Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009623

Physical Location & Seq

Genomic Coordinates Forward (+)

21408437 .. 21411686

Gene Structure 3250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G164300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGGAAGGTCTCCTTGTTGTGACAATAGAGGATTGAAGAGAGGGCCATGGTCAGCTGAAGAGGATGAGGCTCTTCTGAACTATATCAACAAGAATAATGGCCATGGCAGCTGGCGCTCTCTCCCCAAGCTTGCAGGTCTTCTACGCTGTGGGAAGAGTTGTCGGCTCAGATGGACAAATTATCTTAGGCCAGACATTAAAAGAGGCCCCTTCACCAAGGATGAAGAGAAGCTTATCATGCAGCTTCATGGCATACTCGGAAACAGGTGGGCAGCTATAGCTTCTCAGTTGCCTGGAAGAACTGACAATGAGATCAAGAATTTATGGAACACACACCTGAAGAAGCGTCTCCTCCTCATGGGGATTGATCCACAAACACATAAGCCCGTTGACTCTAACTGTTTAACTAGCACAGCACCTGCTTCCCTTGCCACCCGTCACATGGCACAATGGGAGAGTGCTAGGCTTGAAGCTGAGGCTCGGCTTTCCAGGGAGTCATCACTCTTCAGCCAACCTCCGGAGAAATCTGAGCCTGACTATTTTCTACGCTTATGGAACTCTGAAGTTGGAGAAGCATTCAGAAACCTCACTACCGTGGATAAATCTGCATGCCCTAGCCCCATGTCTCAGGCATCTTCATCGACGAAATGTGGATCAGTGTCAGCTGTGACAACAGAAGTTGGCAACACCTTAACAGGGTCATCAACCATGGCCGGAGATCAAAACGATGATATGGATGACAAGATTTGCCAGACCAACACTGAAGATGTGGGACACAATATTTGCCAGACCAACACTGAAGATGTGGGATACAAGATTTGCCAGACCAACACTGAAGATTTGGAATACAAAAGTTGCCAGACCAACACTGAAGATATGGGATACAAGATCTTCCAATCCAACACTGAAGATGTGGAGTACAAGCCCTGGCGGTTGAACACCAAAGATGTGATGGCCGGGTCGGACTCCTCATGTTCCAATGATTTAGAGGACTCGTCGGACACTGCATTGCAGCTGCTGCTGAATTTCCCCATTAACAATGACATGAGCTTCCTTGAAGACAATGTGGATGACTATGCAACAACTCCTGCTAGGTGGACACCCAATTCTTTCATTTGCCCCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048580 GO:0048831 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

376

Amino Acids

41.93

Weight (kDa)

5.1

Isoelectric Point (pI)

51.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61250
fragaria_vesca	FvH4_7g13850 FvH4_7g13850 FvH4_7g13850 FvH4_7g13850 FvH4_7g13850
malus_domestica	MD01G1054800.v1.1 MD07G1140400.v1.1
prunus_persica	Prupe.2G164300_v2.0.a1 Prupe.2G164300_v2.0.a1
pyrus_communis	pycom01g08020 pycom07g13820
rosa_chinensis	RchiOBHm_Chr1g0354061
rosa_laevigata	RLG00000028230
rosa_multiflora	Rmu_sc0006777.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301260
rosa_rugosa	Rorug01G0240700
rosa_samantha	Rh1AG251900 Rh1BG223600 Rh1CG236200 Rh1DG250500
rosa_wichuraiana	Rw1G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	427
Acc36I	ACCTGC	2 cut(s)	125, 427
AccIII	TCCGGA	1 cut(s)	517
AciI	CCGC	1 cut(s)	931
AclWI	GGATC	2 cut(s)	362, 661
AcoI	YGGCCR	3 cut(s)	100, 711, 954
AcsI	RAATTY	2 cut(s)	319, 1024
AcuI	CTGAAG	9 cut(s)	78, 359, 490, 582, 783, 819, 855, 891, 927
AfaI	GTAC	1 cut(s)	920
AfiI	CCNNNNNNNGG	4 cut(s)	358, 442, 517, 696
AgsI	TTSAA	4 cut(s)	37, 470, 937, 1058
AjnI	CCWGG	3 cut(s)	292, 488, 926
AleI	CACNNNNGTG	1 cut(s)	593
Alw26I	GTCTC	3 cut(s)	15, 353, 630
AlwI	GGATC	2 cut(s)	362, 661
AlwNI	CAGNNNCTG	2 cut(s)	419, 1018
Aor13HI	TCCGGA	1 cut(s)	517
AoxI	GGCC	6 cut(s)	44, 100, 188, 205, 711, 954
ApeKI	GCWGC	6 cut(s)	108, 241, 272, 1012, 1015, 1018
ApoI	RAATTY	2 cut(s)	319, 1024
ArsI	GACNNNNNNTTYG	2 cut(s)	765, 797
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	2 cut(s)	44, 206
AsuC2I	CCSGG	1 cut(s)	958
AsuHPI	GGTGA	1 cut(s)	205
BalI	TGGCCA	1 cut(s)	102
BbsI	GAAGAC	2 cut(s)	131, 1065
BbvCI	CCTCAGC	1 cut(s)	474
BbvI	GCAGC	6 cut(s)	120, 253, 284, 1002, 1005, 1024
BccI	CCATC	2 cut(s)	165, 946
BcgI	CGANNNNNNTGC	2 cut(s)	621, 655
BciT130I	CCWGG	3 cut(s)	294, 490, 928
BciVI	GTATCC	2 cut(s)	803, 875
BcnI	CCSGG	1 cut(s)	958
BcoDI	GTCTC	3 cut(s)	15, 353, 630
BfaI	CTAG	4 cut(s)	408, 462, 615, 1092
BfmI	CTRYAG	1 cut(s)	276
BfoI	RGCGCY	1 cut(s)	118
BfuAI	ACCTGC	2 cut(s)	125, 427
BfuI	GTATCC	2 cut(s)	803, 875
BglII	AGATCT	1 cut(s)	888
BisI	GCNGC	6 cut(s)	109, 242, 273, 1013, 1016, 1019
BlsI	GCNGC	6 cut(s)	110, 243, 274, 1014, 1017, 1020
Bme1390I	CCNGG	4 cut(s)	294, 490, 928, 958
BmgT120I	GGNCC	2 cut(s)	44, 206
BmiI	GGNNCC	1 cut(s)	208
BmrFI	CCNGG	4 cut(s)	294, 490, 928, 958
BmsI	GCATC	1 cut(s)	641
BpiI	GAAGAC	2 cut(s)	131, 1065
Bpu10I	CCTNAGC	1 cut(s)	474
BpuMI	CCSGG	1 cut(s)	958
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	7 cut(s)	47, 103, 216, 489, 594, 708, 926
BsaWI	WCCGGW	1 cut(s)	517
Bsc4I	CCNNNNNNNGG	4 cut(s)	358, 442, 517, 696
Bse3DI	GCAATG	1 cut(s)	1007
BseAI	TCCGGA	1 cut(s)	517
BseBI	CCWGG	3 cut(s)	294, 490, 928
BseDI	CCNNGG	7 cut(s)	47, 103, 216, 489, 594, 708, 926
BseGI	GGATG	4 cut(s)	70, 226, 742, 1075
BseLI	CCNNNNNNNGG	4 cut(s)	358, 442, 517, 696
BseMI	GCAATG	1 cut(s)	1007
BseMII	CTCAG	5 cut(s)	181, 299, 465, 519, 641
BseRI	GAGGAG	3 cut(s)	341, 344, 958
BseXI	GCAGC	6 cut(s)	120, 253, 284, 1002, 1005, 1024
BshFI	GGCC	6 cut(s)	46, 102, 190, 207, 713, 956
BsiSI	CCGG	3 cut(s)	518, 714, 957
BslFI	GGGAC	1 cut(s)	786
BslI	CCNNNNNNNGG	4 cut(s)	358, 442, 517, 696
BsmAI	GTCTC	3 cut(s)	15, 353, 630
BsmBI	CGTCTC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	786
BsmI	GAATGC	1 cut(s)	575
BsnI	GGCC	6 cut(s)	46, 102, 190, 207, 713, 956
Bso31I	GGTCTC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	517
Bsp143I	GATC	5 cut(s)	312, 367, 653, 718, 888
Bsp19I	CCATGG	3 cut(s)	47, 103, 708
BspACI	CCGC	1 cut(s)	931
BspANI	GGCC	6 cut(s)	46, 102, 190, 207, 713, 956
BspCNI	CTCAG	5 cut(s)	180, 298, 466, 520, 640
BspEI	TCCGGA	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	208
BspMI	ACCTGC	2 cut(s)	125, 427
BspPI	GGATC	2 cut(s)	362, 661
BspQI	GCTCTTC	1 cut(s)	78
BspTNI	GGTCTC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	1007
BssECI	CCNNGG	7 cut(s)	47, 103, 216, 489, 594, 708, 926
BssMI	GATC	5 cut(s)	312, 367, 653, 718, 888
BssT1I	CCWWGG	4 cut(s)	47, 103, 216, 708
Bst2UI	CCWGG	3 cut(s)	294, 490, 928
Bst4CI	ACNGT	2 cut(s)	401, 595
Bst6I	CTCTTC	6 cut(s)	32, 54, 78, 149, 219, 509
BstAPI	GCANNNNNTGC	1 cut(s)	1018
BstC8I	GCNNGC	3 cut(s)	113, 132, 610
BstDEI	CTNAG	6 cut(s)	167, 185, 285, 474, 528, 627
BstDSI	CCRYGG	4 cut(s)	47, 103, 594, 708
BstF5I	GGATG	4 cut(s)	70, 226, 742, 1075
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	5 cut(s)	315, 370, 656, 721, 891
BstMAI	GTCTC	3 cut(s)	15, 353, 630
BstMBI	GATC	5 cut(s)	312, 367, 653, 718, 888
BstMWI	GCNNNNNNNGC	6 cut(s)	108, 114, 238, 278, 428, 1018
BstNI	CCWGG	3 cut(s)	294, 490, 928
BstNSI	RCATGY	1 cut(s)	612
BstSCI	CCNGG	4 cut(s)	292, 488, 926, 956
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	6 cut(s)	120, 253, 284, 1002, 1005, 1024
BstV2I	GAAGAC	2 cut(s)	131, 1065
BstX2I	RGATCY	1 cut(s)	888
BstYI	RGATCY	1 cut(s)	888
BsuI	GTATCC	2 cut(s)	803, 875
BsuRI	GGCC	6 cut(s)	46, 102, 190, 207, 713, 956
BtgI	CCRYGG	4 cut(s)	47, 103, 594, 708
BtsCI	GGATG	4 cut(s)	70, 226, 742, 1075
BtsI	GCAGTG	1 cut(s)	1002
BtsIMutI	CAGTG	7 cut(s)	663, 759, 795, 831, 867, 903, 1002
BveI	ACCTGC	2 cut(s)	125, 427
Cac8I	GCNNGC	3 cut(s)	113, 132, 610
CaiI	CAGNNNCTG	2 cut(s)	419, 1018
CfoI	GCGC	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	44, 206
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	1 cut(s)	919
CviQI	GTAC	1 cut(s)	919
DdeI	CTNAG	6 cut(s)	167, 185, 285, 474, 528, 627
DpnI	GATC	5 cut(s)	314, 369, 655, 720, 890
DpnII	GATC	5 cut(s)	312, 367, 653, 718, 888
EaeI	YGGCCR	3 cut(s)	100, 711, 954
Eam1104I	CTCTTC	6 cut(s)	32, 54, 78, 149, 219, 509
EarI	CTCTTC	6 cut(s)	32, 54, 78, 149, 219, 509
Eco130I	CCWWGG	4 cut(s)	47, 103, 216, 708
Eco31I	GGTCTC	1 cut(s)	15
Eco57I	CTGAAG	9 cut(s)	78, 359, 490, 582, 783, 819, 855, 891, 927
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRII	CCWGG	3 cut(s)	292, 488, 926
EcoT14I	CCWWGG	4 cut(s)	47, 103, 216, 708
ErhI	CCWWGG	4 cut(s)	47, 103, 216, 708
Esp3I	CGTCTC	1 cut(s)	353
FalI	AAGNNNNNCTT	3 cut(s)	30, 216, 248
FaqI	GGGAC	1 cut(s)	786
Fnu4HI	GCNGC	6 cut(s)	109, 242, 273, 1013, 1016, 1019
FokI	GGATG	4 cut(s)	77, 233, 749, 1082
Fsp4HI	GCNGC	6 cut(s)	109, 242, 273, 1013, 1016, 1019
FspBI	CTAG	4 cut(s)	408, 462, 615, 1092
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	6 cut(s)	109, 242, 273, 1013, 1016, 1019
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	6 cut(s)	46, 102, 190, 207, 713, 956
HapII	CCGG	3 cut(s)	518, 714, 957
HgaI	GACGC	1 cut(s)	335
HhaI	GCGC	1 cut(s)	117
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HindIII	AAGCTT	2 cut(s)	128, 230
HinfI	GANTC	4 cut(s)	392, 494, 965, 992
HpaII	CCGG	3 cut(s)	518, 714, 957
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	2 cut(s)	391, 1098
Hpy188I	TCNGA	9 cut(s)	78, 170, 260, 529, 562, 581, 964, 1000, 1127
Hpy188III	TCNNGA	2 cut(s)	316, 518
Hpy8I	GTNNAC	2 cut(s)	391, 1098
Hpy99I	CGWCG	2 cut(s)	646, 1000
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	2 cut(s)	401, 595
HpyCH4V	TGCA	6 cut(s)	134, 241, 608, 1007, 1012, 1079
HpyF10VI	GCNNNNNNNGC	6 cut(s)	108, 114, 238, 278, 428, 1018
HpyF3I	CTNAG	6 cut(s)	167, 185, 285, 474, 528, 627
HspAI	GCGC	1 cut(s)	115
Kpn2I	TCCGGA	1 cut(s)	517
Kzo9I	GATC	5 cut(s)	312, 367, 653, 718, 888
LguI	GCTCTTC	1 cut(s)	78
Lsp1109I	GCAGC	6 cut(s)	120, 253, 284, 1002, 1005, 1024
LweI	GCATC	1 cut(s)	641
MaeI	CTAG	4 cut(s)	408, 462, 615, 1092
MaeIII	GTNAC	3 cut(s)	20, 437, 667
MalI	GATC	5 cut(s)	314, 369, 655, 720, 890
MboI	GATC	5 cut(s)	312, 367, 653, 718, 888
MflI	RGATCY	1 cut(s)	888
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	4 cut(s)	178, 319, 1024, 1105
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	4 cut(s)	386, 503, 959, 986
MmeI	TCCRAC	4 cut(s)	547, 924, 942, 978
Mox20I	TGGCCA	1 cut(s)	102
MroI	TCCGGA	1 cut(s)	517
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	4 cut(s)	198, 404, 692, 1035
MslI	CAYNNNNRTG	1 cut(s)	593
Msp20I	TGGCCA	1 cut(s)	102
MspA1I	CMGCKG	4 cut(s)	56, 111, 665, 1015
MspI	CCGG	3 cut(s)	518, 714, 957
MspR9I	CCNGG	4 cut(s)	294, 490, 928, 958
Mva1269I	GAATGC	1 cut(s)	575
MvaI	CCWGG	3 cut(s)	294, 490, 928
MwoI	GCNNNNNNNGC	6 cut(s)	108, 114, 238, 278, 428, 1018
NciI	CCSGG	1 cut(s)	958
NcoI	CCATGG	3 cut(s)	47, 103, 708
NdeII	GATC	5 cut(s)	312, 367, 653, 718, 888
NlaIV	GGNNCC	1 cut(s)	208
NmeAIII	GCCGAG	1 cut(s)	460
NmuCI	GTSAC	3 cut(s)	20, 437, 667
NspI	RCATGY	1 cut(s)	612
OliI	CACNNNNGTG	1 cut(s)	593
PaeI	GCATGC	1 cut(s)	612
PaqCI	CACCTGC	1 cut(s)	427
PciSI	GCTCTTC	1 cut(s)	78
PctI	GAATGC	1 cut(s)	575
PkrI	GCNGC	6 cut(s)	110, 243, 274, 1014, 1017, 1020
PleI	GAGTC	4 cut(s)	386, 502, 959, 986
PpsI	GAGTC	4 cut(s)	386, 502, 959, 986
Psp6I	CCWGG	3 cut(s)	292, 488, 926
PspGI	CCWGG	3 cut(s)	292, 488, 926
PspN4I	GGNNCC	1 cut(s)	208
PspPI	GGNCC	2 cut(s)	44, 206
PstNI	CAGNNNCTG	2 cut(s)	419, 1018
PsuI	RGATCY	1 cut(s)	888
PvuII	CAGCTG	4 cut(s)	56, 111, 665, 1015
RsaI	GTAC	1 cut(s)	920
RsaNI	GTAC	1 cut(s)	919
RseI	CAYNNNNRTG	1 cut(s)	593
SapI	GCTCTTC	1 cut(s)	78
SaqAI	TTAA	4 cut(s)	198, 404, 692, 1035
SatI	GCNGC	6 cut(s)	109, 242, 273, 1013, 1016, 1019
Sau3AI	GATC	5 cut(s)	312, 367, 653, 718, 888
Sau96I	GGNCC	2 cut(s)	44, 206
SchI	GAGTC	4 cut(s)	386, 503, 959, 986
ScrFI	CCNGG	4 cut(s)	294, 490, 928, 958
SfaNI	GCATC	1 cut(s)	641
SfcI	CTRYAG	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	593
SphI	GCATGC	1 cut(s)	612
Sse9I	AATT	4 cut(s)	178, 319, 1024, 1105
SsiI	CCGC	1 cut(s)	931
SspI	AATATT	1 cut(s)	781
SspMI	CTAG	4 cut(s)	408, 462, 615, 1092
StyD4I	CCNGG	4 cut(s)	292, 488, 926, 956
StyI	CCWWGG	4 cut(s)	47, 103, 216, 708
TaaI	ACNGT	2 cut(s)	401, 595
TaqI	TCGA	1 cut(s)	641
TasI	AATT	4 cut(s)	178, 319, 1024, 1105
TatI	WGTACW	1 cut(s)	918
Tru1I	TTAA	4 cut(s)	198, 404, 692, 1035
Tru9I	TTAA	4 cut(s)	198, 404, 692, 1035
TscAI	CASTG	7 cut(s)	663, 766, 802, 838, 874, 910, 1009
TseFI	GTSAC	3 cut(s)	20, 437, 667
TseI	GCWGC	6 cut(s)	108, 241, 272, 1012, 1015, 1018
Tsp45I	GTSAC	3 cut(s)	20, 437, 667
TspDTI	ATGAA	4 cut(s)	236, 237, 627, 1102
TspRI	CASTG	7 cut(s)	663, 766, 802, 838, 874, 910, 1009
XapI	RAATTY	2 cut(s)	319, 1024
XceI	RCATGY	1 cut(s)	612
XcmI	CCANNNNNNNNNTGG	2 cut(s)	439, 949
XspI	CTAG	4 cut(s)	408, 462, 615, 1092

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.