Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0009623

Physical Location & Seq

Genomic Coordinates Forward (+)

49383121 .. 49387640

Gene Structure 4520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG236200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGCTTGGAAACAGGTGGGCTGCTATAGCTTCTCAGTTACCTGGACGAACTGACAATGAGATCAAGAACTTATGGAACACGCACCTGAGGAAGCGCCTTATCCGCATGGGGGTCAATCCACAAAATCACGAGCCCTTTACCTCTGATGGTTCAACGTCCAAAGCATCAGCTTCCATCGCGACACGCCACATGGCACAATGGGAGAGTGCTAGGCTTGAAGCTGAGGCTAGGCTGTCACGGGAGTCATCAAACTTCAGTACCCCACTTCTGGATAAATCTGATTCAGACTACTTTCTGCGCTTATGGTACTCCGAAGTTGGGGAGTCATTCAGAAAGTTCCCCACAGCAGGTAAAACTCCATCTGATAGCCCCATCTCTGAGGCATCTTCTTCAGGGAAGTGTGGATCAATCTCGGCTGTGACAACAGAAATTGGCCATTGCTTAATGGGGTCATCGACCATAGCAGGCAATCAAGATGAAGATATAGAATACAAGGTTTTCAAGTCCATTACCGGTGAAGATATGGTCTACAGGATTTACAAGTCCAACACTGAAAATGTGACACGTGGTTCTGACTCTTCAAGCTCCAACAAATTAGATGACTCGTCAGAATCTGCAATGGATTTGCTGCTGGATTACCCTATTAACAATGACATGAGCTTCTTAGAAGATGATATGAATGACTATGCAACAAGCACTTCTGCCAAGTTAGAAAATGCTTTCATTTGCCCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048580 GO:0048831 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

245

Amino Acids

27.09

Weight (kDa)

4.93

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	1 - 29	6.1e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61250
fragaria_vesca	FvH4_7g13850 FvH4_7g13850 FvH4_7g13850 FvH4_7g13850 FvH4_7g13850
malus_domestica	MD01G1054800.v1.1 MD07G1140400.v1.1
prunus_persica	Prupe.2G164300_v2.0.a1 Prupe.2G164300_v2.0.a1
pyrus_communis	pycom01g08020 pycom07g13820
rosa_chinensis	RchiOBHm_Chr1g0354061
rosa_laevigata	RLG00000028230
rosa_multiflora	Rmu_sc0006777.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301260
rosa_rugosa	Rorug01G0240700
rosa_samantha	Rh1AG251900 Rh1BG223600 Rh1CG236200 Rh1DG250500
rosa_wichuraiana	Rw1G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	338
AccI	GTMKAC	1 cut(s)	528
AccII	CGCG	1 cut(s)	179
AciI	CCGC	1 cut(s)	103
AclWI	GGATC	1 cut(s)	412
AcoI	YGGCCR	1 cut(s)	433
AcuI	CTGAAG	2 cut(s)	238, 375
AcvI	CACGTG	1 cut(s)	566
AfaI	GTAC	2 cut(s)	259, 308
AfiI	CCNNNNNNNGG	4 cut(s)	109, 268, 318, 347
AflIII	ACRYGT	1 cut(s)	563
AgeI	ACCGGT	1 cut(s)	512
AgsI	TTSAA	4 cut(s)	153, 218, 502, 582
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	5 cut(s)	29, 170, 221, 585, 660
AluI	AGCT	5 cut(s)	29, 170, 221, 585, 660
AlwI	GGATC	1 cut(s)	412
AlwNI	CAGNNNCTG	1 cut(s)	614
AoxI	GGCC	1 cut(s)	433
ApeKI	GCWGC	2 cut(s)	20, 628
AsiGI	ACCGGT	1 cut(s)	512
AspLEI	GCGC	2 cut(s)	96, 300
AsuHPI	GGTGA	1 cut(s)	527
AxyI	CCTNAGG	1 cut(s)	86
BaeI	ACNNNNGTAYC	2 cut(s)	241, 274
BalI	TGGCCA	1 cut(s)	435
BanII	GRGCYC	1 cut(s)	135
BauI	CACGAG	1 cut(s)	128
BbrPI	CACGTG	1 cut(s)	566
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	7, 615
BccI	CCATC	4 cut(s)	140, 182, 367, 380
BciT130I	CCWGG	1 cut(s)	42
BfaI	CTAG	2 cut(s)	210, 228
BfmI	CTRYAG	2 cut(s)	24, 529
BfoI	RGCGCY	1 cut(s)	97
BfuAI	ACCTGC	1 cut(s)	338
BisI	GCNGC	2 cut(s)	21, 629
BlsI	GCNGC	2 cut(s)	22, 630
Bme1390I	CCNGG	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	2 cut(s)	173, 392
Bpu10I	CCTNAGC	1 cut(s)	222
BsaAI	YACGTR	1 cut(s)	566
BsaWI	WCCGGW	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 268, 318, 347
Bse118I	RCCGGY	1 cut(s)	512
Bse21I	CCTNAGG	1 cut(s)	86
Bse3DI	GCAATG	2 cut(s)	436, 624
BseBI	CCWGG	1 cut(s)	42
BseLI	CCNNNNNNNGG	4 cut(s)	109, 268, 318, 347
BseMI	GCAATG	2 cut(s)	436, 624
BseMII	CTCAG	4 cut(s)	47, 77, 213, 369
BseXI	GCAGC	2 cut(s)	7, 615
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	1 cut(s)	435
BshTI	ACCGGT	1 cut(s)	512
BsiSI	CCGG	1 cut(s)	513
BslI	CCNNNNNNNGG	4 cut(s)	109, 268, 318, 347
BsnI	GGCC	1 cut(s)	435
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	60, 404
Bsp68I	TCGCGA	1 cut(s)	179
BspACI	CCGC	1 cut(s)	103
BspANI	GGCC	1 cut(s)	435
BspCNI	CTCAG	4 cut(s)	46, 78, 214, 370
BspFNI	CGCG	1 cut(s)	179
BspMI	ACCTGC	1 cut(s)	338
BspPI	GGATC	1 cut(s)	412
BsrDI	GCAATG	2 cut(s)	436, 624
BsrFI	RCCGGY	1 cut(s)	512
BssAI	RCCGGY	1 cut(s)	512
BssMI	GATC	2 cut(s)	60, 404
BssSI	CACGAG	1 cut(s)	128
Bst2BI	CACGAG	1 cut(s)	128
Bst2UI	CCWGG	1 cut(s)	42
Bst6I	CTCTTC	1 cut(s)	583
BstBAI	YACGTR	1 cut(s)	566
BstC8I	GCNNGC	1 cut(s)	466
BstDEI	CTNAG	5 cut(s)	33, 86, 222, 378, 664
BstFNI	CGCG	1 cut(s)	179
BstH2I	RGCGCY	1 cut(s)	97
BstHHI	GCGC	2 cut(s)	96, 300
BstKTI	GATC	2 cut(s)	63, 407
BstMBI	GATC	2 cut(s)	60, 404
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 102, 176
BstNI	CCWGG	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	40
BstSFI	CTRYAG	2 cut(s)	24, 529
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	7, 615
Bsu36I	CCTNAGG	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	435
BtgZI	GCGATG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	549
BtuMI	TCGCGA	1 cut(s)	179
BveI	ACCTGC	1 cut(s)	338
Cac8I	GCNNGC	1 cut(s)	466
CaiI	CAGNNNCTG	1 cut(s)	614
CfoI	GCGC	2 cut(s)	96, 300
Cfr10I	RCCGGY	1 cut(s)	512
Csp6I	GTAC	2 cut(s)	258, 307
CspAI	ACCGGT	1 cut(s)	512
CviAII	CATG	3 cut(s)	106, 190, 655
CviQI	GTAC	2 cut(s)	258, 307
DdeI	CTNAG	5 cut(s)	33, 86, 222, 378, 664
DpnI	GATC	2 cut(s)	62, 406
DpnII	GATC	2 cut(s)	60, 404
EaeI	YGGCCR	1 cut(s)	433
Eam1104I	CTCTTC	1 cut(s)	583
EarI	CTCTTC	1 cut(s)	583
Eco24I	GRGCYC	1 cut(s)	135
Eco57I	CTGAAG	2 cut(s)	238, 375
Eco72I	CACGTG	1 cut(s)	566
Eco81I	CCTNAGG	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	3 cut(s)	109, 193, 658
FatI	CATG	3 cut(s)	105, 189, 654
FblI	GTMKAC	1 cut(s)	528
Fnu4HI	GCNGC	2 cut(s)	21, 629
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	2 cut(s)	21, 629
FspBI	CTAG	2 cut(s)	210, 228
GlaI	GCGC	2 cut(s)	95, 299
GluI	GCNGC	2 cut(s)	21, 629
HaeII	RGCGCY	1 cut(s)	97
HaeIII	GGCC	1 cut(s)	435
HapII	CCGG	1 cut(s)	513
HhaI	GCGC	2 cut(s)	96, 300
Hin1II	CATG	3 cut(s)	109, 193, 658
Hin6I	GCGC	2 cut(s)	94, 298
HinP1I	GCGC	2 cut(s)	94, 298
HinfI	GANTC	6 cut(s)	242, 281, 323, 575, 602, 611
HpaII	CCGG	1 cut(s)	513
HphI	GGTGA	1 cut(s)	527
Hpy166II	GTNNAC	1 cut(s)	529
Hpy188III	TCNNGA	5 cut(s)	64, 128, 178, 269, 473
Hpy8I	GTNNAC	1 cut(s)	529
HpyCH4IV	ACGT	2 cut(s)	155, 565
HpyCH4V	TGCA	2 cut(s)	617, 689
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 102, 176
HpyF3I	CTNAG	5 cut(s)	33, 86, 222, 378, 664
HpySE526I	ACGT	2 cut(s)	155, 565
Hsp92II	CATG	3 cut(s)	109, 193, 658
HspAI	GCGC	2 cut(s)	94, 298
Kzo9I	GATC	2 cut(s)	60, 404
LmnI	GCTCC	1 cut(s)	590
Lsp1109I	GCAGC	2 cut(s)	7, 615
LweI	GCATC	2 cut(s)	173, 392
MaeI	CTAG	2 cut(s)	210, 228
MaeII	ACGT	2 cut(s)	155, 565
MaeIII	GTNAC	4 cut(s)	36, 234, 418, 559
MalI	GATC	2 cut(s)	62, 406
MboI	GATC	2 cut(s)	60, 404
MboII	GAAGA	6 cut(s)	378, 381, 491, 530, 570, 680
MhlI	GDGCHC	1 cut(s)	135
MlsI	TGGCCA	1 cut(s)	435
MluCI	AATT	2 cut(s)	429, 593
MluNI	TGGCCA	1 cut(s)	435
MlyI	GAGTC	4 cut(s)	251, 332, 569, 596
MmeI	TCCRAC	2 cut(s)	570, 612
MnlI	CCTC	4 cut(s)	81, 151, 217, 373
Mox20I	TGGCCA	1 cut(s)	435
MscI	TGGCCA	1 cut(s)	435
MseI	TTAA	2 cut(s)	443, 645
Msp20I	TGGCCA	1 cut(s)	435
MspI	CCGG	1 cut(s)	513
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	3 cut(s)	26, 102, 176
NdeII	GATC	2 cut(s)	60, 404
NlaIII	CATG	3 cut(s)	109, 193, 658
NmeAIII	GCCGAG	1 cut(s)	392
NmuCI	GTSAC	3 cut(s)	234, 418, 559
NruI	TCGCGA	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	281, 611
PinAI	ACCGGT	1 cut(s)	512
PkrI	GCNGC	2 cut(s)	22, 630
PleI	GAGTC	4 cut(s)	250, 331, 569, 596
PmaCI	CACGTG	1 cut(s)	566
PmlI	CACGTG	1 cut(s)	566
PpsI	GAGTC	4 cut(s)	250, 331, 569, 596
Ppu21I	YACGTR	1 cut(s)	566
Psp6I	CCWGG	1 cut(s)	40
PspCI	CACGTG	1 cut(s)	566
PspGI	CCWGG	1 cut(s)	40
PstNI	CAGNNNCTG	1 cut(s)	614
RruI	TCGCGA	1 cut(s)	179
RsaI	GTAC	2 cut(s)	259, 308
RsaNI	GTAC	2 cut(s)	258, 307
SaqAI	TTAA	2 cut(s)	443, 645
SatI	GCNGC	2 cut(s)	21, 629
Sau3AI	GATC	2 cut(s)	60, 404
SchI	GAGTC	4 cut(s)	251, 332, 569, 596
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	1 cut(s)	135
SfaNI	GCATC	2 cut(s)	173, 392
SfcI	CTRYAG	2 cut(s)	24, 529
Sse9I	AATT	2 cut(s)	429, 593
SsiI	CCGC	1 cut(s)	103
SspMI	CTAG	2 cut(s)	210, 228
StyD4I	CCNGG	1 cut(s)	40
TaiI	ACGT	2 cut(s)	158, 568
TaqI	TCGA	1 cut(s)	455
TasI	AATT	2 cut(s)	429, 593
TfiI	GAWTC	2 cut(s)	281, 611
Tru1I	TTAA	2 cut(s)	443, 645
Tru9I	TTAA	2 cut(s)	443, 645
TscAI	CASTG	1 cut(s)	556
TseFI	GTSAC	3 cut(s)	234, 418, 559
TseI	GCWGC	2 cut(s)	20, 628
Tsp45I	GTSAC	3 cut(s)	234, 418, 559
TspDTI	ATGAA	3 cut(s)	492, 692, 712
TspRI	CASTG	1 cut(s)	556
XmiI	GTMKAC	1 cut(s)	528
XspI	CTAG	2 cut(s)	210, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.