318, 373, 756, 855
BssSI CACGAG 1 cut(s) 901
BssT1I CCWWGG 4 cut(s) 50, 100, 363, 711
Bst2BI CACGAG 1 cut(s) 901
Bst2UI CCWGG 3 cut(s) 300, 469, 496
Bst6I CTCTTC 5 cut(s) 129, 152, 222, 798, 827
BstC8I GCNNGC 6 cut(s) 116, 135, 167, 257, 613, 718
BstDEI CTNAG 9 cut(s) 60, 170, 188, 291, 344, 480, 534, 630, 985
BstDSI CCRYGG 6 cut(s) 50, 100, 106, 363, 432, 711
BstF5I GGATG 3 cut(s) 888, 926, 1006
BstFNI CGCG 1 cut(s) 434
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 2 cut(s) 354, 555
BstKTI GATC 4 cut(s) 321, 376, 759, 858
BstMAI GTCTC 1 cut(s) 901
BstMBI GATC 4 cut(s) 318, 373, 756, 855
BstMWI GCNNNNNNNGC 4 cut(s) 55, 111, 284, 434
BstNI CCWGG 3 cut(s) 300, 469, 496
BstNSI RCATGY 1 cut(s) 259
BstSCI CCNGG 3 cut(s) 298, 467, 494
BstSFI CTRYAG 2 cut(s) 282, 941
BstSLI GKGCMC 1 cut(s) 816
BstUI CGCG 1 cut(s) 434
BstV1I GCAGC 3 cut(s) 149, 933, 936
BstV2I GAAGAC 2 cut(s) 134, 882
BstX2I RGATCY 1 cut(s) 855
BstYI RGATCY 1 cut(s) 855
Bsu36I CCTNAGG 2 cut(s) 60, 344
BsuRI GGCC 5 cut(s) 49, 105, 193, 210, 437
BtgI CCRYGG 6 cut(s) 50, 100, 106, 363, 432, 711
BtsCI GGATG 3 cut(s) 888, 926, 1006
BtsIMutI CAGTG 3 cut(s) 762, 798, 870
BveI ACCTGC 1 cut(s) 128
Cac8I GCNNGC 6 cut(s) 116, 135, 167, 257, 613, 718
CaiI CAGNNNCTG 1 cut(s) 949
CfoI GCGC 2 cut(s) 354, 555
Cfr10I RCCGGY 1 cut(s) 165
Cfr13I GGNCC 2 cut(s) 47, 209
Cfr42I CCGCGG 1 cut(s) 435
DdeI CTNAG 9 cut(s) 60, 170, 188, 291, 344, 480, 534, 630, 985
DpnI GATC 4 cut(s) 320, 375, 758, 857
DpnII GATC 4 cut(s) 318, 373, 756, 855
EaeI YGGCCR 2 cut(s) 103, 435
Eam1104I CTCTTC 5 cut(s) 129, 152, 222, 798, 827
EarI CTCTTC 5 cut(s) 129, 152, 222, 798, 827
Eco130I CCWWGG 4 cut(s) 50, 100, 363, 711
Eco57I CTGAAG 4 cut(s) 496, 786, 822, 894
Eco81I CCTNAGG 2 cut(s) 60, 344
EcoO109I RGGNCCY 1 cut(s) 209
EcoRI GAATTC 1 cut(s) 848
EcoRII CCWGG 3 cut(s) 298, 467, 494
EcoT14I CCWWGG 4 cut(s) 50, 100, 363, 711
EcoT22I ATGCAT 1 cut(s) 424
ErhI CCWWGG 4 cut(s) 50, 100, 363, 711
FalI AAGNNNNNCTT 4 cut(s) 20, 52, 57, 89
FauI CCCGC 2 cut(s) 835, 880
FbaI TGATCA 1 cut(s) 756
FblI GTMKAC 1 cut(s) 644
Fnu4HI GCNGC 4 cut(s) 163, 435, 947, 950
FokI GGATG 2 cut(s) 895, 913
Fsp4HI GCNGC 4 cut(s) 163, 435, 947, 950
FspBI CTAG 1 cut(s) 486
GlaI GCGC 2 cut(s) 353, 554
GluI GCNGC 4 cut(s) 163, 435, 947, 950
GsuI CTGGAG 1 cut(s) 507
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 5 cut(s) 49, 105, 193, 210, 437
HapII CCGG 2 cut(s) 166, 194
HhaI GCGC 2 cut(s) 354, 555
Hin6I GCGC 2 cut(s) 352, 553
HinP1I GCGC 2 cut(s) 352, 553
HincII GTYRAC 1 cut(s) 645
HindII GTYRAC 1 cut(s) 645
HindIII AAGCTT 2 cut(s) 131, 590
HinfI GANTC 3 cut(s) 10, 500, 536
HpaII CCGG 2 cut(s) 166, 194
Hpy166II GTNNAC 1 cut(s) 645
Hpy188I TCNGA 7 cut(s) 81, 263, 535, 541, 587, 601, 931
Hpy188III TCNNGA 4 cut(s) 322, 524, 754, 853
Hpy8I GTNNAC 1 cut(s) 645
Hpy99I CGWCG 2 cut(s) 601, 646
HpyAV CCTTC 4 cut(s) 25, 223, 796, 803
HpyCH4IV ACGT 1 cut(s) 596
HpyCH4V TGCA 3 cut(s) 137, 422, 938
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 111, 284, 434
HpyF3I CTNAG 9 cut(s) 60, 170, 188, 291, 344, 480, 534, 630, 985
HpySE526I ACGT 1 cut(s) 596
HspAI GCGC 2 cut(s) 352, 553
KroI GCCGGC 1 cut(s) 165
KroNI GCCGGC 1 cut(s) 167
Ksp22I TGATCA 1 cut(s) 756
KspI CCGCGG 1 cut(s) 435
Kzo9I GATC 4 cut(s) 318, 373, 756, 855
LguI GCTCTTC 2 cut(s) 152, 222
LmnI GCTCC 1 cut(s) 526
Lsp1109I GCAGC 3 cut(s) 149, 933, 936
LweI GCATC 2 cut(s) 431, 644
MaeI CTAG 1 cut(s) 486
MaeII ACGT 1 cut(s) 596
MaeIII GTNAC 3 cut(s) 20, 443, 670
MalI GATC 4 cut(s) 320, 375, 758, 857
MboI GATC 4 cut(s) 318, 373, 756, 855
MflI RGATCY 1 cut(s) 855
MhlI GDGCHC 2 cut(s) 816, 908
MlsI TGGCCA 1 cut(s) 105
MluCI AATT 4 cut(s) 181, 605, 848, 963
MluNI TGGCCA 1 cut(s) 105
MlyI GAGTC 3 cut(s) 4, 509, 545
MmeI TCCRAC 3 cut(s) 553, 579, 855
MnlI CCTC 7 cut(s) 55, 200, 339, 409, 475, 799, 910
Mox20I TGGCCA 1 cut(s) 105
Mph1103I ATGCAT 1 cut(s) 424
MroNI GCCGGC 1 cut(s) 165
MscI TGGCCA 1 cut(s) 105
MseI TTAA 3 cut(s) 410, 695, 966
Msp20I TGGCCA 1 cut(s) 105
MspA1I CMGCKG 2 cut(s) 434, 946
MspI CCGG 2 cut(s) 166, 194
MspR9I CCNGG 3 cut(s) 300, 469, 496
MvaI CCWGG 3 cut(s) 300, 469, 496
MvnI CGCG 1 cut(s) 434
MwoI GCNNNNNNNGC 4 cut(s) 55, 111, 284, 434
NaeI GCCGGC 1 cut(s) 167
NcoI CCATGG 4 cut(s) 50, 100, 363, 711
NdeII GATC 4 cut(s) 318, 373, 756, 855
NgoMIV GCCGGC 1 cut(s) 165
NlaIV GGNNCC 1 cut(s) 211
NmuCI GTSAC 3 cut(s) 20, 443, 670
NsiI ATGCAT 1 cut(s) 424
NspI RCATGY 1 cut(s) 259
PaeI GCATGC 1 cut(s) 259
PciSI GCTCTTC 2 cut(s) 152, 222
PdiI GCCGGC 1 cut(s) 167
PkrI GCNGC 4 cut(s) 164, 436, 948, 951
PleI GAGTC 3 cut(s) 4, 508, 544
PpsI GAGTC 3 cut(s) 4, 508, 544
Psp6I CCWGG 3 cut(s) 298, 467, 494
PspGI CCWGG 3 cut(s) 298, 467, 494
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 2 cut(s) 47, 209
PstNI CAGNNNCTG 1 cut(s) 949
PsuI RGATCY 1 cut(s) 855
PvuII CAGCTG 1 cut(s) 946
SacII CCGCGG 1 cut(s) 435
SalI GTCGAC 1 cut(s) 643
SapI GCTCTTC 2 cut(s) 152, 222
SaqAI TTAA 3 cut(s) 410, 695, 966
SatI GCNGC 4 cut(s) 163, 435, 947, 950
Sau3AI GATC 4 cut(s) 318, 373, 756, 855
Sau96I GGNCC 2 cut(s) 47, 209
SchI GAGTC 3 cut(s) 4, 509, 545
ScrFI CCNGG 3 cut(s) 300, 469, 496
SduI GDGCHC 2 cut(s) 816, 908
SfaNI GCATC 2 cut(s) 431, 644
SfcI CTRYAG 2 cut(s) 282, 941
Sfr303I CCGCGG 1 cut(s) 435
SgrBI CCGCGG 1 cut(s) 435
SphI GCATGC 1 cut(s) 259
Sse9I AATT 4 cut(s) 181, 605, 848, 963
SsiI CCGC 5 cut(s) 432, 434, 842, 887, 998
SspMI CTAG 1 cut(s) 486
StyD4I CCNGG 3 cut(s) 298, 467, 494
StyI CCWWGG 4 cut(s) 50, 100, 363, 711
TaiI ACGT 1 cut(s) 599
TaqI TCGA 1 cut(s) 644
TasI AATT 4 cut(s) 181, 605, 848, 963
TauI GCSGC 1 cut(s) 437
Tru1I TTAA 3 cut(s) 410, 695, 966
Tru9I TTAA 3 cut(s) 410, 695, 966
TscAI CASTG 3 cut(s) 769, 805, 877
TseFI GTSAC 3 cut(s) 20, 443, 670
TseI GCWGC 3 cut(s) 162, 946, 949
Tsp45I GTSAC 3 cut(s) 20, 443, 670
TspDTI ATGAA 2 cut(s) 239, 744
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 3 cut(s) 769, 805, 877
XapI RAATTY 2 cut(s) 605, 848
XceI RCATGY 1 cut(s) 259
XcmI CCANNNNNNNNNTGG 1 cut(s) 445
XmiI GTMKAC 1 cut(s) 644
XspI CTAG 1 cut(s) 486
Zsp2I ATGCAT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.