Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0009623

Physical Location & Seq

Genomic Coordinates Reverse (-)

20344294 .. 20346731

Gene Structure 2438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028230

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGGAAGAACTCCATGTTGTGACAAGAAGGGGCTGAAGAGAGGTCCATGGACACCTGATGAGGATGAGATTCTTGTCAATTACATCAACAAGAATAAGGGACATGGCAGCTGGAGAACTCTCCCACATCATGCAGGTCTTCTTCGTTGTGGAAAGAGTTGCCGGCTCAGGTGGACAAATTATCTGAGACCAGACATTAAGCGTGGCCCTTTCACTGACGAAGAAGAGAAGCTTATCATTCAGCTCCATGGCATGCTTGGAAACAGGTGGGCTGCTATAGCTTCTCAGTTACCTGGACGAACTGACAATGAGATCAAGAACTTATGGAACACGCACCTGAGGAAACGCCTTATCCGCATGGGGGTCAATCCACAAAATCACGAGCCCTTTACCTCTGATGGTTCAACTTCCAAAGCATCAGCTTCCATCGCGACACGCCACATGGCACAATGGGAGAGTGCTAGGCTTGAAGCTGAGGCTAGGCTGTCACGGGAGTCATCAAACTTCAGTACCCCACTTCTGGATAAATCTGATTCAGACTACTTTCTGCGCTTATGGTACTCCGAAGTTGGGGACTCATTCAGAAAGTTCCCCACAGCAGGTAAAACTCCGTCTGATAGCCCCATCTCTGAGGCATCTTCTTCAGGGAAGTGTGGATCAATCTCAGCTGTGACAACAGAAATTGGCCATTGCTTAATGGGGTCATCGACCATAGCAGGCAATCAAGATGAAGATATAGAATACAAGGTTTTCAAGTCCATTACTGGTGAAGATATGGTCTACAGGATTTACAAGTCCAACACTGAAAATGTGACACGTGGTTCTGACTCTTCAAGCTCCAACAAATTAGATGACTCGTCAGAATCTGCAATGGATTTGCTGCTGGATTACCCTATTAACAATGACATGAGCTTCTTAGAAGACAATATGAATGACTATGCAACAAGCTCTTCTGCCAAGTTAGAAAATGCTTTCATTTGCCCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048580 GO:0048831 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

330

Amino Acids

36.79

Weight (kDa)

6.27

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 62	1.1e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	1.6e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 113	4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 116	1.3e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61250
fragaria_vesca	FvH4_7g13850 FvH4_7g13850 FvH4_7g13850 FvH4_7g13850 FvH4_7g13850
malus_domestica	MD01G1054800.v1.1 MD07G1140400.v1.1
prunus_persica	Prupe.2G164300_v2.0.a1 Prupe.2G164300_v2.0.a1
pyrus_communis	pycom01g08020 pycom07g13820
rosa_chinensis	RchiOBHm_Chr1g0354061
rosa_laevigata	RLG00000028230
rosa_multiflora	Rmu_sc0006777.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301260
rosa_rugosa	Rorug01G0240700
rosa_samantha	Rh1AG251900 Rh1BG223600 Rh1CG236200 Rh1DG250500
rosa_wichuraiana	Rw1G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	125, 590
AccI	GTMKAC	1 cut(s)	780
AccII	CGCG	1 cut(s)	431
AciI	CCGC	1 cut(s)	355
AclWI	GGATC	1 cut(s)	664
AcoI	YGGCCR	1 cut(s)	685
AcuI	CTGAAG	3 cut(s)	56, 490, 627
AcvI	CACGTG	1 cut(s)	818
AfaI	GTAC	2 cut(s)	511, 560
AfiI	CCNNNNNNNGG	4 cut(s)	361, 520, 570, 599
AflIII	ACRYGT	1 cut(s)	815
AgsI	TTSAA	4 cut(s)	405, 470, 754, 834
AjnI	CCWGG	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	1 cut(s)	664
AlwNI	CAGNNNCTG	1 cut(s)	866
AoxI	GGCC	2 cut(s)	205, 685
ApeKI	GCWGC	3 cut(s)	108, 272, 880
AspLEI	GCGC	1 cut(s)	552
AspS9I	GGNCC	2 cut(s)	44, 206
AsuHPI	GGTGA	1 cut(s)	779
AvaII	GGWCC	1 cut(s)	44
AxyI	CCTNAGG	1 cut(s)	338
BaeI	ACNNNNGTAYC	2 cut(s)	493, 526
BalI	TGGCCA	1 cut(s)	687
BanII	GRGCYC	1 cut(s)	387
BauI	CACGAG	1 cut(s)	380
BbrPI	CACGTG	1 cut(s)	818
BbsI	GAAGAC	2 cut(s)	131, 927
BbvCI	CCTCAGC	1 cut(s)	474
BbvI	GCAGC	3 cut(s)	120, 259, 867
BccI	CCATC	3 cut(s)	392, 434, 632
BciT130I	CCWGG	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	2 cut(s)	462, 480
BfmI	CTRYAG	2 cut(s)	276, 781
BfuAI	ACCTGC	2 cut(s)	125, 590
BisI	GCNGC	3 cut(s)	109, 273, 881
BlsI	GCNGC	3 cut(s)	110, 274, 882
Bme1390I	CCNGG	1 cut(s)	294
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	44, 206
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	2 cut(s)	425, 644
BpiI	GAAGAC	2 cut(s)	131, 927
BpmI	CTGGAG	1 cut(s)	133
Bpu10I	CCTNAGC	2 cut(s)	167, 474
BsaAI	YACGTR	1 cut(s)	818
BsaI	GGTCTC	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	47, 247
Bsc4I	CCNNNNNNNGG	4 cut(s)	361, 520, 570, 599
Bse118I	RCCGGY	1 cut(s)	162
Bse1I	ACTGG	1 cut(s)	769
Bse21I	CCTNAGG	1 cut(s)	338
Bse3DI	GCAATG	2 cut(s)	688, 876
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	47, 247
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	4 cut(s)	361, 520, 570, 599
BseMI	GCAATG	2 cut(s)	688, 876
BseMII	CTCAG	7 cut(s)	176, 181, 299, 329, 465, 621, 678
BseNI	ACTGG	1 cut(s)	769
BseXI	GCAGC	3 cut(s)	120, 259, 867
Bsh1236I	CGCG	1 cut(s)	431
BshFI	GGCC	2 cut(s)	207, 687
BsiSI	CCGG	1 cut(s)	163
BslFI	GGGAC	2 cut(s)	114, 587
BslI	CCNNNNNNNGG	4 cut(s)	361, 520, 570, 599
BsmAI	GTCTC	1 cut(s)	181
BsmFI	GGGAC	2 cut(s)	114, 587
BsnI	GGCC	2 cut(s)	207, 687
Bso31I	GGTCTC	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	312, 656
Bsp19I	CCATGG	2 cut(s)	47, 247
Bsp68I	TCGCGA	1 cut(s)	431
BspACI	CCGC	1 cut(s)	355
BspANI	GGCC	2 cut(s)	207, 687
BspCNI	CTCAG	7 cut(s)	177, 180, 298, 330, 466, 622, 677
BspFNI	CGCG	1 cut(s)	431
BspMI	ACCTGC	2 cut(s)	125, 590
BspPI	GGATC	1 cut(s)	664
BspQI	GCTCTTC	1 cut(s)	955
BspTNI	GGTCTC	1 cut(s)	181
BsrDI	GCAATG	2 cut(s)	688, 876
BsrFI	RCCGGY	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	769
BssAI	RCCGGY	1 cut(s)	162
BssECI	CCNNGG	2 cut(s)	47, 247
BssMI	GATC	2 cut(s)	312, 656
BssSI	CACGAG	1 cut(s)	380
BssT1I	CCWWGG	2 cut(s)	47, 247
Bst2BI	CACGAG	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	294
Bst6I	CTCTTC	4 cut(s)	32, 219, 835, 955
BstBAI	YACGTR	1 cut(s)	818
BstC8I	GCNNGC	3 cut(s)	164, 254, 718
BstDEI	CTNAG	8 cut(s)	167, 185, 285, 338, 474, 630, 664, 916
BstDSI	CCRYGG	2 cut(s)	47, 247
BstF5I	GGATG	1 cut(s)	70
BstFNI	CGCG	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	552
BstKTI	GATC	2 cut(s)	315, 659
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	2 cut(s)	312, 656
BstMWI	GCNNNNNNNGC	3 cut(s)	278, 354, 428
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	1 cut(s)	256
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	2 cut(s)	276, 781
BstUI	CGCG	1 cut(s)	431
BstV1I	GCAGC	3 cut(s)	120, 259, 867
BstV2I	GAAGAC	2 cut(s)	131, 927
Bsu36I	CCTNAGG	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	207, 687
BtgI	CCRYGG	2 cut(s)	47, 247
BtgZI	GCGATG	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	70
BtsIMutI	CAGTG	2 cut(s)	213, 801
BtuMI	TCGCGA	1 cut(s)	431
BveI	ACCTGC	2 cut(s)	125, 590
Cac8I	GCNNGC	3 cut(s)	164, 254, 718
CaiI	CAGNNNCTG	1 cut(s)	866
CfoI	GCGC	1 cut(s)	552
Cfr10I	RCCGGY	1 cut(s)	162
Cfr13I	GGNCC	2 cut(s)	44, 206
Csp6I	GTAC	2 cut(s)	510, 559
CviAII	CATG	9 cut(s)	15, 48, 104, 131, 248, 253, 358, 442, 907
CviQI	GTAC	2 cut(s)	510, 559
DdeI	CTNAG	8 cut(s)	167, 185, 285, 338, 474, 630, 664, 916
DpnI	GATC	2 cut(s)	314, 658
DpnII	GATC	2 cut(s)	312, 656
EaeI	YGGCCR	1 cut(s)	685
Eam1104I	CTCTTC	4 cut(s)	32, 219, 835, 955
EarI	CTCTTC	4 cut(s)	32, 219, 835, 955
Eco130I	CCWWGG	2 cut(s)	47, 247
Eco24I	GRGCYC	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	3 cut(s)	56, 490, 627
Eco72I	CACGTG	1 cut(s)	818
Eco81I	CCTNAGG	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	2 cut(s)	47, 247
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	2 cut(s)	47, 247
FaeI	CATG	9 cut(s)	18, 51, 107, 134, 251, 256, 361, 445, 910
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FaqI	GGGAC	2 cut(s)	114, 587
FatI	CATG	9 cut(s)	14, 47, 103, 130, 247, 252, 357, 441, 906
FblI	GTMKAC	1 cut(s)	780
Fnu4HI	GCNGC	3 cut(s)	109, 273, 881
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	3 cut(s)	109, 273, 881
FspBI	CTAG	2 cut(s)	462, 480
GlaI	GCGC	1 cut(s)	551
GluI	GCNGC	3 cut(s)	109, 273, 881
GsuI	CTGGAG	1 cut(s)	133
HaeIII	GGCC	2 cut(s)	207, 687
HapII	CCGG	1 cut(s)	163
HhaI	GCGC	1 cut(s)	552
Hin1II	CATG	9 cut(s)	18, 51, 107, 134, 251, 256, 361, 445, 910
Hin6I	GCGC	1 cut(s)	550
HinP1I	GCGC	1 cut(s)	550
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	7 cut(s)	70, 494, 533, 575, 827, 854, 863
HpaII	CCGG	1 cut(s)	163
HphI	GGTGA	1 cut(s)	779
Hpy166II	GTNNAC	2 cut(s)	174, 781
Hpy188III	TCNNGA	5 cut(s)	316, 380, 430, 521, 725
Hpy8I	GTNNAC	2 cut(s)	174, 781
HpyAV	CCTTC	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	817
HpyCH4V	TGCA	3 cut(s)	134, 869, 941
HpyF10VI	GCNNNNNNNGC	3 cut(s)	278, 354, 428
HpyF3I	CTNAG	8 cut(s)	167, 185, 285, 338, 474, 630, 664, 916
HpySE526I	ACGT	1 cut(s)	817
Hsp92II	CATG	9 cut(s)	18, 51, 107, 134, 251, 256, 361, 445, 910
HspAI	GCGC	1 cut(s)	550
KroI	GCCGGC	1 cut(s)	162
KroNI	GCCGGC	1 cut(s)	164
Kzo9I	GATC	2 cut(s)	312, 656
LguI	GCTCTTC	1 cut(s)	955
LmnI	GCTCC	2 cut(s)	249, 842
Lsp1109I	GCAGC	3 cut(s)	120, 259, 867
LweI	GCATC	2 cut(s)	425, 644
MaeI	CTAG	2 cut(s)	462, 480
MaeII	ACGT	1 cut(s)	817
MaeIII	GTNAC	5 cut(s)	20, 288, 486, 670, 811
MalI	GATC	2 cut(s)	314, 658
MboI	GATC	2 cut(s)	312, 656
MhlI	GDGCHC	1 cut(s)	387
MlsI	TGGCCA	1 cut(s)	687
MluCI	AATT	4 cut(s)	79, 178, 681, 845
MluNI	TGGCCA	1 cut(s)	687
MlyI	GAGTC	4 cut(s)	503, 569, 821, 848
MmeI	TCCRAC	2 cut(s)	822, 864
MnlI	CCTC	6 cut(s)	35, 55, 333, 403, 469, 625
Mox20I	TGGCCA	1 cut(s)	687
MroNI	GCCGGC	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	687
MseI	TTAA	3 cut(s)	198, 695, 897
Msp20I	TGGCCA	1 cut(s)	687
MspA1I	CMGCKG	2 cut(s)	111, 668
MspI	CCGG	1 cut(s)	163
MspR9I	CCNGG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	294
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	3 cut(s)	278, 354, 428
NaeI	GCCGGC	1 cut(s)	164
NcoI	CCATGG	2 cut(s)	47, 247
NdeII	GATC	2 cut(s)	312, 656
NgoMIV	GCCGGC	1 cut(s)	162
NlaIII	CATG	9 cut(s)	18, 51, 107, 134, 251, 256, 361, 445, 910
NmuCI	GTSAC	4 cut(s)	20, 486, 670, 811
NruI	TCGCGA	1 cut(s)	431
NspI	RCATGY	1 cut(s)	256
PaeI	GCATGC	1 cut(s)	256
PciSI	GCTCTTC	1 cut(s)	955
PdiI	GCCGGC	1 cut(s)	164
PfeI	GAWTC	3 cut(s)	70, 533, 863
PkrI	GCNGC	3 cut(s)	110, 274, 882
PleI	GAGTC	4 cut(s)	502, 569, 821, 848
PmaCI	CACGTG	1 cut(s)	818
PmlI	CACGTG	1 cut(s)	818
PpsI	GAGTC	4 cut(s)	502, 569, 821, 848
Ppu21I	YACGTR	1 cut(s)	818
Psp6I	CCWGG	1 cut(s)	292
PspCI	CACGTG	1 cut(s)	818
PspGI	CCWGG	1 cut(s)	292
PspPI	GGNCC	2 cut(s)	44, 206
PstNI	CAGNNNCTG	1 cut(s)	866
PvuII	CAGCTG	2 cut(s)	111, 668
RruI	TCGCGA	1 cut(s)	431
RsaI	GTAC	2 cut(s)	511, 560
RsaNI	GTAC	2 cut(s)	510, 559
SapI	GCTCTTC	1 cut(s)	955
SaqAI	TTAA	3 cut(s)	198, 695, 897
SatI	GCNGC	3 cut(s)	109, 273, 881
Sau3AI	GATC	2 cut(s)	312, 656
Sau96I	GGNCC	2 cut(s)	44, 206
SchI	GAGTC	4 cut(s)	503, 569, 821, 848
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	1 cut(s)	387
SfaNI	GCATC	2 cut(s)	425, 644
SfcI	CTRYAG	2 cut(s)	276, 781
SinI	GGWCC	1 cut(s)	44
SphI	GCATGC	1 cut(s)	256
Sse9I	AATT	4 cut(s)	79, 178, 681, 845
SsiI	CCGC	1 cut(s)	355
SspMI	CTAG	2 cut(s)	462, 480
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	2 cut(s)	47, 247
TaiI	ACGT	1 cut(s)	820
TaqI	TCGA	1 cut(s)	707
TasI	AATT	4 cut(s)	79, 178, 681, 845
TfiI	GAWTC	3 cut(s)	70, 533, 863
Tru1I	TTAA	3 cut(s)	198, 695, 897
Tru9I	TTAA	3 cut(s)	198, 695, 897
TscAI	CASTG	2 cut(s)	220, 808
TseFI	GTSAC	4 cut(s)	20, 486, 670, 811
TseI	GCWGC	3 cut(s)	108, 272, 880
Tsp45I	GTSAC	4 cut(s)	20, 486, 670, 811
TspDTI	ATGAA	3 cut(s)	744, 944, 964
TspGWI	ACGGA	1 cut(s)	600
TspRI	CASTG	2 cut(s)	220, 808
VpaK11BI	GGWCC	1 cut(s)	44
XceI	RCATGY	1 cut(s)	256
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	780
XspI	CTAG	2 cut(s)	462, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.