Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0009623

Physical Location & Seq

Genomic Coordinates Forward (+)

46721011 .. 46721643

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG251900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGGGTCAATCCACAAAATCACGAGCCCTTTACCTCTGATGGTTCAACTTCCAAAGCATCAGCTTCCATCGCGACACGCCACATGGCACAATGGGAGAGTGCTAGGCTTGAAGCTGAGGCTAGGCTGTCACGGGAGTCATCAAACTTCAGTACCCCACTTCTGGATAAATCTGATTCAGACTACTTTCTGCGCTTATGGTACTCCGAAGTTGGGGAGTCATTCAGAAAGTTCCCCACAGCAGGTAAAACTCCATCTGATAGCCCCATCTCTGAGGCATCTTCTTCAGGGAAGTGTGGATCAATCTCGGCTGTGACAACAGAAATTGGCCATTGCTTAATGGGGTCATCGACCATAGCAGGCAATCAAGATGAAGATATAGAATACAAGGTTTTCAAGTCCATTACTGGTGAAGATATGGTCTACAGGATTTACAAGTCCAACACTGAAAATGTGACACGTGGTTCTGACTCTTCAAGCTCCAACAAATTAGATGACTCGTCAGAATCTGCAATGGATTTGCTGCTGGATTACCCTATTAACAATGACATGAGCTTCTTAGAAGACGATATGAATGACTATGCAACAAGCACTTCTGCCAAGTTAGAAAATGCGTTCATTTGCCCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048580 GO:0048831 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

210

Amino Acids

22.96

Weight (kDa)

4.5

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61250
fragaria_vesca	FvH4_7g13850 FvH4_7g13850 FvH4_7g13850 FvH4_7g13850 FvH4_7g13850
malus_domestica	MD01G1054800.v1.1 MD07G1140400.v1.1
prunus_persica	Prupe.2G164300_v2.0.a1 Prupe.2G164300_v2.0.a1
pyrus_communis	pycom01g08020 pycom07g13820
rosa_chinensis	RchiOBHm_Chr1g0354061
rosa_laevigata	RLG00000028230
rosa_multiflora	Rmu_sc0006777.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301260
rosa_rugosa	Rorug01G0240700
rosa_samantha	Rh1AG251900 Rh1BG223600 Rh1CG236200 Rh1DG250500
rosa_wichuraiana	Rw1G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	233
AccI	GTMKAC	1 cut(s)	423
AccII	CGCG	1 cut(s)	74
AclWI	GGATC	1 cut(s)	307
AcoI	YGGCCR	1 cut(s)	328
AcuI	CTGAAG	2 cut(s)	133, 270
AcvI	CACGTG	1 cut(s)	461
AfaI	GTAC	2 cut(s)	154, 203
AfiI	CCNNNNNNNGG	3 cut(s)	163, 213, 242
AflIII	ACRYGT	1 cut(s)	458
AgsI	TTSAA	4 cut(s)	48, 113, 397, 477
AluBI	AGCT	4 cut(s)	65, 116, 480, 555
AluI	AGCT	4 cut(s)	65, 116, 480, 555
AlwI	GGATC	1 cut(s)	307
AlwNI	CAGNNNCTG	1 cut(s)	509
AoxI	GGCC	1 cut(s)	328
ApeKI	GCWGC	1 cut(s)	523
AspLEI	GCGC	1 cut(s)	195
AsuHPI	GGTGA	1 cut(s)	422
BaeI	ACNNNNGTAYC	2 cut(s)	136, 169
BalI	TGGCCA	1 cut(s)	330
BanII	GRGCYC	1 cut(s)	30
BauI	CACGAG	1 cut(s)	23
BbrPI	CACGTG	1 cut(s)	461
BbsI	GAAGAC	1 cut(s)	570
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	4 cut(s)	35, 77, 262, 275
BfaI	CTAG	2 cut(s)	105, 123
BfmI	CTRYAG	1 cut(s)	424
BfuAI	ACCTGC	1 cut(s)	233
BisI	GCNGC	1 cut(s)	524
BlsI	GCNGC	1 cut(s)	525
BmsI	GCATC	2 cut(s)	68, 287
BpiI	GAAGAC	1 cut(s)	570
Bpu10I	CCTNAGC	1 cut(s)	117
BsaAI	YACGTR	1 cut(s)	461
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 213, 242
Bse1I	ACTGG	1 cut(s)	412
Bse3DI	GCAATG	2 cut(s)	331, 519
BseLI	CCNNNNNNNGG	3 cut(s)	163, 213, 242
BseMI	GCAATG	2 cut(s)	331, 519
BseMII	CTCAG	2 cut(s)	108, 264
BseNI	ACTGG	1 cut(s)	412
BseXI	GCAGC	1 cut(s)	510
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	330
BslI	CCNNNNNNNGG	3 cut(s)	163, 213, 242
BsnI	GGCC	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	299
Bsp68I	TCGCGA	1 cut(s)	74
BspANI	GGCC	1 cut(s)	330
BspCNI	CTCAG	2 cut(s)	109, 265
BspFNI	CGCG	1 cut(s)	74
BspMI	ACCTGC	1 cut(s)	233
BspPI	GGATC	1 cut(s)	307
BsrDI	GCAATG	2 cut(s)	331, 519
BsrI	ACTGG	1 cut(s)	412
BssMI	GATC	1 cut(s)	299
BssSI	CACGAG	1 cut(s)	23
Bst2BI	CACGAG	1 cut(s)	23
Bst6I	CTCTTC	1 cut(s)	478
BstBAI	YACGTR	1 cut(s)	461
BstC8I	GCNNGC	1 cut(s)	361
BstDEI	CTNAG	3 cut(s)	117, 273, 559
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	1 cut(s)	302
BstMBI	GATC	1 cut(s)	299
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstSFI	CTRYAG	1 cut(s)	424
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	510
BstV2I	GAAGAC	1 cut(s)	570
BsuRI	GGCC	1 cut(s)	330
BtgZI	GCGATG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	444
BtuMI	TCGCGA	1 cut(s)	74
BveI	ACCTGC	1 cut(s)	233
Cac8I	GCNNGC	1 cut(s)	361
CaiI	CAGNNNCTG	1 cut(s)	509
CfoI	GCGC	1 cut(s)	195
Csp6I	GTAC	2 cut(s)	153, 202
CviAII	CATG	2 cut(s)	85, 550
CviQI	GTAC	2 cut(s)	153, 202
DdeI	CTNAG	3 cut(s)	117, 273, 559
DpnI	GATC	1 cut(s)	301
DpnII	GATC	1 cut(s)	299
EaeI	YGGCCR	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	478
Eco24I	GRGCYC	1 cut(s)	30
Eco57I	CTGAAG	2 cut(s)	133, 270
Eco72I	CACGTG	1 cut(s)	461
EcoT38I	GRGCYC	1 cut(s)	30
FaeI	CATG	2 cut(s)	88, 553
FaiI	YATR	8 cut(s)	86, 199, 356, 380, 419, 551, 572, 582
FatI	CATG	2 cut(s)	84, 549
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	1 cut(s)	524
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	524
FspBI	CTAG	2 cut(s)	105, 123
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	1 cut(s)	524
HaeIII	GGCC	1 cut(s)	330
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	88, 553
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HinfI	GANTC	6 cut(s)	137, 176, 218, 470, 497, 506
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188III	TCNNGA	4 cut(s)	23, 73, 164, 368
Hpy8I	GTNNAC	1 cut(s)	424
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	2 cut(s)	512, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	3 cut(s)	117, 273, 559
HpySE526I	ACGT	1 cut(s)	460
Hsp92II	CATG	2 cut(s)	88, 553
HspAI	GCGC	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	299
LmnI	GCTCC	1 cut(s)	485
LpnPI	CCDG	7 cut(s)	149, 228, 273, 345, 393, 412, 512
Lsp1109I	GCAGC	1 cut(s)	510
LweI	GCATC	2 cut(s)	68, 287
MaeI	CTAG	2 cut(s)	105, 123
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	3 cut(s)	129, 313, 454
MalI	GATC	1 cut(s)	301
MboI	GATC	1 cut(s)	299
MboII	GAAGA	6 cut(s)	273, 276, 386, 425, 465, 575
MhlI	GDGCHC	1 cut(s)	30
MlsI	TGGCCA	1 cut(s)	330
MluCI	AATT	2 cut(s)	324, 488
MluNI	TGGCCA	1 cut(s)	330
MlyI	GAGTC	4 cut(s)	146, 227, 464, 491
MmeI	TCCRAC	2 cut(s)	465, 507
MnlI	CCTC	3 cut(s)	46, 112, 268
Mox20I	TGGCCA	1 cut(s)	330
MscI	TGGCCA	1 cut(s)	330
MseI	TTAA	2 cut(s)	338, 540
Msp20I	TGGCCA	1 cut(s)	330
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	71
NdeII	GATC	1 cut(s)	299
NlaIII	CATG	2 cut(s)	88, 553
NmeAIII	GCCGAG	1 cut(s)	287
NmuCI	GTSAC	3 cut(s)	129, 313, 454
NruI	TCGCGA	1 cut(s)	74
PfeI	GAWTC	2 cut(s)	176, 506
PkrI	GCNGC	1 cut(s)	525
PleI	GAGTC	4 cut(s)	145, 226, 464, 491
PmaCI	CACGTG	1 cut(s)	461
PmlI	CACGTG	1 cut(s)	461
PpsI	GAGTC	4 cut(s)	145, 226, 464, 491
Ppu21I	YACGTR	1 cut(s)	461
PspCI	CACGTG	1 cut(s)	461
PstNI	CAGNNNCTG	1 cut(s)	509
RruI	TCGCGA	1 cut(s)	74
RsaI	GTAC	2 cut(s)	154, 203
RsaNI	GTAC	2 cut(s)	153, 202
SaqAI	TTAA	2 cut(s)	338, 540
SatI	GCNGC	1 cut(s)	524
Sau3AI	GATC	1 cut(s)	299
SchI	GAGTC	4 cut(s)	146, 227, 464, 491
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	8 cut(s)	38, 67, 118, 247, 393, 463, 482, 557
SfaNI	GCATC	2 cut(s)	68, 287
SfcI	CTRYAG	1 cut(s)	424
Sse9I	AATT	2 cut(s)	324, 488
SspMI	CTAG	2 cut(s)	105, 123
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	1 cut(s)	350
TasI	AATT	2 cut(s)	324, 488
TfiI	GAWTC	2 cut(s)	176, 506
Tru1I	TTAA	2 cut(s)	338, 540
Tru9I	TTAA	2 cut(s)	338, 540
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	3 cut(s)	129, 313, 454
TseI	GCWGC	1 cut(s)	523
Tsp45I	GTSAC	3 cut(s)	129, 313, 454
TspDTI	ATGAA	3 cut(s)	387, 587, 607
TspRI	CASTG	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	2 cut(s)	105, 123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.