Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009623

Physical Location & Seq

Genomic Coordinates Reverse (-)

15706255 .. 15708379

Gene Structure 2125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g13820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGAAGGACTCCATGTTGTGACAACAAGAAGGACTTGAAGAAAGGGCCATGGTCGCCTGAGGAAGATGAGCTTCTTCTGAACTACATCAGCAAGAACCATGGCCACGGAAGCTGGCGTTCTCTTCCCAAGCTTGCAGGTCTTCAACGCTGTGGGAAGAGCTGCCGGCTAAGGTGGATAAATTATCTCAGGCCGGAAATCAAACGAGGCCCCTTCAACAAGGACGAAGAGCAACTCATCATACAGCTTCATGGCATGCTCGGAAACAGGTGGGCTACTATAGCTTCTCAGTTGCCTGGAAGAACTGACAATGAGATCAAGAACTTATGGAACACGCACCTGAGGAAGCGCCTTATCGCCATGGGGATTGATCCACAGACACATGAGCTTCTTGCCTCTAACTGCTTAAATCACAACGCATCTGCTTCCGCGGCCACCCGTCACATGGCACAATGGGAGAGTGCCAGGCTTGAAGCTGAGGCTAGGCTTTCCAGGGAGTCATCACTCTTCAGCCATGCTCCAGAGAAATCTGAGTCTGACCATTTTCTGCGCTTGTGGAACTCCAATGTTGGAAAATCATTCAGAAAGCTTACGTCCGATAAATTTGTGTGCCAAAGCCCCATTTCTCAGGCATCTTCGTCGACCAAATGTGGATTGCTGTCAGCCGTGACAACAGAAGTTGGCAACAACTTAACAGGGTCATCAACCATGGCAGGCAATCAAAATGAAGATTTGGCATACAGACCTTTCTTGATCAACACTGAAGATGTAGAATATAAACCCTTCCAGTTCAACACTGAAGAGGAAGGGTACAAACTCTTCCAGTCCAACACCGAAGCGGGGGAATTCAAGATCTGCCAGTCTAACACTGAAGACAGGATGGCGGGGTCTGTCTCCTCGTGCTCAAATGATTTGGAGAACTCATCGGATACTGCACTACAGCTGCTCCTGGATTACCCAATTAACGATGACATGAGCTTCTTAGAAAACAATGCGGATGACTACGCAACAACCCCTCCGAGGTTGGCGCCCAATTCTTTCATTTGCCCCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048580 GO:0048831 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

352

Amino Acids

39.44

Weight (kDa)

6.03

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 63	4.1e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 78	1.1e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 114	6.8e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	72 - 116	7.2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61250
fragaria_vesca	FvH4_7g13850 FvH4_7g13850 FvH4_7g13850 FvH4_7g13850 FvH4_7g13850
malus_domestica	MD01G1054800.v1.1 MD07G1140400.v1.1
prunus_persica	Prupe.2G164300_v2.0.a1 Prupe.2G164300_v2.0.a1
pyrus_communis	pycom01g08020 pycom07g13820
rosa_chinensis	RchiOBHm_Chr1g0354061
rosa_laevigata	RLG00000028230
rosa_multiflora	Rmu_sc0006777.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301260
rosa_rugosa	Rorug01G0240700
rosa_samantha	Rh1AG251900 Rh1BG223600 Rh1CG236200 Rh1DG250500
rosa_wichuraiana	Rw1G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	1027
AccI	GTMKAC	1 cut(s)	641
AccII	CGCG	1 cut(s)	431
AciI	CCGC	5 cut(s)	429, 431, 839, 884, 995
AclWI	GGATC	1 cut(s)	365
AcoI	YGGCCR	2 cut(s)	103, 432
AcsI	RAATTY	2 cut(s)	602, 845
AcuI	CTGAAG	4 cut(s)	493, 783, 819, 891
AcyI	GRCGYC	1 cut(s)	1028
AfaI	GTAC	1 cut(s)	812
AfiI	CCNNNNNNNGG	3 cut(s)	445, 840, 1020
AgsI	TTSAA	6 cut(s)	40, 146, 217, 473, 793, 850
AjnI	CCWGG	4 cut(s)	295, 464, 491, 948
Alw21I	GWGCWC	1 cut(s)	905
Alw26I	GTCTC	1 cut(s)	898
AlwI	GGATC	1 cut(s)	365
AoxI	GGCC	5 cut(s)	47, 103, 191, 208, 432
ApeKI	GCWGC	2 cut(s)	162, 943
ApoI	RAATTY	2 cut(s)	602, 845
AspLEI	GCGC	3 cut(s)	351, 552, 1030
AspS9I	GGNCC	2 cut(s)	47, 209
AxyI	CCTNAGG	2 cut(s)	60, 341
BalI	TGGCCA	1 cut(s)	105
BanI	GGYRCC	1 cut(s)	1027
BarI	GAAGNNNNNNTAC	2 cut(s)	803, 835
BauI	CACGAG	1 cut(s)	898
BbsI	GAAGAC	2 cut(s)	134, 879
Bbv12I	GWGCWC	1 cut(s)	905
BbvCI	CCTCAGC	1 cut(s)	477
BbvI	GCAGC	2 cut(s)	149, 930
BccI	CCATC	1 cut(s)	874
BceAI	ACGGC	1 cut(s)	650
BcgI	CGANNNNNNTGC	2 cut(s)	621, 655
BciT130I	CCWGG	4 cut(s)	297, 466, 493, 950
BciVI	GTATCC	1 cut(s)	922
BclI	TGATCA	1 cut(s)	753
BcoDI	GTCTC	1 cut(s)	898
BfaI	CTAG	1 cut(s)	483
BfmI	CTRYAG	2 cut(s)	279, 938
BfoI	RGCGCY	2 cut(s)	352, 1031
BfuAI	ACCTGC	1 cut(s)	128
BfuI	GTATCC	1 cut(s)	922
BglII	AGATCT	1 cut(s)	852
BisI	GCNGC	3 cut(s)	163, 432, 944
BlsI	GCNGC	3 cut(s)	164, 433, 945
Bme1390I	CCNGG	4 cut(s)	297, 466, 493, 950
BmgT120I	GGNCC	2 cut(s)	47, 209
BmiI	GGNNCC	2 cut(s)	211, 1029
BmrFI	CCNGG	4 cut(s)	297, 466, 493, 950
BmsI	GCATC	2 cut(s)	428, 641
BpiI	GAAGAC	2 cut(s)	134, 879
BpmI	CTGGAG	1 cut(s)	504
Bpu10I	CCTNAGC	2 cut(s)	170, 477
BsaHI	GRCGYC	1 cut(s)	1028
BsaJI	CCNNGG	8 cut(s)	50, 100, 106, 360, 429, 492, 708, 1019
BsaXI	ACNNNNNCTCC	4 cut(s)	930, 960, 1000, 1030
Bsc4I	CCNNNNNNNGG	3 cut(s)	445, 840, 1020
Bse118I	RCCGGY	1 cut(s)	165
Bse1I	ACTGG	3 cut(s)	787, 823, 859
Bse21I	CCTNAGG	2 cut(s)	60, 341
BseBI	CCWGG	4 cut(s)	297, 466, 493, 950
BseDI	CCNNGG	8 cut(s)	50, 100, 106, 360, 429, 492, 708, 1019
BseGI	GGATG	2 cut(s)	885, 1003
BseLI	CCNNNNNNNGG	3 cut(s)	445, 840, 1020
BseMII	CTCAG	7 cut(s)	51, 202, 302, 332, 468, 522, 641
BseNI	ACTGG	3 cut(s)	787, 823, 859
BseRI	GAGGAG	1 cut(s)	886
BseXI	GCAGC	2 cut(s)	149, 930
BsgI	GTGCAG	1 cut(s)	918
Bsh1236I	CGCG	1 cut(s)	431
BshFI	GGCC	5 cut(s)	49, 105, 193, 210, 434
BshNI	GGYRCC	1 cut(s)	1027
BsiHKAI	GWGCWC	1 cut(s)	905
BsiSI	CCGG	2 cut(s)	166, 194
BslI	CCNNNNNNNGG	3 cut(s)	445, 840, 1020
BsmAI	GTCTC	1 cut(s)	898
BsnI	GGCC	5 cut(s)	49, 105, 193, 210, 434
Bsp1286I	GDGCHC	1 cut(s)	905
Bsp143I	GATC	4 cut(s)	315, 370, 753, 852
Bsp19I	CCATGG	4 cut(s)	50, 100, 360, 708
BspACI	CCGC	5 cut(s)	429, 431, 839, 884, 995
BspANI	GGCC	5 cut(s)	49, 105, 193, 210, 434
BspCNI	CTCAG	7 cut(s)	52, 201, 301, 333, 469, 523, 640
BspFNI	CGCG	1 cut(s)	431
BspLI	GGNNCC	2 cut(s)	211, 1029
BspMI	ACCTGC	1 cut(s)	128
BspPI	GGATC	1 cut(s)	365
BspQI	GCTCTTC	2 cut(s)	152, 222
BspT107I	GGYRCC	1 cut(s)	1027
BsrFI	RCCGGY	1 cut(s)	165
BsrI	ACTGG	3 cut(s)	787, 823, 859
BssAI	RCCGGY	1 cut(s)	165
BssECI	CCNNGG	8 cut(s)	50, 100, 106, 360, 429, 492, 708, 1019
BssMI	GATC	4 cut(s)	315, 370, 753, 852
BssNI	GRCGYC	1 cut(s)	1028
BssSI	CACGAG	1 cut(s)	898
BssT1I	CCWWGG	4 cut(s)	50, 100, 360, 708
Bst2BI	CACGAG	1 cut(s)	898
Bst2UI	CCWGG	4 cut(s)	297, 466, 493, 950
Bst6I	CTCTTC	6 cut(s)	129, 152, 222, 512, 795, 824
BstACI	GRCGYC	1 cut(s)	1028
BstC8I	GCNNGC	5 cut(s)	116, 135, 167, 257, 715
BstDEI	CTNAG	9 cut(s)	60, 170, 188, 288, 341, 477, 531, 627, 982
BstDSI	CCRYGG	6 cut(s)	50, 100, 106, 360, 429, 708
BstF5I	GGATG	2 cut(s)	885, 1003
BstFNI	CGCG	1 cut(s)	431
BstH2I	RGCGCY	2 cut(s)	352, 1031
BstHHI	GCGC	3 cut(s)	351, 552, 1030
BstKTI	GATC	4 cut(s)	318, 373, 756, 855
BstMAI	GTCTC	1 cut(s)	898
BstMBI	GATC	4 cut(s)	315, 370, 753, 852
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 111, 281, 431
BstNI	CCWGG	4 cut(s)	297, 466, 493, 950
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	4 cut(s)	295, 464, 491, 948
BstSFI	CTRYAG	2 cut(s)	279, 938
BstUI	CGCG	1 cut(s)	431
BstV1I	GCAGC	2 cut(s)	149, 930
BstV2I	GAAGAC	2 cut(s)	134, 879
BstX2I	RGATCY	1 cut(s)	852
BstYI	RGATCY	1 cut(s)	852
Bsu36I	CCTNAGG	2 cut(s)	60, 341
BsuI	GTATCC	1 cut(s)	922
BsuRI	GGCC	5 cut(s)	49, 105, 193, 210, 434
BtgI	CCRYGG	6 cut(s)	50, 100, 106, 360, 429, 708
BtsCI	GGATG	2 cut(s)	885, 1003
BtsIMutI	CAGTG	3 cut(s)	759, 795, 867
BveI	ACCTGC	1 cut(s)	128
Cac8I	GCNNGC	5 cut(s)	116, 135, 167, 257, 715
CfoI	GCGC	3 cut(s)	351, 552, 1030
Cfr10I	RCCGGY	1 cut(s)	165
Cfr13I	GGNCC	2 cut(s)	47, 209
Cfr42I	CCGCGG	1 cut(s)	432
Csp6I	GTAC	1 cut(s)	811
CviQI	GTAC	1 cut(s)	811
DdeI	CTNAG	9 cut(s)	60, 170, 188, 288, 341, 477, 531, 627, 982
DinI	GGCGCC	1 cut(s)	1029
DpnI	GATC	4 cut(s)	317, 372, 755, 854
DpnII	GATC	4 cut(s)	315, 370, 753, 852
EaeI	YGGCCR	2 cut(s)	103, 432
Eam1104I	CTCTTC	6 cut(s)	129, 152, 222, 512, 795, 824
EarI	CTCTTC	6 cut(s)	129, 152, 222, 512, 795, 824
Eco130I	CCWWGG	4 cut(s)	50, 100, 360, 708
Eco57I	CTGAAG	4 cut(s)	493, 783, 819, 891
Eco81I	CCTNAGG	2 cut(s)	60, 341
EcoO109I	RGGNCCY	1 cut(s)	209
EcoRI	GAATTC	1 cut(s)	845
EcoRII	CCWGG	4 cut(s)	295, 464, 491, 948
EcoT14I	CCWWGG	4 cut(s)	50, 100, 360, 708
EgeI	GGCGCC	1 cut(s)	1029
EheI	GGCGCC	1 cut(s)	1029
ErhI	CCWWGG	4 cut(s)	50, 100, 360, 708
FalI	AAGNNNNNCTT	4 cut(s)	20, 52, 57, 89
FauI	CCCGC	2 cut(s)	832, 877
FbaI	TGATCA	1 cut(s)	753
FblI	GTMKAC	1 cut(s)	641
Fnu4HI	GCNGC	3 cut(s)	163, 432, 944
FokI	GGATG	2 cut(s)	892, 1010
Fsp4HI	GCNGC	3 cut(s)	163, 432, 944
FspBI	CTAG	1 cut(s)	483
GlaI	GCGC	3 cut(s)	350, 551, 1029
GluI	GCNGC	3 cut(s)	163, 432, 944
GsuI	CTGGAG	1 cut(s)	504
HaeII	RGCGCY	2 cut(s)	352, 1031
HaeIII	GGCC	5 cut(s)	49, 105, 193, 210, 434
HapII	CCGG	2 cut(s)	166, 194
HhaI	GCGC	3 cut(s)	351, 552, 1030
Hin1I	GRCGYC	1 cut(s)	1028
Hin6I	GCGC	3 cut(s)	349, 550, 1028
HinP1I	GCGC	3 cut(s)	349, 550, 1028
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HindIII	AAGCTT	2 cut(s)	131, 587
HinfI	GANTC	3 cut(s)	10, 497, 533
HpaII	CCGG	2 cut(s)	166, 194
Hpy166II	GTNNAC	1 cut(s)	642
Hpy188I	TCNGA	9 cut(s)	81, 263, 532, 538, 584, 598, 928, 1020, 1055
Hpy188III	TCNNGA	4 cut(s)	319, 521, 751, 850
Hpy8I	GTNNAC	1 cut(s)	642
Hpy99I	CGWCG	1 cut(s)	643
HpyAV	CCTTC	4 cut(s)	25, 223, 793, 800
HpyCH4IV	ACGT	1 cut(s)	593
HpyCH4V	TGCA	2 cut(s)	137, 935
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 111, 281, 431
HpyF3I	CTNAG	9 cut(s)	60, 170, 188, 288, 341, 477, 531, 627, 982
HpySE526I	ACGT	1 cut(s)	593
Hsp92I	GRCGYC	1 cut(s)	1028
HspAI	GCGC	3 cut(s)	349, 550, 1028
KasI	GGCGCC	1 cut(s)	1027
KroI	GCCGGC	1 cut(s)	165
KroNI	GCCGGC	1 cut(s)	167
Ksp22I	TGATCA	1 cut(s)	753
KspI	CCGCGG	1 cut(s)	432
Kzo9I	GATC	4 cut(s)	315, 370, 753, 852
LguI	GCTCTTC	2 cut(s)	152, 222
LmnI	GCTCC	2 cut(s)	523, 951
Lsp1109I	GCAGC	2 cut(s)	149, 930
LweI	GCATC	2 cut(s)	428, 641
MaeI	CTAG	1 cut(s)	483
MaeII	ACGT	1 cut(s)	593
MaeIII	GTNAC	3 cut(s)	20, 440, 667
MalI	GATC	4 cut(s)	317, 372, 755, 854
MboI	GATC	4 cut(s)	315, 370, 753, 852
MflI	RGATCY	1 cut(s)	852
MhlI	GDGCHC	1 cut(s)	905
MlsI	TGGCCA	1 cut(s)	105
MluCI	AATT	5 cut(s)	181, 602, 845, 960, 1033
MluNI	TGGCCA	1 cut(s)	105
Mly113I	GGCGCC	1 cut(s)	1028
MlyI	GAGTC	3 cut(s)	4, 506, 542
MmeI	TCCRAC	2 cut(s)	550, 852
MnlI	CCTC	9 cut(s)	55, 200, 336, 406, 472, 796, 907, 1014, 1026
Mox20I	TGGCCA	1 cut(s)	105
MroNI	GCCGGC	1 cut(s)	165
MscI	TGGCCA	1 cut(s)	105
MseI	TTAA	3 cut(s)	407, 692, 963
Msp20I	TGGCCA	1 cut(s)	105
MspA1I	CMGCKG	2 cut(s)	431, 943
MspI	CCGG	2 cut(s)	166, 194
MspR9I	CCNGG	4 cut(s)	297, 466, 493, 950
MvaI	CCWGG	4 cut(s)	297, 466, 493, 950
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	4 cut(s)	55, 111, 281, 431
NaeI	GCCGGC	1 cut(s)	167
NarI	GGCGCC	1 cut(s)	1028
NcoI	CCATGG	4 cut(s)	50, 100, 360, 708
NdeII	GATC	4 cut(s)	315, 370, 753, 852
NgoMIV	GCCGGC	1 cut(s)	165
NlaIV	GGNNCC	2 cut(s)	211, 1029
NmuCI	GTSAC	3 cut(s)	20, 440, 667
NspI	RCATGY	1 cut(s)	259
PaeI	GCATGC	1 cut(s)	259
PciSI	GCTCTTC	2 cut(s)	152, 222
PdiI	GCCGGC	1 cut(s)	167
PfoI	TCCNGGA	1 cut(s)	948
PkrI	GCNGC	3 cut(s)	164, 433, 945
PleI	GAGTC	3 cut(s)	4, 505, 541
PluTI	GGCGCC	1 cut(s)	1031
PpsI	GAGTC	3 cut(s)	4, 505, 541
Psp6I	CCWGG	4 cut(s)	295, 464, 491, 948
PspGI	CCWGG	4 cut(s)	295, 464, 491, 948
PspN4I	GGNNCC	2 cut(s)	211, 1029
PspPI	GGNCC	2 cut(s)	47, 209
PsuI	RGATCY	1 cut(s)	852
PvuII	CAGCTG	1 cut(s)	943
RsaI	GTAC	1 cut(s)	812
RsaNI	GTAC	1 cut(s)	811
SacII	CCGCGG	1 cut(s)	432
SalI	GTCGAC	1 cut(s)	640
SapI	GCTCTTC	2 cut(s)	152, 222
SaqAI	TTAA	3 cut(s)	407, 692, 963
SatI	GCNGC	3 cut(s)	163, 432, 944
Sau3AI	GATC	4 cut(s)	315, 370, 753, 852
Sau96I	GGNCC	2 cut(s)	47, 209
SchI	GAGTC	3 cut(s)	4, 506, 542
ScrFI	CCNGG	4 cut(s)	297, 466, 493, 950
SduI	GDGCHC	1 cut(s)	905
SfaNI	GCATC	2 cut(s)	428, 641
SfcI	CTRYAG	2 cut(s)	279, 938
SfoI	GGCGCC	1 cut(s)	1029
Sfr303I	CCGCGG	1 cut(s)	432
SgrBI	CCGCGG	1 cut(s)	432
SphI	GCATGC	1 cut(s)	259
Sse9I	AATT	5 cut(s)	181, 602, 845, 960, 1033
SsiI	CCGC	5 cut(s)	429, 431, 839, 884, 995
SspDI	GGCGCC	1 cut(s)	1027
SspMI	CTAG	1 cut(s)	483
StyD4I	CCNGG	4 cut(s)	295, 464, 491, 948
StyI	CCWWGG	4 cut(s)	50, 100, 360, 708
TaiI	ACGT	1 cut(s)	596
TaqI	TCGA	1 cut(s)	641
TasI	AATT	5 cut(s)	181, 602, 845, 960, 1033
TauI	GCSGC	1 cut(s)	434
Tru1I	TTAA	3 cut(s)	407, 692, 963
Tru9I	TTAA	3 cut(s)	407, 692, 963
TscAI	CASTG	3 cut(s)	766, 802, 874
TseFI	GTSAC	3 cut(s)	20, 440, 667
TseI	GCWGC	2 cut(s)	162, 943
Tsp45I	GTSAC	3 cut(s)	20, 440, 667
TspDTI	ATGAA	3 cut(s)	239, 741, 1030
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	3 cut(s)	766, 802, 874
XapI	RAATTY	2 cut(s)	602, 845
XceI	RCATGY	1 cut(s)	259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XmiI	GTMKAC	1 cut(s)	641
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.