Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0009623

Physical Location & Seq

Genomic Coordinates Forward (+)

46431935 .. 46432213

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG250500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCAGGCAATCAAGATGAAGATATAGAATACAAGGTTTTCAAGTCCATTACTGGTGAAGATATGGTCTACAGGATTTACAAGTCCAACACTGAAAATGTGACACGTGGTTCTGACTCTTCAAGCTCCAACAAATTAGATGACTCGTCAGAATCTGCAATGGATTTGCTGCTGGATTACCCCATTAACAATGACATGAGCTTCTTAGAAGACAATATGAATGACTATGCAACAAGCACTTCTGCCAAGTTAGAAAATGCTTTCATTTGCCCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048580 GO:0048831 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

92

Amino Acids

10.33

Weight (kDa)

4.05

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0009623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61250
fragaria_vesca	FvH4_7g13850 FvH4_7g13850 FvH4_7g13850 FvH4_7g13850 FvH4_7g13850
malus_domestica	MD01G1054800.v1.1 MD07G1140400.v1.1
prunus_persica	Prupe.2G164300_v2.0.a1 Prupe.2G164300_v2.0.a1
pyrus_communis	pycom01g08020 pycom07g13820
rosa_chinensis	RchiOBHm_Chr1g0354061
rosa_laevigata	RLG00000028230
rosa_multiflora	Rmu_sc0006777.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301260
rosa_rugosa	Rorug01G0240700
rosa_samantha	Rh1AG251900 Rh1BG223600 Rh1CG236200 Rh1DG250500
rosa_wichuraiana	Rw1G021960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	69
AcvI	CACGTG	1 cut(s)	107
AflIII	ACRYGT	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	43, 123
AluBI	AGCT	2 cut(s)	126, 201
AluI	AGCT	2 cut(s)	126, 201
AlwNI	CAGNNNCTG	1 cut(s)	155
ApeKI	GCWGC	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	68
BbrPI	CACGTG	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	70
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	216
BsaAI	YACGTR	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	58
Bse3DI	GCAATG	1 cut(s)	165
BseMI	GCAATG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	124
BstBAI	YACGTR	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	205
BstSFI	CTRYAG	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	155
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	2 cut(s)	126, 201
CviKI_1	RGCY	2 cut(s)	126, 201
DdeI	CTNAG	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco72I	CACGTG	1 cut(s)	107
FaeI	CATG	1 cut(s)	199
FaiI	YATR	5 cut(s)	26, 65, 197, 218, 228
FatI	CATG	1 cut(s)	195
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	170
GluI	GCNGC	1 cut(s)	170
Hin1II	CATG	1 cut(s)	199
HinfI	GANTC	3 cut(s)	116, 143, 152
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	3 cut(s)	115, 151, 278
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	158, 230
HpyF3I	CTNAG	1 cut(s)	205
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	3 cut(s)	39, 58, 158
Lsp1109I	GCAGC	1 cut(s)	156
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	100
MboII	GAAGA	4 cut(s)	32, 71, 111, 221
MluCI	AATT	1 cut(s)	134
MlyI	GAGTC	2 cut(s)	110, 137
MmeI	TCCRAC	2 cut(s)	111, 153
MseI	TTAA	1 cut(s)	186
NlaIII	CATG	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	152
PkrI	GCNGC	1 cut(s)	171
PleI	GAGTC	2 cut(s)	110, 137
PmaCI	CACGTG	1 cut(s)	107
PmlI	CACGTG	1 cut(s)	107
PpsI	GAGTC	2 cut(s)	110, 137
Ppu21I	YACGTR	1 cut(s)	107
PspCI	CACGTG	1 cut(s)	107
PstNI	CAGNNNCTG	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	1 cut(s)	170
SchI	GAGTC	2 cut(s)	110, 137
SetI	ASST	4 cut(s)	39, 109, 128, 203
SfcI	CTRYAG	1 cut(s)	70
Sse9I	AATT	1 cut(s)	134
TaiI	ACGT	1 cut(s)	109
TasI	AATT	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	3 cut(s)	33, 233, 253
TspRI	CASTG	1 cut(s)	97
XmiI	GTMKAC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.