Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009623

Physical Location & Seq

Genomic Coordinates Reverse (-)

21664029 .. 21667314

Gene Structure 3286 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00301260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGAGGATGAGATTCTTGTCAATTACATCAACAAGAATAAGGGACATGGCAGCTGGAGAACTCTCCCACATCATGCAGAAACTTGTCCGTCTATATGCCACTTCACATAATGGCTTGATTCTTTTCATGTTCCTTATTTTCTCCCATTTCCCTGTATTTGTTTCGAGTGTAATATCAAGTCTTCTTCGTTGTGGAAAGAGTTGCCGGCTCAGGTGGACAAATTATCTGAGACCAGACATTAAGCGTGGCCCTTTCACTGACGAAGAAGAGAAGCTTATCATTCAGCTCCATGGCATGCTTGGAAACAGGTGGGCTGCTATAGCTTCTCAGTTACCTGGACGAACTGACAATGAGATCAAGAACTTATGGAACACGCACCTGAGGAAGCGCCTTATCCGCATGGGGGTCAATCCACAAAGTCACGAGCCCTTTACCTCTGATGGTTCAACTTCCAAAGCATCAGCTTCCATCGCGACACGCCACATGGCACAATGGGAGAGTGCTAGGCTTGAAGCTGAGGCTAGGCTGTCACGGGAGTCATCAAACTTCAGTACCCCACTACTGGATAAATCTGATTCGGACTACTTTCTGCGCTTATGGTACTCCGAAGTTGGGGAGTCATTCAGAAAGTTCCACACAGCAGGTAAAACTCCGTCTGATAGCCCCATCTCTGAGGCATCTTCTTCAGGGAAGTGTGGATCAATCTCGGCTGTGACAACAGAAATTGGCCATTGCTTAATGGGGTCATCGACCATGGCAGGCAATCAAGATGAAGATATAGAATACAAGGTTTTCAAGTCCATTACTGGTGAAGATATGGTCTACAGGATTTACAAGTCCAACACTGAAAATATGACACGTGGTTCTGACTCTTCAAGCTCCAACAAATTAGATGACTCGTCAGAATCTGCAATGGATTTGCTGCTGGATTACCCCATTAACAATGACATGAGCTTCTTAGAAGACAATATGAATGACTACGCAACAAGCACTTCTGCCAAGTTAGAAAATGCTTTCATTTGCCCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048580 GO:0048831 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

343

Amino Acids

38.58

Weight (kDa)

6.52

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_6	PF13921	62 - 91	9.1e-06	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	82 - 127	4.3e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	85 - 129	1.5e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61250
fragaria_vesca	FvH4_7g13850 FvH4_7g13850 FvH4_7g13850 FvH4_7g13850 FvH4_7g13850
malus_domestica	MD01G1054800.v1.1 MD07G1140400.v1.1
prunus_persica	Prupe.2G164300_v2.0.a1 Prupe.2G164300_v2.0.a1
pyrus_communis	pycom01g08020 pycom07g13820
rosa_chinensis	RchiOBHm_Chr1g0354061
rosa_laevigata	RLG00000028230
rosa_multiflora	Rmu_sc0006777.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301260
rosa_rugosa	Rorug01G0240700
rosa_samantha	Rh1AG251900 Rh1BG223600 Rh1CG236200 Rh1DG250500
rosa_wichuraiana	Rw1G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	632
AccI	GTMKAC	1 cut(s)	822
AccII	CGCG	1 cut(s)	473
AciI	CCGC	1 cut(s)	397
AclWI	GGATC	1 cut(s)	706
AcoI	YGGCCR	1 cut(s)	727
AcuI	CTGAAG	2 cut(s)	532, 669
AcvI	CACGTG	1 cut(s)	860
AfaI	GTAC	2 cut(s)	553, 602
AfiI	CCNNNNNNNGG	3 cut(s)	403, 562, 612
AflIII	ACRYGT	1 cut(s)	857
AgsI	TTSAA	4 cut(s)	447, 512, 796, 876
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	8 cut(s)	53, 274, 286, 323, 464, 515, 879, 954
AluI	AGCT	8 cut(s)	53, 274, 286, 323, 464, 515, 879, 954
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	1 cut(s)	706
AlwNI	CAGNNNCTG	1 cut(s)	908
AoxI	GGCC	2 cut(s)	247, 727
ApeKI	GCWGC	3 cut(s)	50, 314, 922
AspLEI	GCGC	2 cut(s)	390, 594
AspS9I	GGNCC	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	821
AxyI	CCTNAGG	1 cut(s)	380
BaeI	ACNNNNGTAYC	2 cut(s)	535, 568
BalI	TGGCCA	1 cut(s)	729
BanII	GRGCYC	1 cut(s)	429
BauI	CACGAG	1 cut(s)	422
BbrPI	CACGTG	1 cut(s)	860
BbsI	GAAGAC	2 cut(s)	173, 969
BbvCI	CCTCAGC	1 cut(s)	516
BbvI	GCAGC	3 cut(s)	62, 301, 909
BccI	CCATC	3 cut(s)	434, 476, 674
BciT130I	CCWGG	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	2 cut(s)	504, 522
BfmI	CTRYAG	2 cut(s)	318, 823
BfoI	RGCGCY	1 cut(s)	391
BfuAI	ACCTGC	1 cut(s)	632
BisI	GCNGC	3 cut(s)	51, 315, 923
BlsI	GCNGC	3 cut(s)	52, 316, 924
Bme1390I	CCNGG	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	248
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	2 cut(s)	467, 686
BpiI	GAAGAC	2 cut(s)	173, 969
BpmI	CTGGAG	1 cut(s)	75
Bpu10I	CCTNAGC	2 cut(s)	209, 516
BsaAI	YACGTR	1 cut(s)	860
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	2 cut(s)	289, 753
Bsc4I	CCNNNNNNNGG	3 cut(s)	403, 562, 612
Bse118I	RCCGGY	1 cut(s)	204
Bse1I	ACTGG	2 cut(s)	567, 811
Bse21I	CCTNAGG	1 cut(s)	380
Bse3DI	GCAATG	2 cut(s)	730, 918
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	2 cut(s)	289, 753
BseGI	GGATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	3 cut(s)	403, 562, 612
BseMI	GCAATG	2 cut(s)	730, 918
BseMII	CTCAG	6 cut(s)	218, 223, 341, 371, 507, 663
BseNI	ACTGG	2 cut(s)	567, 811
BseXI	GCAGC	3 cut(s)	62, 301, 909
Bsh1236I	CGCG	1 cut(s)	473
BshFI	GGCC	2 cut(s)	249, 729
BsiSI	CCGG	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	3 cut(s)	403, 562, 612
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	2 cut(s)	249, 729
Bso31I	GGTCTC	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp143I	GATC	2 cut(s)	354, 698
Bsp19I	CCATGG	2 cut(s)	289, 753
Bsp68I	TCGCGA	1 cut(s)	473
BspACI	CCGC	1 cut(s)	397
BspANI	GGCC	2 cut(s)	249, 729
BspCNI	CTCAG	6 cut(s)	219, 222, 340, 372, 508, 664
BspFNI	CGCG	1 cut(s)	473
BspMI	ACCTGC	1 cut(s)	632
BspPI	GGATC	1 cut(s)	706
BspTNI	GGTCTC	1 cut(s)	223
BsrDI	GCAATG	2 cut(s)	730, 918
BsrFI	RCCGGY	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	567, 811
BssAI	RCCGGY	1 cut(s)	204
BssECI	CCNNGG	2 cut(s)	289, 753
BssMI	GATC	2 cut(s)	354, 698
BssSI	CACGAG	1 cut(s)	422
BssT1I	CCWWGG	2 cut(s)	289, 753
Bst2BI	CACGAG	1 cut(s)	422
Bst2UI	CCWGG	1 cut(s)	336
Bst6I	CTCTTC	2 cut(s)	261, 877
BstBAI	YACGTR	1 cut(s)	860
BstC8I	GCNNGC	3 cut(s)	206, 296, 760
BstDEI	CTNAG	7 cut(s)	209, 227, 327, 380, 516, 672, 958
BstDSI	CCRYGG	2 cut(s)	289, 753
BstF5I	GGATG	1 cut(s)	12
BstFNI	CGCG	1 cut(s)	473
BstH2I	RGCGCY	1 cut(s)	391
BstHHI	GCGC	2 cut(s)	390, 594
BstKTI	GATC	2 cut(s)	357, 701
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	2 cut(s)	354, 698
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 396, 470
BstNI	CCWGG	1 cut(s)	336
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	334
BstSFI	CTRYAG	2 cut(s)	318, 823
BstUI	CGCG	1 cut(s)	473
BstV1I	GCAGC	3 cut(s)	62, 301, 909
BstV2I	GAAGAC	2 cut(s)	173, 969
Bsu36I	CCTNAGG	1 cut(s)	380
BsuRI	GGCC	2 cut(s)	249, 729
BtgI	CCRYGG	2 cut(s)	289, 753
BtgZI	GCGATG	1 cut(s)	454
BtsCI	GGATG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	255, 843
BtuMI	TCGCGA	1 cut(s)	473
BveI	ACCTGC	1 cut(s)	632
Cac8I	GCNNGC	3 cut(s)	206, 296, 760
CaiI	CAGNNNCTG	1 cut(s)	908
CfoI	GCGC	2 cut(s)	390, 594
Cfr10I	RCCGGY	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	248
Csp6I	GTAC	2 cut(s)	552, 601
CviAII	CATG	9 cut(s)	46, 73, 127, 290, 295, 400, 484, 754, 949
CviQI	GTAC	2 cut(s)	552, 601
DdeI	CTNAG	7 cut(s)	209, 227, 327, 380, 516, 672, 958
DpnI	GATC	2 cut(s)	356, 700
DpnII	GATC	2 cut(s)	354, 698
EaeI	YGGCCR	1 cut(s)	727
Eam1104I	CTCTTC	2 cut(s)	261, 877
EarI	CTCTTC	2 cut(s)	261, 877
Eco130I	CCWWGG	2 cut(s)	289, 753
Eco24I	GRGCYC	1 cut(s)	429
Eco31I	GGTCTC	1 cut(s)	223
Eco57I	CTGAAG	2 cut(s)	532, 669
Eco72I	CACGTG	1 cut(s)	860
Eco81I	CCTNAGG	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	334
EcoT14I	CCWWGG	2 cut(s)	289, 753
EcoT38I	GRGCYC	1 cut(s)	429
ErhI	CCWWGG	2 cut(s)	289, 753
FaeI	CATG	9 cut(s)	49, 76, 130, 293, 298, 403, 487, 757, 952
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	9 cut(s)	45, 72, 126, 289, 294, 399, 483, 753, 948
FblI	GTMKAC	1 cut(s)	822
Fnu4HI	GCNGC	3 cut(s)	51, 315, 923
FokI	GGATG	1 cut(s)	19
FriOI	GRGCYC	1 cut(s)	429
Fsp4HI	GCNGC	3 cut(s)	51, 315, 923
FspBI	CTAG	2 cut(s)	504, 522
GlaI	GCGC	2 cut(s)	389, 593
GluI	GCNGC	3 cut(s)	51, 315, 923
GsuI	CTGGAG	1 cut(s)	75
HaeII	RGCGCY	1 cut(s)	391
HaeIII	GGCC	2 cut(s)	249, 729
HapII	CCGG	1 cut(s)	205
HhaI	GCGC	2 cut(s)	390, 594
Hin1II	CATG	9 cut(s)	49, 76, 130, 293, 298, 403, 487, 757, 952
Hin6I	GCGC	2 cut(s)	388, 592
HinP1I	GCGC	2 cut(s)	388, 592
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	8 cut(s)	12, 118, 536, 575, 617, 869, 896, 905
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	1 cut(s)	821
Hpy166II	GTNNAC	2 cut(s)	216, 823
Hpy188III	TCNNGA	4 cut(s)	358, 422, 472, 767
Hpy8I	GTNNAC	2 cut(s)	216, 823
HpyCH4IV	ACGT	1 cut(s)	859
HpyCH4V	TGCA	2 cut(s)	76, 911
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 396, 470
HpyF3I	CTNAG	7 cut(s)	209, 227, 327, 380, 516, 672, 958
HpySE526I	ACGT	1 cut(s)	859
Hsp92II	CATG	9 cut(s)	49, 76, 130, 293, 298, 403, 487, 757, 952
HspAI	GCGC	2 cut(s)	388, 592
KroI	GCCGGC	1 cut(s)	204
KroNI	GCCGGC	1 cut(s)	206
Kzo9I	GATC	2 cut(s)	354, 698
LmnI	GCTCC	2 cut(s)	291, 884
Lsp1109I	GCAGC	3 cut(s)	62, 301, 909
LweI	GCATC	2 cut(s)	467, 686
MaeI	CTAG	2 cut(s)	504, 522
MaeII	ACGT	1 cut(s)	859
MaeIII	GTNAC	4 cut(s)	330, 419, 528, 712
MalI	GATC	2 cut(s)	356, 700
MboI	GATC	2 cut(s)	354, 698
MhlI	GDGCHC	1 cut(s)	429
MlsI	TGGCCA	1 cut(s)	729
MluCI	AATT	4 cut(s)	21, 220, 723, 887
MluNI	TGGCCA	1 cut(s)	729
MlyI	GAGTC	4 cut(s)	545, 626, 863, 890
MmeI	TCCRAC	2 cut(s)	864, 906
MnlI	CCTC	4 cut(s)	375, 445, 511, 667
Mox20I	TGGCCA	1 cut(s)	729
MroNI	GCCGGC	1 cut(s)	204
MscI	TGGCCA	1 cut(s)	729
MseI	TTAA	3 cut(s)	240, 737, 939
Msp20I	TGGCCA	1 cut(s)	729
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	1 cut(s)	205
MspR9I	CCNGG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	336
MvnI	CGCG	1 cut(s)	473
MwoI	GCNNNNNNNGC	3 cut(s)	320, 396, 470
NaeI	GCCGGC	1 cut(s)	206
NcoI	CCATGG	2 cut(s)	289, 753
NdeII	GATC	2 cut(s)	354, 698
NgoMIV	GCCGGC	1 cut(s)	204
NlaIII	CATG	9 cut(s)	49, 76, 130, 293, 298, 403, 487, 757, 952
NmeAIII	GCCGAG	1 cut(s)	686
NmuCI	GTSAC	3 cut(s)	419, 528, 712
NruI	TCGCGA	1 cut(s)	473
NspI	RCATGY	1 cut(s)	298
PaeI	GCATGC	1 cut(s)	298
PdiI	GCCGGC	1 cut(s)	206
PfeI	GAWTC	4 cut(s)	12, 118, 575, 905
PkrI	GCNGC	3 cut(s)	52, 316, 924
PleI	GAGTC	4 cut(s)	544, 625, 863, 890
PmaCI	CACGTG	1 cut(s)	860
PmlI	CACGTG	1 cut(s)	860
PpsI	GAGTC	4 cut(s)	544, 625, 863, 890
Ppu21I	YACGTR	1 cut(s)	860
Psp6I	CCWGG	1 cut(s)	334
PspCI	CACGTG	1 cut(s)	860
PspGI	CCWGG	1 cut(s)	334
PspPI	GGNCC	1 cut(s)	248
PstNI	CAGNNNCTG	1 cut(s)	908
PvuII	CAGCTG	1 cut(s)	53
RruI	TCGCGA	1 cut(s)	473
RsaI	GTAC	2 cut(s)	553, 602
RsaNI	GTAC	2 cut(s)	552, 601
SaqAI	TTAA	3 cut(s)	240, 737, 939
SatI	GCNGC	3 cut(s)	51, 315, 923
Sau3AI	GATC	2 cut(s)	354, 698
Sau96I	GGNCC	1 cut(s)	248
SchI	GAGTC	4 cut(s)	545, 626, 863, 890
ScrFI	CCNGG	1 cut(s)	336
SduI	GDGCHC	1 cut(s)	429
SfaNI	GCATC	2 cut(s)	467, 686
SfcI	CTRYAG	2 cut(s)	318, 823
SphI	GCATGC	1 cut(s)	298
Sse9I	AATT	4 cut(s)	21, 220, 723, 887
SsiI	CCGC	1 cut(s)	397
SspMI	CTAG	2 cut(s)	504, 522
StyD4I	CCNGG	1 cut(s)	334
StyI	CCWWGG	2 cut(s)	289, 753
TaiI	ACGT	1 cut(s)	862
TaqI	TCGA	2 cut(s)	164, 749
TasI	AATT	4 cut(s)	21, 220, 723, 887
TfiI	GAWTC	4 cut(s)	12, 118, 575, 905
Tru1I	TTAA	3 cut(s)	240, 737, 939
Tru9I	TTAA	3 cut(s)	240, 737, 939
TscAI	CASTG	2 cut(s)	262, 850
TseFI	GTSAC	3 cut(s)	419, 528, 712
TseI	GCWGC	3 cut(s)	50, 314, 922
Tsp45I	GTSAC	3 cut(s)	419, 528, 712
TspDTI	ATGAA	4 cut(s)	115, 786, 986, 1006
TspGWI	ACGGA	2 cut(s)	77, 642
TspRI	CASTG	2 cut(s)	262, 850
XceI	RCATGY	1 cut(s)	298
XcmI	CCANNNNNNNNNTGG	1 cut(s)	296
XmiI	GTMKAC	1 cut(s)	822
XspI	CTAG	2 cut(s)	504, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.