Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005870

Physical Location & Seq

Genomic Coordinates Reverse (-)

13042587 .. 13043096

Gene Structure 510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g14900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGGATTCCCAGGTTACACAGAGGTCCTCTTCCCCAACCTCTTCCTCCACACCCTCTCTCTTTTGGGTTTCATCCGCAGCCTCATTTTCTCGCTCTTTCATTTCTTGGGTCTTTCCGATTTCCTCGACACCGACGCGAGCGTGTGGCCTGAGACCCGGACACATCTGCTGTCCGGGTGTCAGACGCCAGCGTCGGTGCTTCTGATGCGGGAATTCCTTCCCGTGATCAGGTTCGAAGAGATTGAAGGAGACACGCCGGAGAGCTGCGCCGTCTGCCTGTACGAGTTCGAGGGCAGCGAGGAGATCAGGTGTTTGCCGAATTGCAAGCACATTTTTCACCGGGCGTGTGTGGACCGTTGGATGGACCACGACCAGAAGACGTGTCCGCTTTGCCGGACGGCGTTCGTGCCTGATGAGGCCAGCGAGGAGTTTAATAAACGGCTCTGGGCCGCCGCCGTTGCCGAGTCGGAGCTGGAGATGGAGTTCCACCGTGATTTTTACGGCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046686 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

170

Amino Acids

19.52

Weight (kDa)

4.75

Isoelectric Point (pI)

51.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	88 - 132	1.1e-12	Ring finger domain
zf-RING_11	PF17123	89 - 117	5.4e-09	RING-like zinc finger
zf-C3HC4	PF00097	89 - 131	2.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	89 - 133	1.9e-06	zinc-RING finger domain
zf-C3HC4_2	PF13923	89 - 131	3e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	98 - 132	3.5e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61460
fragaria_vesca	FvH4_5g02880 FvH4_7g14900
malus_domestica	MD01G1067800.v1.1 MD06G1088300.v1.1 MD07G1133100.v1.1 MD14G1109400.v1.1
prunus_persica	Prupe.2G174100_v2.0.a1 Prupe.5G104300_v2.0.a1
pyrus_communis	pycom14g10350
rosa_chinensis	RchiOBHm_Chr1g0356851 RchiOBHm_Chr7g0197001
rosa_laevigata	RLG00000003966 RLG00000028076
rosa_multiflora	Rmu_sc0003248.1_g000003
rosa_roxburghii	Rroxscaffold_3G00258740 Rroxscaffold_4G00299260
rosa_rugosa	Rorug07G0037000
rosa_samantha	Rh1AG266300 Rh1BG233700 Rh1CG249800 Rh1DG261100 Rh7AG162000 Rh7BG163900 Rh7CG170100 Rh7DG163200
rosa_wichuraiana	Rw1G023530 Rw7G014140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	190
AccII	CGCG	1 cut(s)	137
AciI	CCGC	5 cut(s)	76, 208, 386, 450, 453
AcsI	RAATTY	1 cut(s)	212
AcyI	GRCGYC	1 cut(s)	185
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	2 cut(s)	228, 361
AflIII	ACRYGT	1 cut(s)	380
AgsI	TTSAA	1 cut(s)	245
AjiI	CACGTC	1 cut(s)	381
AjnI	CCWGG	1 cut(s)	10
AloI	GAACNNNNNNTCC	2 cut(s)	467, 499
AluBI	AGCT	2 cut(s)	264, 472
AluI	AGCT	2 cut(s)	264, 472
Alw26I	GTCTC	2 cut(s)	146, 243
AoxI	GGCC	3 cut(s)	146, 417, 447
ApeKI	GCWGC	3 cut(s)	78, 264, 294
ApoI	RAATTY	1 cut(s)	212
Asp700I	GAANNNNTTC	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	4 cut(s)	25, 352, 364, 447
AsuC2I	CCSGG	3 cut(s)	157, 175, 341
AsuHPI	GGTGA	1 cut(s)	329
AsuII	TTCGAA	1 cut(s)	234
AvaII	GGWCC	3 cut(s)	25, 352, 364
BbsI	GAAGAC	1 cut(s)	383
BbvI	GCAGC	3 cut(s)	90, 251, 306
BccI	CCATC	2 cut(s)	355, 472
BceAI	ACGGC	4 cut(s)	254, 414, 440, 455
BciT130I	CCWGG	1 cut(s)	12
BclI	TGATCA	1 cut(s)	225
BcnI	CCSGG	3 cut(s)	157, 175, 341
BcoDI	GTCTC	2 cut(s)	146, 243
BisI	GCNGC	5 cut(s)	79, 265, 295, 450, 453
BlsI	GCNGC	5 cut(s)	80, 266, 296, 451, 454
Bme1390I	CCNGG	4 cut(s)	12, 157, 175, 341
Bme18I	GGWCC	3 cut(s)	25, 352, 364
BmgBI	CACGTC	1 cut(s)	381
BmgT120I	GGNCC	4 cut(s)	25, 352, 364, 447
BmrFI	CCNGG	4 cut(s)	12, 157, 175, 341
BmsI	GCATC	1 cut(s)	195
BpiI	GAAGAC	1 cut(s)	383
BpmI	CTGGAG	1 cut(s)	494
Bpu14I	TTCGAA	1 cut(s)	234
BpuMI	CCSGG	3 cut(s)	157, 175, 341
BsaHI	GRCGYC	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	10
BsaXI	ACNNNNNCTCC	4 cut(s)	293, 323, 467, 497
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 361
BseBI	CCWGG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	2 cut(s)	72, 366
BseLI	CCNNNNNNNGG	2 cut(s)	228, 361
BseMII	CTCAG	1 cut(s)	141
BseRI	GAGGAG	2 cut(s)	314, 440
BseXI	GCAGC	3 cut(s)	90, 251, 306
Bsh1236I	CGCG	1 cut(s)	137
BshFI	GGCC	3 cut(s)	148, 419, 449
BsiSI	CCGG	5 cut(s)	157, 174, 257, 340, 394
BslI	CCNNNNNNNGG	2 cut(s)	228, 361
BsmAI	GTCTC	2 cut(s)	146, 243
BsnI	GGCC	3 cut(s)	148, 419, 449
Bso31I	GGTCTC	1 cut(s)	146
Bsp119I	TTCGAA	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	225, 303
BspACI	CCGC	5 cut(s)	76, 208, 386, 450, 453
BspANI	GGCC	3 cut(s)	148, 419, 449
BspCNI	CTCAG	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	137
BspT104I	TTCGAA	1 cut(s)	234
BspTNI	GGTCTC	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	2 cut(s)	225, 303
BssNI	GRCGYC	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	12
Bst4CI	ACNGT	2 cut(s)	356, 491
Bst6I	CTCTTC	3 cut(s)	35, 47, 231
BstACI	GRCGYC	1 cut(s)	185
BstBI	TTCGAA	1 cut(s)	234
BstC8I	GCNNGC	4 cut(s)	139, 189, 326, 421
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	72, 366
BstFNI	CGCG	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	2 cut(s)	228, 306
BstMAI	GTCTC	2 cut(s)	146, 243
BstMBI	GATC	2 cut(s)	225, 303
BstMWI	GCNNNNNNNGC	3 cut(s)	205, 273, 458
BstNI	CCWGG	1 cut(s)	12
BstSCI	CCNGG	4 cut(s)	10, 155, 173, 339
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	3 cut(s)	90, 251, 306
BstV2I	GAAGAC	1 cut(s)	383
BsuRI	GGCC	3 cut(s)	148, 419, 449
BtrI	CACGTC	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	72, 366
Cac8I	GCNNGC	4 cut(s)	139, 189, 326, 421
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	4 cut(s)	25, 352, 364, 447
CseI	GACGC	3 cut(s)	143, 180, 193
Csp6I	GTAC	1 cut(s)	280
CviJI	RGCY	7 cut(s)	81, 148, 264, 419, 442, 449, 472
CviKI_1	RGCY	7 cut(s)	81, 148, 264, 419, 442, 449, 472
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	2 cut(s)	227, 305
DpnII	GATC	2 cut(s)	225, 303
DrdI	GACNNNNNNGTC	1 cut(s)	190
DseDI	GACNNNNNNGTC	1 cut(s)	190
Eam1104I	CTCTTC	3 cut(s)	35, 47, 231
EarI	CTCTTC	3 cut(s)	35, 47, 231
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	3 cut(s)	25, 352, 364
EcoO109I	RGGNCCY	1 cut(s)	25
EcoRI	GAATTC	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	10
FauI	CCCGC	1 cut(s)	201
FbaI	TGATCA	1 cut(s)	225
Fnu4HI	GCNGC	5 cut(s)	79, 265, 295, 450, 453
FokI	GGATG	2 cut(s)	59, 373
Fsp4HI	GCNGC	5 cut(s)	79, 265, 295, 450, 453
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	5 cut(s)	79, 265, 295, 450, 453
GsuI	CTGGAG	1 cut(s)	494
HaeIII	GGCC	3 cut(s)	148, 419, 449
HapII	CCGG	5 cut(s)	157, 174, 257, 340, 394
HgaI	GACGC	3 cut(s)	143, 180, 193
HhaI	GCGC	1 cut(s)	269
Hin1I	GRCGYC	1 cut(s)	185
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HinfI	GANTC	2 cut(s)	6, 464
HpaII	CCGG	5 cut(s)	157, 174, 257, 340, 394
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	4 cut(s)	118, 183, 204, 469
Hpy8I	GTNNAC	1 cut(s)	352
Hpy99I	CGWCG	2 cut(s)	137, 196
HpyAV	CCTTC	2 cut(s)	227, 239
HpyCH4III	ACNGT	2 cut(s)	356, 491
HpyCH4IV	ACGT	1 cut(s)	380
HpyCH4V	TGCA	1 cut(s)	324
HpyF10VI	GCNNNNNNNGC	3 cut(s)	205, 273, 458
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	1 cut(s)	380
Hsp92I	GRCGYC	1 cut(s)	185
HspAI	GCGC	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	225, 303
LmnI	GCTCC	1 cut(s)	469
Lsp1109I	GCAGC	3 cut(s)	90, 251, 306
LweI	GCATC	1 cut(s)	195
MaeII	ACGT	1 cut(s)	380
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	2 cut(s)	227, 305
MboI	GATC	2 cut(s)	225, 303
MboII	GAAGA	4 cut(s)	22, 34, 248, 388
MluCI	AATT	2 cut(s)	212, 319
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	2 cut(s)	338, 447
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	1 cut(s)	432
MspI	CCGG	5 cut(s)	157, 174, 257, 340, 394
MspR9I	CCNGG	4 cut(s)	12, 157, 175, 341
MvaI	CCWGG	1 cut(s)	12
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	3 cut(s)	205, 273, 458
NciI	CCSGG	3 cut(s)	157, 175, 341
NdeII	GATC	2 cut(s)	225, 303
NmeAIII	GCCGAG	1 cut(s)	487
NspV	TTCGAA	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	6
PkrI	GCNGC	5 cut(s)	80, 266, 296, 451, 454
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
PpuMI	RGGWCCY	1 cut(s)	25
Psp5II	RGGWCCY	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	10
PspPI	GGNCC	4 cut(s)	25, 352, 364, 447
PspPPI	RGGWCCY	1 cut(s)	25
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	5 cut(s)	79, 265, 295, 450, 453
Sau3AI	GATC	2 cut(s)	225, 303
Sau96I	GGNCC	4 cut(s)	25, 352, 364, 447
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	4 cut(s)	12, 157, 175, 341
SetI	ASST	8 cut(s)	16, 27, 42, 233, 266, 311, 383, 474
SfaNI	GCATC	1 cut(s)	195
SfuI	TTCGAA	1 cut(s)	234
SinI	GGWCC	3 cut(s)	25, 352, 364
Sse9I	AATT	2 cut(s)	212, 319
SsiI	CCGC	5 cut(s)	76, 208, 386, 450, 453
StyD4I	CCNGG	4 cut(s)	10, 155, 173, 339
TaaI	ACNGT	2 cut(s)	356, 491
TaiI	ACGT	1 cut(s)	383
TaqI	TCGA	3 cut(s)	126, 234, 288
TasI	AATT	2 cut(s)	212, 319
TauI	GCSGC	2 cut(s)	452, 455
TfiI	GAWTC	1 cut(s)	6
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TseI	GCWGC	3 cut(s)	78, 264, 294
TspDTI	ATGAA	2 cut(s)	61, 89
VpaK11BI	GGWCC	3 cut(s)	25, 352, 364
XapI	RAATTY	1 cut(s)	212
XmnI	GAANNNNTTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.