Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009623

Physical Location & Seq

Genomic Coordinates Forward (+)

9018283 .. 9020485

Gene Structure 2203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g08020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGGAGGACTCCATGTTGTGACAACAAGAAGGACTTGAAGAAGGGGCCATGGTCGCCGGAGGAAGATGAGCTTCTTCTGAACTACATCATCAAGAACCATGGACATGGAAGCTGGCGTTCTCTCCCCAAGCTTGCAGGTCTTCAACGCTGCGGGAAGAGCTGCCGGCTAAGGTGGACAAATTATCTCAGGCCGGACATTAAACGAGGCCCCTTCAGCAAGGACGAAGAGAAACTCATCATACAGCTTCATGGCATGCTCGGAAACAGGTGGGCTACCATAGCTTCTCAGTTGCCTGGAAGAACTGACAATGAGATCAAGAACTTATGGAACACGCACCTGAGGAAGGGCCTTATCGCCGTGGGGATTGATCCACAAACGCACGAGCCTCTTGCCTCTAACTGCTTAAGTAACAATGCACCTGCTTCCGCAGCCACCCGTCACATGGCACAATGGGAGAGTGCTAGGCTTGAAGCTGAGGCTCGGCTTTCCAGGGATTCATCACTCTTCAGCCGTGTTCCAGAGAAATCTGAGTCTGACCATTTTCTGCGCTTGTGGAACTCCGAGGTTGGAAAATCATTCAGAAAACTCAGTACCTCGGATAAATTTGCATGCCAAAGCCCCATTTCTCAGGCATCTTCATCGACCAAATGTGGATCGCTGTCAGCCGTGACAACAGAAGTTGGCAACTTAACTGGGTCATCAATCATGGCAGGCAATCAAAACGAAGATCTGATATACAGACCTTTCTTGATCAACACTGAAGATGTGGAATATAAACCCTTCCAGTTCAACACTGAAGAGGTGGGATACAAACCCTTCCAGTCCAACACCGAAGAGGTAGAATTCAAGATCTGCCAGTCCAACACTGAAGATGTGATGGCGGGGTCTGTCTCCTCGTGTTCAAATGATTTGGAGGACTCATCAGATACTGCATTACAGCTGCTGCTGGATTACCCAACTAATGATGACATGAGCTTCTTAGAAAACAATGCGAATGACTATGCAACAACTCCTGCGGAGCTGACACCCAATTCTTTCATTTGCCCCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048580 GO:0048831 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

352

Amino Acids

39.21

Weight (kDa)

5.51

Isoelectric Point (pI)

50.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 63	1e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 78	6.5e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 114	2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	72 - 115	1.2e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61250
fragaria_vesca	FvH4_7g13850 FvH4_7g13850 FvH4_7g13850 FvH4_7g13850 FvH4_7g13850
malus_domestica	MD01G1054800.v1.1 MD07G1140400.v1.1
prunus_persica	Prupe.2G164300_v2.0.a1 Prupe.2G164300_v2.0.a1
pyrus_communis	pycom01g08020 pycom07g13820
rosa_chinensis	RchiOBHm_Chr1g0354061
rosa_laevigata	RLG00000028230
rosa_multiflora	Rmu_sc0006777.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301260
rosa_rugosa	Rorug01G0240700
rosa_samantha	Rh1AG251900 Rh1BG223600 Rh1CG236200 Rh1DG250500
rosa_wichuraiana	Rw1G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	430
Acc36I	ACCTGC	2 cut(s)	128, 430
AciI	CCGC	4 cut(s)	153, 429, 884, 1019
AclWI	GGATC	2 cut(s)	365, 664
AcsI	RAATTY	2 cut(s)	605, 845
AcuI	CTGAAG	5 cut(s)	199, 493, 783, 819, 891
AfaI	GTAC	1 cut(s)	595
AfiI	CCNNNNNNNGG	2 cut(s)	346, 445
AflII	CTTAAG	1 cut(s)	406
AgsI	TTSAA	6 cut(s)	40, 146, 473, 793, 850, 906
AjnI	CCWGG	2 cut(s)	295, 491
Alw26I	GTCTC	1 cut(s)	898
AlwI	GGATC	2 cut(s)	365, 664
AlwNI	CAGNNNCTG	2 cut(s)	932, 946
AoxI	GGCC	4 cut(s)	47, 191, 208, 349
ApeKI	GCWGC	5 cut(s)	150, 162, 431, 943, 946
ApoI	RAATTY	2 cut(s)	605, 845
AspLEI	GCGC	1 cut(s)	552
AspS9I	GGNCC	3 cut(s)	47, 209, 349
AxyI	CCTNAGG	1 cut(s)	341
BauI	CACGAG	2 cut(s)	383, 898
BbsI	GAAGAC	1 cut(s)	134
BbvCI	CCTCAGC	1 cut(s)	477
BbvI	GCAGC	5 cut(s)	137, 149, 443, 930, 933
BccI	CCATC	1 cut(s)	874
BceAI	ACGGC	3 cut(s)	344, 498, 653
BcgI	CGANNNNNNTGC	4 cut(s)	374, 408, 624, 658
BciT130I	CCWGG	2 cut(s)	297, 493
BciVI	GTATCC	1 cut(s)	803
BclI	TGATCA	1 cut(s)	753
BcoDI	GTCTC	1 cut(s)	898
BfaI	CTAG	1 cut(s)	465
BfrI	CTTAAG	1 cut(s)	406
BfuAI	ACCTGC	2 cut(s)	128, 430
BfuI	GTATCC	1 cut(s)	803
BglII	AGATCT	2 cut(s)	730, 852
BisI	GCNGC	5 cut(s)	151, 163, 432, 944, 947
BlsI	GCNGC	5 cut(s)	152, 164, 433, 945, 948
Bme1390I	CCNGG	2 cut(s)	297, 493
BmgT120I	GGNCC	3 cut(s)	47, 209, 349
BmiI	GGNNCC	2 cut(s)	48, 211
BmrFI	CCNGG	2 cut(s)	297, 493
BmrI	ACTGGG	1 cut(s)	705
BmsI	GCATC	1 cut(s)	644
BmuI	ACTGGG	1 cut(s)	705
BpiI	GAAGAC	1 cut(s)	134
Bpu10I	CCTNAGC	2 cut(s)	170, 477
BsaJI	CCNNGG	6 cut(s)	50, 100, 360, 492, 564, 597
Bsc4I	CCNNNNNNNGG	2 cut(s)	346, 445
Bse118I	RCCGGY	1 cut(s)	165
Bse1I	ACTGG	4 cut(s)	700, 787, 823, 859
Bse21I	CCTNAGG	1 cut(s)	341
BseBI	CCWGG	2 cut(s)	297, 493
BseDI	CCNNGG	6 cut(s)	50, 100, 360, 492, 564, 597
BseLI	CCNNNNNNNGG	2 cut(s)	346, 445
BseMII	CTCAG	7 cut(s)	202, 302, 332, 468, 522, 604, 644
BseNI	ACTGG	4 cut(s)	700, 787, 823, 859
BseRI	GAGGAG	1 cut(s)	886
BseXI	GCAGC	5 cut(s)	137, 149, 443, 930, 933
BshFI	GGCC	4 cut(s)	49, 193, 210, 351
BsiSI	CCGG	3 cut(s)	59, 166, 194
BslI	CCNNNNNNNGG	2 cut(s)	346, 445
BsmAI	GTCTC	1 cut(s)	898
BsnI	GGCC	4 cut(s)	49, 193, 210, 351
Bsp143I	GATC	6 cut(s)	315, 370, 656, 730, 753, 852
Bsp19I	CCATGG	2 cut(s)	50, 100
BspACI	CCGC	4 cut(s)	153, 429, 884, 1019
BspANI	GGCC	4 cut(s)	49, 193, 210, 351
BspCNI	CTCAG	7 cut(s)	201, 301, 333, 469, 523, 603, 643
BspLI	GGNNCC	2 cut(s)	48, 211
BspMI	ACCTGC	2 cut(s)	128, 430
BspPI	GGATC	2 cut(s)	365, 664
BspQI	GCTCTTC	1 cut(s)	152
BspTI	CTTAAG	1 cut(s)	406
BsrFI	RCCGGY	1 cut(s)	165
BsrI	ACTGG	4 cut(s)	700, 787, 823, 859
BssAI	RCCGGY	1 cut(s)	165
BssECI	CCNNGG	6 cut(s)	50, 100, 360, 492, 564, 597
BssMI	GATC	6 cut(s)	315, 370, 656, 730, 753, 852
BssSI	CACGAG	2 cut(s)	383, 898
BssT1I	CCWWGG	2 cut(s)	50, 100
Bst2BI	CACGAG	2 cut(s)	383, 898
Bst2UI	CCWGG	2 cut(s)	297, 493
Bst6I	CTCTTC	5 cut(s)	152, 222, 512, 795, 831
BstAFI	CTTAAG	1 cut(s)	406
BstC8I	GCNNGC	6 cut(s)	116, 135, 167, 257, 613, 715
BstDEI	CTNAG	9 cut(s)	170, 188, 288, 341, 477, 531, 590, 630, 982
BstDSI	CCRYGG	3 cut(s)	50, 100, 360
BstENI	CCTNNNNNAGG	1 cut(s)	344
BstHHI	GCGC	1 cut(s)	552
BstKTI	GATC	6 cut(s)	318, 373, 659, 733, 756, 855
BstMAI	GTCTC	1 cut(s)	898
BstMBI	GATC	6 cut(s)	315, 370, 656, 730, 753, 852
BstMWI	GCNNNNNNNGC	5 cut(s)	55, 159, 216, 281, 431
BstNI	CCWGG	2 cut(s)	297, 493
BstNSI	RCATGY	2 cut(s)	259, 615
BstSCI	CCNGG	2 cut(s)	295, 491
BstV1I	GCAGC	5 cut(s)	137, 149, 443, 930, 933
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	2 cut(s)	730, 852
BstXI	CCANNNNNNTGG	1 cut(s)	107
BstYI	RGATCY	2 cut(s)	730, 852
Bsu36I	CCTNAGG	1 cut(s)	341
BsuI	GTATCC	1 cut(s)	803
BsuRI	GGCC	4 cut(s)	49, 193, 210, 351
BtgI	CCRYGG	3 cut(s)	50, 100, 360
BtsIMutI	CAGTG	3 cut(s)	759, 795, 867
BveI	ACCTGC	2 cut(s)	128, 430
Cac8I	GCNNGC	6 cut(s)	116, 135, 167, 257, 613, 715
CaiI	CAGNNNCTG	2 cut(s)	932, 946
CfoI	GCGC	1 cut(s)	552
Cfr10I	RCCGGY	1 cut(s)	165
Cfr13I	GGNCC	3 cut(s)	47, 209, 349
Csp6I	GTAC	1 cut(s)	594
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	9 cut(s)	170, 188, 288, 341, 477, 531, 590, 630, 982
DpnI	GATC	6 cut(s)	317, 372, 658, 732, 755, 854
DpnII	GATC	6 cut(s)	315, 370, 656, 730, 753, 852
Eam1104I	CTCTTC	5 cut(s)	152, 222, 512, 795, 831
EarI	CTCTTC	5 cut(s)	152, 222, 512, 795, 831
Eco130I	CCWWGG	2 cut(s)	50, 100
Eco57I	CTGAAG	5 cut(s)	199, 493, 783, 819, 891
Eco81I	CCTNAGG	1 cut(s)	341
EcoNI	CCTNNNNNAGG	1 cut(s)	344
EcoO109I	RGGNCCY	2 cut(s)	209, 349
EcoRI	GAATTC	1 cut(s)	845
EcoRII	CCWGG	2 cut(s)	295, 491
EcoT14I	CCWWGG	2 cut(s)	50, 100
ErhI	CCWWGG	2 cut(s)	50, 100
FalI	AAGNNNNNCTT	4 cut(s)	20, 52, 57, 89
FauI	CCCGC	2 cut(s)	146, 877
FbaI	TGATCA	1 cut(s)	753
Fnu4HI	GCNGC	5 cut(s)	151, 163, 432, 944, 947
Fsp4HI	GCNGC	5 cut(s)	151, 163, 432, 944, 947
FspBI	CTAG	1 cut(s)	465
GlaI	GCGC	1 cut(s)	551
GluI	GCNGC	5 cut(s)	151, 163, 432, 944, 947
HaeIII	GGCC	4 cut(s)	49, 193, 210, 351
HapII	CCGG	3 cut(s)	59, 166, 194
HhaI	GCGC	1 cut(s)	552
Hin6I	GCGC	1 cut(s)	550
HinP1I	GCGC	1 cut(s)	550
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	4 cut(s)	10, 497, 533, 920
HpaII	CCGG	3 cut(s)	59, 166, 194
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188III	TCNNGA	5 cut(s)	94, 319, 521, 751, 850
Hpy8I	GTNNAC	1 cut(s)	177
HpyAV	CCTTC	6 cut(s)	25, 37, 223, 340, 793, 829
HpyCH4V	TGCA	5 cut(s)	137, 419, 611, 935, 1007
HpyF10VI	GCNNNNNNNGC	5 cut(s)	55, 159, 216, 281, 431
HpyF3I	CTNAG	9 cut(s)	170, 188, 288, 341, 477, 531, 590, 630, 982
HspAI	GCGC	1 cut(s)	550
KroI	GCCGGC	1 cut(s)	165
KroNI	GCCGGC	1 cut(s)	167
Ksp22I	TGATCA	1 cut(s)	753
Kzo9I	GATC	6 cut(s)	315, 370, 656, 730, 753, 852
LguI	GCTCTTC	1 cut(s)	152
LmnI	GCTCC	1 cut(s)	1021
Lsp1109I	GCAGC	5 cut(s)	137, 149, 443, 930, 933
LweI	GCATC	1 cut(s)	644
MaeI	CTAG	1 cut(s)	465
MaeIII	GTNAC	4 cut(s)	20, 410, 440, 670
MalI	GATC	6 cut(s)	317, 372, 658, 732, 755, 854
MboI	GATC	6 cut(s)	315, 370, 656, 730, 753, 852
MflI	RGATCY	2 cut(s)	730, 852
MluCI	AATT	4 cut(s)	181, 605, 845, 1033
MlyI	GAGTC	3 cut(s)	4, 542, 914
MmeI	TCCRAC	3 cut(s)	550, 852, 888
MroNI	GCCGGC	1 cut(s)	165
MseI	TTAA	3 cut(s)	201, 407, 692
MslI	CAYNNNNRTG	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	943
MspCI	CTTAAG	1 cut(s)	406
MspI	CCGG	3 cut(s)	59, 166, 194
MspR9I	CCNGG	2 cut(s)	297, 493
MvaI	CCWGG	2 cut(s)	297, 493
MwoI	GCNNNNNNNGC	5 cut(s)	55, 159, 216, 281, 431
NaeI	GCCGGC	1 cut(s)	167
NcoI	CCATGG	2 cut(s)	50, 100
NdeII	GATC	6 cut(s)	315, 370, 656, 730, 753, 852
NgoMIV	GCCGGC	1 cut(s)	165
NlaIV	GGNNCC	2 cut(s)	48, 211
NmeAIII	GCCGAG	1 cut(s)	463
NmuCI	GTSAC	3 cut(s)	20, 440, 670
NspI	RCATGY	2 cut(s)	259, 615
PaeI	GCATGC	2 cut(s)	259, 615
PaqCI	CACCTGC	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	152
PdiI	GCCGGC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	497
PkrI	GCNGC	5 cut(s)	152, 164, 433, 945, 948
PleI	GAGTC	3 cut(s)	4, 541, 914
PpsI	GAGTC	3 cut(s)	4, 541, 914
Psp6I	CCWGG	2 cut(s)	295, 491
PspGI	CCWGG	2 cut(s)	295, 491
PspN4I	GGNNCC	2 cut(s)	48, 211
PspPI	GGNCC	3 cut(s)	47, 209, 349
PstNI	CAGNNNCTG	2 cut(s)	932, 946
PsuI	RGATCY	2 cut(s)	730, 852
PvuII	CAGCTG	1 cut(s)	943
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
RseI	CAYNNNNRTG	1 cut(s)	105
SapI	GCTCTTC	1 cut(s)	152
SaqAI	TTAA	3 cut(s)	201, 407, 692
SatI	GCNGC	5 cut(s)	151, 163, 432, 944, 947
Sau3AI	GATC	6 cut(s)	315, 370, 656, 730, 753, 852
Sau96I	GGNCC	3 cut(s)	47, 209, 349
SchI	GAGTC	3 cut(s)	4, 542, 914
ScrFI	CCNGG	2 cut(s)	297, 493
SfaNI	GCATC	1 cut(s)	644
SmiMI	CAYNNNNRTG	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	406
SmoI	CTYRAG	1 cut(s)	406
SphI	GCATGC	2 cut(s)	259, 615
Sse9I	AATT	4 cut(s)	181, 605, 845, 1033
SsiI	CCGC	4 cut(s)	153, 429, 884, 1019
SspMI	CTAG	1 cut(s)	465
StyD4I	CCNGG	2 cut(s)	295, 491
StyI	CCWWGG	2 cut(s)	50, 100
TaqI	TCGA	1 cut(s)	644
TasI	AATT	4 cut(s)	181, 605, 845, 1033
TfiI	GAWTC	1 cut(s)	497
Tru1I	TTAA	3 cut(s)	201, 407, 692
Tru9I	TTAA	3 cut(s)	201, 407, 692
TscAI	CASTG	3 cut(s)	766, 802, 874
TseFI	GTSAC	3 cut(s)	20, 440, 670
TseI	GCWGC	5 cut(s)	150, 162, 431, 943, 946
Tsp45I	GTSAC	3 cut(s)	20, 440, 670
TspDTI	ATGAA	4 cut(s)	239, 489, 630, 1030
TspRI	CASTG	3 cut(s)	766, 802, 874
Vha464I	CTTAAG	1 cut(s)	406
XagI	CCTNNNNNAGG	1 cut(s)	344
XapI	RAATTY	2 cut(s)	605, 845
XceI	RCATGY	2 cut(s)	259, 615
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.