Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009623

Physical Location & Seq

Genomic Coordinates Reverse (-)

34581365 .. 34583882

Gene Structure 2518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0240700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

ATGGCATCTCGGTTTTTCTTAACACTTTCTTTCATGCTTTATCTTTCTCCATTCGTACTTGGTTACTCTGTCAATGATCTCAAAACATGGTGCAGCCAAACCCCAAACCCACAACCATGTGAGGATCTTCTGAGCCATAACAAAAATCAAATCCCCATTAAACAAAAATCCCAGTTCTTCCAGATATCTACCCAGCTAGCCCTAGACCGGGCCATGCATGCTCAAACCAACTTCCTTTCGTTGGGCTCAAAGTTTGAAAATCCACGTGCAAAAGCTGCATGGGACGATTGTCTAGAACTCTATGACCACACAATCCAGAAGCTCAACACAACCATAAACCCCAGCACCAAGTGCACCCAGGAGGATGCTCAGACGTGGCTCAGCACCGCTCTCACAAACCTCCAGACATGCCGAGAAGGGTTTTCGGAGCTCGGGGTGTCGGATTTCTTTCTGCCTGTGATGTCGAATAACGTTTCTAATTTGATCAGCAATACTCTTTCCATTAACAACGTACCGTACAACCCTCAGCCGGCTTACAAAGACGGGTTTCCGACTTGGGTTAACCCCGGGAACCGGAAGCTCTTACAGACAACTTCTCCGAAGGCGAATCTCGTGGTGGCCAAAGACGGGTCGGGGAATTACAAGACGGTGACGGAGGCAATAACTGCCGCGTCGAAGCGATCAGGCACCGCAAGGTATGTGATATATGTGAAGGTAGGGACATACAAGGAGAACGTTGTGATAAAGTCAAAGAATATTATGTTGATGGGAGATGGCATAGGGAAGACTATTATCACAGGAAGCAAAAGTGTTGGAGGAGGTTCTACAACCTTCAATTCAGCTACAGTGGCTGTAACCGGAGATGGGTTTATTGCTCGTGACATTACATTCCAAAACACTGCCGGCGTATCAAACAACCAAGCAGTGGCACTCCGGTCTGGTTCAGATCTTTCAGTGTTCTACAGATGCAGCTTTGAGGGGTACCAAGACACCCTCTATGTCTACTCTGACAGGCAATTCTACAGAGAGTGCAACATTTATGGAACCGTAGACTTCATTTTTGGCAATGCTGCTGTGGTTTTACAAAATTGTAACATTTATGTACACAACCACCAAACCAACACTGTTACTGCTCAAGGTCGGAGCGACCCTAACCAGAACACAGGGATTTCCATTCATAACTGTAAGGTTATGGCTGCTTCGGATTTAGTCGTAAGTTCAACCAAAACGTACCTAGGAAGACCATGGAGGGAGTATTCTCGAACAGTTTTTATGAAGACGTACCTTGATAGCTTGATTAACTCGGCTGGTTGGTTGGAATGGAGTGGTACTTTTGCCCTAAAGACTCTGTACTATGGTGAGTATATGAATACTGGCCCTGGTTCATCTACTTCAGGTAGGGTTAAGTGGGCAGGTTACCATGTCATAACTAGTTCTTCGGAGGCTTCCAAGTTCACTGTTGATAATTTCATTGCTGGTAGTTCTTGGTTGCCAGCCACCAATGTGCCTTTTACGGCTGGTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048580 GO:0048831 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

508

Amino Acids

55.99

Weight (kDa)

8.85

Isoelectric Point (pI)

30.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	26 - 168	6.4e-31	Plant invertase/pectin methylesterase inhibitor
Pectinesterase	PF01095	203 - 493	1.2e-137	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61250
fragaria_vesca	FvH4_7g13850 FvH4_7g13850 FvH4_7g13850 FvH4_7g13850 FvH4_7g13850
malus_domestica	MD01G1054800.v1.1 MD07G1140400.v1.1
prunus_persica	Prupe.2G164300_v2.0.a1 Prupe.2G164300_v2.0.a1
pyrus_communis	pycom01g08020 pycom07g13820
rosa_chinensis	RchiOBHm_Chr1g0354061
rosa_laevigata	RLG00000028230
rosa_multiflora	Rmu_sc0006777.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301260
rosa_rugosa	Rorug01G0240700
rosa_samantha	Rh1AG251900 Rh1BG223600 Rh1CG236200 Rh1DG250500
rosa_wichuraiana	Rw1G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1525
Acc36I	ACCTGC	1 cut(s)	1403
Acc65I	GGTACC	1 cut(s)	981
AccB1I	GGYRCC	2 cut(s)	686, 981
AccB7I	CCANNNNNTGG	1 cut(s)	925
AccBSI	CCGCTC	1 cut(s)	389
AccI	GTMKAC	2 cut(s)	1002, 1050
AccII	CGCG	1 cut(s)	671
AciI	CCGC	3 cut(s)	387, 669, 690
AclI	AACGTT	2 cut(s)	471, 735
AclWI	GGATC	1 cut(s)	132
AcoI	YGGCCR	1 cut(s)	618
AcuI	CTGAAG	1 cut(s)	1377
AcvI	CACGTG	1 cut(s)	266
AdeI	CACNNNGTG	1 cut(s)	351
AfaI	GTAC	9 cut(s)	57, 513, 518, 983, 1104, 1232, 1283, 1330, 1352
AfiI	CCNNNNNNNGG	8 cut(s)	207, 208, 241, 529, 573, 627, 864, 925
AgsI	TTSAA	3 cut(s)	257, 835, 1221
AhlI	ACTAGT	1 cut(s)	1430
AjiI	CACGTC	1 cut(s)	375
AjnI	CCWGG	2 cut(s)	357, 1378
AleI	CACNNNNGTG	1 cut(s)	1502
AluBI	AGCT	8 cut(s)	196, 275, 322, 430, 580, 842, 972, 1293
AluI	AGCT	8 cut(s)	196, 275, 322, 430, 580, 842, 972, 1293
Alw21I	GWGCWC	2 cut(s)	356, 432
Alw44I	GTGCAC	1 cut(s)	352
AlwI	GGATC	1 cut(s)	132
AlwNI	CAGNNNCTG	1 cut(s)	851
Ama87I	CYCGRG	2 cut(s)	431, 566
AoxI	GGCC	3 cut(s)	210, 618, 1375
ApaLI	GTGCAC	1 cut(s)	352
ApeKI	GCWGC	5 cut(s)	93, 275, 969, 1070, 1196
ArsI	GACNNNNNNTTYG	2 cut(s)	1043, 1075
Asp718I	GGTACC	1 cut(s)	981
AspA2I	CCTAGG	1 cut(s)	1234
AspS9I	GGNCC	2 cut(s)	210, 1376
AsuC2I	CCSGG	3 cut(s)	209, 567, 568
AsuHPI	GGTGA	2 cut(s)	661, 1370
AsuNHI	GCTAGC	1 cut(s)	196
AvaI	CYCGRG	2 cut(s)	431, 566
AvrII	CCTAGG	1 cut(s)	1234
BaeGI	GKGCMC	1 cut(s)	356
BalI	TGGCCA	1 cut(s)	620
BanI	GGYRCC	2 cut(s)	686, 981
BanII	GRGCYC	2 cut(s)	248, 432
BauI	CACGAG	2 cut(s)	611, 876
BbrPI	CACGTG	1 cut(s)	266
BbsI	GAAGAC	3 cut(s)	791, 1246, 1283
Bbv12I	GWGCWC	2 cut(s)	356, 432
BbvCI	CCTCAGC	1 cut(s)	525
BbvI	GCAGC	5 cut(s)	105, 262, 981, 1057, 1183
BccI	CCATC	3 cut(s)	760, 767, 857
BciT130I	CCWGG	2 cut(s)	359, 1380
BclI	TGATCA	1 cut(s)	483
BcnI	CCSGG	3 cut(s)	209, 567, 568
BcuI	ACTAGT	1 cut(s)	1430
BfaI	CTAG	5 cut(s)	197, 203, 293, 1235, 1431
BfmI	CTRYAG	3 cut(s)	843, 961, 1021
BfuAI	ACCTGC	1 cut(s)	1403
BglII	AGATCT	1 cut(s)	946
BisI	GCNGC	6 cut(s)	94, 276, 669, 970, 1071, 1197
BlnI	CCTAGG	1 cut(s)	1234
BlpI	GCTNAGC	1 cut(s)	380
BlsI	GCNGC	6 cut(s)	95, 277, 670, 971, 1072, 1198
Bme1390I	CCNGG	5 cut(s)	209, 359, 567, 568, 1380
BmeT110I	CYCGRG	2 cut(s)	431, 566
BmgBI	CACGTC	1 cut(s)	375
BmgT120I	GGNCC	2 cut(s)	210, 1376
BmiI	GGNNCC	4 cut(s)	572, 688, 983, 1045
BmrFI	CCNGG	5 cut(s)	209, 359, 567, 568, 1380
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	3 cut(s)	14, 355, 956
BmtI	GCTAGC	1 cut(s)	200
BmuI	ACTGGG	1 cut(s)	166
BoxI	GACNNNNGTC	1 cut(s)	288
BpiI	GAAGAC	3 cut(s)	791, 1246, 1283
BpmI	CTGGAG	1 cut(s)	386
Bpu10I	CCTNAGC	1 cut(s)	525
Bpu1102I	GCTNAGC	1 cut(s)	380
BpuEI	CTTGAG	1 cut(s)	1119
BpuMI	CCSGG	3 cut(s)	209, 567, 568
BsaAI	YACGTR	1 cut(s)	266
BsaJI	CCNNGG	6 cut(s)	357, 565, 566, 1234, 1244, 1378
BsaWI	WCCGGW	3 cut(s)	573, 857, 933
BsaXI	ACNNNNNCTCC	2 cut(s)	580, 610
Bsc4I	CCNNNNNNNGG	8 cut(s)	207, 208, 241, 529, 573, 627, 864, 925
Bse118I	RCCGGY	2 cut(s)	529, 902
Bse1I	ACTGG	2 cut(s)	172, 1378
Bse3DI	GCAATG	2 cut(s)	1072, 1470
BseBI	CCWGG	2 cut(s)	359, 1380
BseDI	CCNNGG	6 cut(s)	357, 565, 566, 1234, 1244, 1378
BseGI	GGATG	1 cut(s)	370
BseLI	CCNNNNNNNGG	8 cut(s)	207, 208, 241, 529, 573, 627, 864, 925
BseMI	GCAATG	2 cut(s)	1072, 1470
BseMII	CTCAG	4 cut(s)	122, 383, 394, 539
BseNI	ACTGG	2 cut(s)	172, 1378
BseRI	GAGGAG	1 cut(s)	831
BseSI	GKGCMC	1 cut(s)	356
BseXI	GCAGC	5 cut(s)	105, 262, 981, 1057, 1183
BseYI	CCCAGC	2 cut(s)	192, 341
BsgI	GTGCAG	1 cut(s)	112
Bsh1236I	CGCG	1 cut(s)	671
BshFI	GGCC	3 cut(s)	212, 620, 1377
BshNI	GGYRCC	2 cut(s)	686, 981
BsiHKAI	GWGCWC	2 cut(s)	356, 432
BsiHKCI	CYCGRG	2 cut(s)	431, 566
BsiSI	CCGG	7 cut(s)	208, 530, 567, 574, 858, 903, 934
BslFI	GGGAC	2 cut(s)	296, 733
BslI	CCNNNNNNNGG	8 cut(s)	207, 208, 241, 529, 573, 627, 864, 925
BsmFI	GGGAC	2 cut(s)	296, 733
BsnI	GGCC	3 cut(s)	212, 620, 1377
BsoBI	CYCGRG	2 cut(s)	431, 566
Bsp1286I	GDGCHC	3 cut(s)	248, 356, 432
Bsp1407I	TGTACA	1 cut(s)	1102
Bsp143I	GATC	5 cut(s)	76, 124, 483, 680, 946
Bsp1720I	GCTNAGC	1 cut(s)	380
Bsp19I	CCATGG	1 cut(s)	1244
BspACI	CCGC	3 cut(s)	387, 669, 690
BspANI	GGCC	3 cut(s)	212, 620, 1377
BspCNI	CTCAG	4 cut(s)	123, 382, 393, 538
BspFNI	CGCG	1 cut(s)	671
BspLI	GGNNCC	4 cut(s)	572, 688, 983, 1045
BspMI	ACCTGC	1 cut(s)	1403
BspOI	GCTAGC	1 cut(s)	200
BspPI	GGATC	1 cut(s)	132
BspT107I	GGYRCC	2 cut(s)	686, 981
BsrBI	CCGCTC	1 cut(s)	389
BsrDI	GCAATG	2 cut(s)	1072, 1470
BsrFI	RCCGGY	2 cut(s)	529, 902
BsrGI	TGTACA	1 cut(s)	1102
BsrI	ACTGG	2 cut(s)	172, 1378
BssAI	RCCGGY	2 cut(s)	529, 902
BssECI	CCNNGG	6 cut(s)	357, 565, 566, 1234, 1244, 1378
BssMI	GATC	5 cut(s)	76, 124, 483, 680, 946
BssSI	CACGAG	2 cut(s)	611, 876
BssT1I	CCWWGG	2 cut(s)	1234, 1244
Bst2BI	CACGAG	2 cut(s)	611, 876
Bst2UI	CCWGG	2 cut(s)	359, 1380
Bst4CI	ACNGT	8 cut(s)	516, 649, 847, 1048, 1126, 1184, 1267, 1459
BstAPI	GCANNNNNTGC	3 cut(s)	275, 351, 665
BstAUI	TGTACA	1 cut(s)	1102
BstBAI	YACGTR	1 cut(s)	266
BstC8I	GCNNGC	5 cut(s)	198, 219, 531, 904, 1494
BstDEI	CTNAG	4 cut(s)	131, 369, 380, 525
BstDSI	CCRYGG	1 cut(s)	1244
BstEII	GGTNACC	1 cut(s)	1415
BstF5I	GGATG	1 cut(s)	370
BstFNI	CGCG	1 cut(s)	671
BstKTI	GATC	5 cut(s)	79, 127, 486, 683, 949
BstMBI	GATC	5 cut(s)	76, 124, 483, 680, 946
BstMWI	GCNNNNNNNGC	5 cut(s)	218, 275, 351, 665, 848
BstNI	CCWGG	2 cut(s)	359, 1380
BstNSI	RCATGY	2 cut(s)	221, 411
BstPAI	GACNNNNGTC	1 cut(s)	288
BstPI	GGTNACC	1 cut(s)	1415
BstSCI	CCNGG	5 cut(s)	207, 357, 565, 566, 1378
BstSFI	CTRYAG	3 cut(s)	843, 961, 1021
BstSLI	GKGCMC	1 cut(s)	356
BstUI	CGCG	1 cut(s)	671
BstV1I	GCAGC	5 cut(s)	105, 262, 981, 1057, 1183
BstV2I	GAAGAC	3 cut(s)	791, 1246, 1283
BstX2I	RGATCY	2 cut(s)	124, 946
BstYI	RGATCY	2 cut(s)	124, 946
BsuRI	GGCC	3 cut(s)	212, 620, 1377
BtgI	CCRYGG	1 cut(s)	1244
BtrI	CACGTC	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	370
BtsI	GCAGTG	2 cut(s)	897, 930
BtsIMutI	CAGTG	6 cut(s)	852, 897, 930, 960, 1122, 1455
BveI	ACCTGC	1 cut(s)	1403
Cac8I	GCNNGC	5 cut(s)	198, 219, 531, 904, 1494
CaiI	CAGNNNCTG	1 cut(s)	851
Cfr10I	RCCGGY	2 cut(s)	529, 902
Cfr13I	GGNCC	2 cut(s)	210, 1376
Cfr9I	CCCGGG	1 cut(s)	566
CseI	GACGC	1 cut(s)	660
Csp6I	GTAC	9 cut(s)	56, 512, 517, 982, 1103, 1231, 1282, 1329, 1351
CviAII	CATG	9 cut(s)	34, 87, 117, 214, 218, 279, 408, 1245, 1421
CviQI	GTAC	9 cut(s)	56, 512, 517, 982, 1103, 1231, 1282, 1329, 1351
DdeI	CTNAG	4 cut(s)	131, 369, 380, 525
DpnI	GATC	5 cut(s)	78, 126, 485, 682, 948
DpnII	GATC	5 cut(s)	76, 124, 483, 680, 946
DraIII	CACNNNGTG	1 cut(s)	351
EaeI	YGGCCR	1 cut(s)	618
Ecl136II	GAGCTC	1 cut(s)	430
Eco130I	CCWWGG	2 cut(s)	1234, 1244
Eco24I	GRGCYC	2 cut(s)	248, 432
Eco32I	GATATC	1 cut(s)	186
Eco53kI	GAGCTC	1 cut(s)	430
Eco57I	CTGAAG	1 cut(s)	1377
Eco72I	CACGTG	1 cut(s)	266
Eco88I	CYCGRG	2 cut(s)	431, 566
Eco91I	GGTNACC	1 cut(s)	1415
EcoICRI	GAGCTC	1 cut(s)	430
EcoO65I	GGTNACC	1 cut(s)	1415
EcoRII	CCWGG	2 cut(s)	357, 1378
EcoRV	GATATC	1 cut(s)	186
EcoT14I	CCWWGG	2 cut(s)	1234, 1244
EcoT22I	ATGCAT	1 cut(s)	219
EcoT38I	GRGCYC	2 cut(s)	248, 432
ErhI	CCWWGG	2 cut(s)	1234, 1244
FaeI	CATG	9 cut(s)	37, 90, 120, 217, 221, 282, 411, 1248, 1424
FaqI	GGGAC	2 cut(s)	296, 733
FatI	CATG	9 cut(s)	33, 86, 116, 213, 217, 278, 407, 1244, 1420
FbaI	TGATCA	1 cut(s)	483
FblI	GTMKAC	2 cut(s)	1002, 1050
Fnu4HI	GCNGC	6 cut(s)	94, 276, 669, 970, 1071, 1197
FokI	GGATG	1 cut(s)	377
FriOI	GRGCYC	2 cut(s)	248, 432
Fsp4HI	GCNGC	6 cut(s)	94, 276, 669, 970, 1071, 1197
FspBI	CTAG	5 cut(s)	197, 203, 293, 1235, 1431
GluI	GCNGC	6 cut(s)	94, 276, 669, 970, 1071, 1197
GsaI	CCCAGC	2 cut(s)	196, 345
GsuI	CTGGAG	1 cut(s)	386
HaeIII	GGCC	3 cut(s)	212, 620, 1377
HapII	CCGG	7 cut(s)	208, 530, 567, 574, 858, 903, 934
HgaI	GACGC	1 cut(s)	660
Hin1II	CATG	9 cut(s)	37, 90, 120, 217, 221, 282, 411, 1248, 1424
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HinfI	GANTC	2 cut(s)	607, 1345
HpaI	GTTAAC	1 cut(s)	562
HpaII	CCGG	7 cut(s)	208, 530, 567, 574, 858, 903, 934
HphI	GGTGA	2 cut(s)	661, 1370
Hpy166II	GTNNAC	6 cut(s)	354, 562, 1003, 1051, 1105, 1455
Hpy188III	TCNNGA	6 cut(s)	181, 293, 316, 403, 878, 1260
Hpy8I	GTNNAC	6 cut(s)	354, 562, 1003, 1051, 1105, 1455
Hpy99I	CGWCG	1 cut(s)	676
HpyAV	CCTTC	4 cut(s)	410, 595, 706, 841
HpyCH4III	ACNGT	8 cut(s)	516, 649, 847, 1048, 1126, 1184, 1267, 1459
HpyCH4IV	ACGT	7 cut(s)	265, 374, 471, 510, 735, 1229, 1280
HpyCH4V	TGCA	7 cut(s)	93, 217, 269, 278, 354, 969, 1032
HpyF10VI	GCNNNNNNNGC	5 cut(s)	218, 275, 351, 665, 848
HpyF3I	CTNAG	4 cut(s)	131, 369, 380, 525
HpySE526I	ACGT	7 cut(s)	265, 374, 471, 510, 735, 1229, 1280
Hsp92II	CATG	9 cut(s)	37, 90, 120, 217, 221, 282, 411, 1248, 1424
KpnI	GGTACC	1 cut(s)	985
KroI	GCCGGC	2 cut(s)	529, 902
KroNI	GCCGGC	2 cut(s)	531, 904
Ksp22I	TGATCA	1 cut(s)	483
KspAI	GTTAAC	1 cut(s)	562
Kzo9I	GATC	5 cut(s)	76, 124, 483, 680, 946
LmnI	GCTCC	2 cut(s)	427, 1143
Lsp1109I	GCAGC	5 cut(s)	105, 262, 981, 1057, 1183
LweI	GCATC	3 cut(s)	14, 355, 956
MaeI	CTAG	5 cut(s)	197, 203, 293, 1235, 1431
MaeII	ACGT	7 cut(s)	265, 374, 471, 510, 735, 1229, 1280
MaeIII	GTNAC	7 cut(s)	62, 649, 853, 878, 1091, 1126, 1415
MalI	GATC	5 cut(s)	78, 126, 485, 682, 948
MbiI	CCGCTC	1 cut(s)	389
MboI	GATC	5 cut(s)	76, 124, 483, 680, 946
MboII	GAAGA	6 cut(s)	119, 169, 796, 1251, 1288, 1428
MflI	RGATCY	2 cut(s)	124, 946
MhlI	GDGCHC	3 cut(s)	248, 356, 432
MlsI	TGGCCA	1 cut(s)	620
MluCI	AATT	6 cut(s)	478, 637, 835, 1016, 1087, 1465
MluNI	TGGCCA	1 cut(s)	620
MlyI	GAGTC	1 cut(s)	1339
MmeI	TCCRAC	5 cut(s)	420, 575, 793, 1121, 1296
Mox20I	TGGCCA	1 cut(s)	620
Mph1103I	ATGCAT	1 cut(s)	219
MroNI	GCCGGC	2 cut(s)	529, 902
MscI	TGGCCA	1 cut(s)	620
MseI	TTAA	6 cut(s)	20, 159, 504, 561, 1299, 1404
MslI	CAYNNNNRTG	2 cut(s)	115, 1502
Msp20I	TGGCCA	1 cut(s)	620
MspI	CCGG	7 cut(s)	208, 530, 567, 574, 858, 903, 934
MspR9I	CCNGG	5 cut(s)	209, 359, 567, 568, 1380
MvaI	CCWGG	2 cut(s)	359, 1380
MvnI	CGCG	1 cut(s)	671
MwoI	GCNNNNNNNGC	5 cut(s)	218, 275, 351, 665, 848
NaeI	GCCGGC	2 cut(s)	531, 904
NciI	CCSGG	3 cut(s)	209, 567, 568
NcoI	CCATGG	1 cut(s)	1244
NdeII	GATC	5 cut(s)	76, 124, 483, 680, 946
NgoMIV	GCCGGC	2 cut(s)	529, 902
NheI	GCTAGC	1 cut(s)	196
NlaIII	CATG	9 cut(s)	37, 90, 120, 217, 221, 282, 411, 1248, 1424
NlaIV	GGNNCC	4 cut(s)	572, 688, 983, 1045
NmeAIII	GCCGAG	2 cut(s)	437, 1283
NmuCI	GTSAC	2 cut(s)	649, 878
NsiI	ATGCAT	1 cut(s)	219
NspI	RCATGY	2 cut(s)	221, 411
OliI	CACNNNNGTG	1 cut(s)	1502
PaeI	GCATGC	1 cut(s)	221
PdiI	GCCGGC	2 cut(s)	531, 904
PfeI	GAWTC	1 cut(s)	607
PflMI	CCANNNNNTGG	1 cut(s)	925
PkrI	GCNGC	6 cut(s)	95, 277, 670, 971, 1072, 1198
PleI	GAGTC	1 cut(s)	1339
PmaCI	CACGTG	1 cut(s)	266
PmlI	CACGTG	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	1339
Ppu21I	YACGTR	1 cut(s)	266
PshAI	GACNNNNGTC	1 cut(s)	288
PsiI	TTATAA	1 cut(s)	1525
Psp124BI	GAGCTC	1 cut(s)	432
Psp1406I	AACGTT	2 cut(s)	471, 735
Psp6I	CCWGG	2 cut(s)	357, 1378
PspCI	CACGTG	1 cut(s)	266
PspEI	GGTNACC	1 cut(s)	1415
PspFI	CCCAGC	2 cut(s)	192, 341
PspGI	CCWGG	2 cut(s)	357, 1378
PspN4I	GGNNCC	4 cut(s)	572, 688, 983, 1045
PspPI	GGNCC	2 cut(s)	210, 1376
PstNI	CAGNNNCTG	1 cut(s)	851
PsuI	RGATCY	2 cut(s)	124, 946
RsaI	GTAC	9 cut(s)	57, 513, 518, 983, 1104, 1232, 1283, 1330, 1352
RsaNI	GTAC	9 cut(s)	56, 512, 517, 982, 1103, 1231, 1282, 1329, 1351
RseI	CAYNNNNRTG	2 cut(s)	115, 1502
SacI	GAGCTC	1 cut(s)	432
SaqAI	TTAA	6 cut(s)	20, 159, 504, 561, 1299, 1404
SatI	GCNGC	6 cut(s)	94, 276, 669, 970, 1071, 1197
Sau3AI	GATC	5 cut(s)	76, 124, 483, 680, 946
Sau96I	GGNCC	2 cut(s)	210, 1376
SchI	GAGTC	1 cut(s)	1339
ScrFI	CCNGG	5 cut(s)	209, 359, 567, 568, 1380
SduI	GDGCHC	3 cut(s)	248, 356, 432
SfaNI	GCATC	3 cut(s)	14, 355, 956
SfcI	CTRYAG	3 cut(s)	843, 961, 1021
SmaI	CCCGGG	1 cut(s)	568
SmiMI	CAYNNNNRTG	2 cut(s)	115, 1502
SmlI	CTYRAG	1 cut(s)	1134
SmoI	CTYRAG	1 cut(s)	1134
SpeI	ACTAGT	1 cut(s)	1430
SphI	GCATGC	1 cut(s)	221
Sse9I	AATT	6 cut(s)	478, 637, 835, 1016, 1087, 1465
SsiI	CCGC	3 cut(s)	387, 669, 690
SspI	AATATT	1 cut(s)	757
SspMI	CTAG	5 cut(s)	197, 203, 293, 1235, 1431
SstI	GAGCTC	1 cut(s)	432
StyD4I	CCNGG	5 cut(s)	207, 357, 565, 566, 1378
StyI	CCWWGG	2 cut(s)	1234, 1244
TaaI	ACNGT	8 cut(s)	516, 649, 847, 1048, 1126, 1184, 1267, 1459
TaiI	ACGT	7 cut(s)	268, 377, 474, 513, 738, 1232, 1283
TaqI	TCGA	3 cut(s)	464, 674, 1261
TasI	AATT	6 cut(s)	478, 637, 835, 1016, 1087, 1465
TatI	WGTACW	2 cut(s)	1102, 1350
TauI	GCSGC	1 cut(s)	671
TfiI	GAWTC	1 cut(s)	607
Tru1I	TTAA	6 cut(s)	20, 159, 504, 561, 1299, 1404
Tru9I	TTAA	6 cut(s)	20, 159, 504, 561, 1299, 1404
TscAI	CASTG	6 cut(s)	852, 904, 930, 960, 1129, 1462
TseFI	GTSAC	2 cut(s)	649, 878
TseI	GCWGC	5 cut(s)	93, 275, 969, 1070, 1196
Tsp45I	GTSAC	2 cut(s)	649, 878
TspDTI	ATGAA	7 cut(s)	22, 1045, 1166, 1289, 1374, 1382, 1459
TspGWI	ACGGA	1 cut(s)	668
TspMI	CCCGGG	1 cut(s)	566
TspRI	CASTG	6 cut(s)	852, 904, 930, 960, 1129, 1462
Van91I	CCANNNNNTGG	1 cut(s)	925
VneI	GTGCAC	1 cut(s)	352
XbaI	TCTAGA	1 cut(s)	292
XceI	RCATGY	2 cut(s)	221, 411
XmaI	CCCGGG	1 cut(s)	566
XmaJI	CCTAGG	1 cut(s)	1234
XmiI	GTMKAC	2 cut(s)	1002, 1050
XspI	CTAG	5 cut(s)	197, 203, 293, 1235, 1431
Zsp2I	ATGCAT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.