Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0005870

Physical Location & Seq

Genomic Coordinates Reverse (-)

17199174 .. 17199677

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1109400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGGGTTCCCAGTTGGGTACACACAGCTTCTGCTCCCAAAGCTCTTCATCCAAACACTCTCTCTGCTGGGTCTAATCCAAAAACTCATCTCCGCCTTCGTCTCCCTGCTGGGTCTCCAATATTTCATCGAACAGGACAATGCCTGGTCCGACCCGCCGGCCAGATTCCCGGAGTTCTACTCCGTCTCCGCGGTTCTGATCCGGGAAATCCTGCCGCTGGCGAAGTTCTCGGACCTGGTGGACCCGCCGGAGTCGTGCGCCGTGTGCCTGTACGAGTTCGAGGGCGAGGACGAGATACGACGGCTCACGAATTGTCGTCACGTCTTCCACAAAGGGTGCGTGGACCGGTGGGTCGGGTACGACCAGAAGACGTGCCCGCTGTGTCGTACGCCGTTCATATCGGAGGATATGCAGGGCGATTTCAATGAGAGGCTTTGGGCCGCTACTGGGATCCCTGATTTTTACGGTGATTATTCTCACACTAATCTTGGCTTTGAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046686 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

168

Amino Acids

19.1

Weight (kDa)

4.69

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	85 - 129	3.2e-13	Ring finger domain
zf-RING_11	PF17123	86 - 114	8.5e-09	RING-like zinc finger
zf-C3HC4	PF00097	86 - 128	2.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	86 - 130	3.7e-07	zinc-RING finger domain
zf-C3HC4_2	PF13923	86 - 128	5.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	86 - 126	3e-06	RING-type zinc-finger
zf-rbx1	PF12678	93 - 129	9.6e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61460
fragaria_vesca	FvH4_5g02880 FvH4_7g14900
malus_domestica	MD01G1067800.v1.1 MD06G1088300.v1.1 MD07G1133100.v1.1 MD14G1109400.v1.1
prunus_persica	Prupe.2G174100_v2.0.a1 Prupe.5G104300_v2.0.a1
pyrus_communis	pycom14g10350
rosa_chinensis	RchiOBHm_Chr1g0356851 RchiOBHm_Chr7g0197001
rosa_laevigata	RLG00000003966 RLG00000028076
rosa_multiflora	Rmu_sc0003248.1_g000003
rosa_roxburghii	Rroxscaffold_3G00258740 Rroxscaffold_4G00299260
rosa_rugosa	Rorug07G0037000
rosa_samantha	Rh1AG266300 Rh1BG233700 Rh1CG249800 Rh1DG261100 Rh7AG162000 Rh7BG163900 Rh7CG170100 Rh7DG163200
rosa_wichuraiana	Rw1G023530 Rw7G014140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	350
AccII	CGCG	1 cut(s)	191
AciI	CCGC	8 cut(s)	93, 155, 189, 191, 215, 245, 377, 441
AclWI	GGATC	3 cut(s)	193, 445, 458
AcoI	YGGCCR	1 cut(s)	159
AfaI	GTAC	4 cut(s)	20, 272, 359, 388
AfiI	CCNNNNNNNGG	2 cut(s)	217, 447
AgeI	ACCGGT	1 cut(s)	345
AgsI	TTSAA	2 cut(s)	424, 497
AjiI	CACGTC	2 cut(s)	322, 372
AjnI	CCWGG	2 cut(s)	143, 234
AluBI	AGCT	2 cut(s)	28, 43
AluI	AGCT	2 cut(s)	28, 43
Alw26I	GTCTC	3 cut(s)	106, 119, 190
AlwI	GGATC	3 cut(s)	193, 445, 458
AlwNI	CAGNNNCTG	1 cut(s)	31
AoxI	GGCC	2 cut(s)	159, 438
AsiGI	ACCGGT	1 cut(s)	345
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	5 cut(s)	147, 232, 241, 343, 438
AsuC2I	CCSGG	2 cut(s)	170, 203
AsuHPI	GGTGA	1 cut(s)	479
AvaII	GGWCC	4 cut(s)	147, 232, 241, 343
BaeGI	GKGCMC	1 cut(s)	377
BamHI	GGATCC	1 cut(s)	450
BbsI	GAAGAC	2 cut(s)	316, 374
BceAI	ACGGC	3 cut(s)	245, 317, 376
BciT130I	CCWGG	2 cut(s)	145, 236
BcnI	CCSGG	2 cut(s)	170, 203
BcoDI	GTCTC	3 cut(s)	106, 119, 190
BisI	GCNGC	2 cut(s)	215, 441
BlsI	GCNGC	2 cut(s)	216, 442
Bme1390I	CCNGG	4 cut(s)	145, 170, 203, 236
Bme18I	GGWCC	4 cut(s)	147, 232, 241, 343
BmgBI	CACGTC	2 cut(s)	322, 372
BmgT120I	GGNCC	5 cut(s)	147, 232, 241, 343, 438
BmiI	GGNNCC	3 cut(s)	8, 243, 452
BmrFI	CCNGG	4 cut(s)	145, 170, 203, 236
BmrI	ACTGGG	2 cut(s)	5, 456
BmuI	ACTGGG	2 cut(s)	5, 456
BpiI	GAAGAC	2 cut(s)	316, 374
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BpuMI	CCSGG	2 cut(s)	170, 203
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	345
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 447
Bse118I	RCCGGY	2 cut(s)	157, 345
Bse1I	ACTGG	2 cut(s)	11, 451
BseBI	CCWGG	2 cut(s)	145, 236
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	217, 447
BseNI	ACTGG	2 cut(s)	11, 451
BseSI	GKGCMC	1 cut(s)	377
BseYI	CCCAGC	2 cut(s)	67, 109
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	2 cut(s)	161, 440
BshTI	ACCGGT	1 cut(s)	345
BsiSI	CCGG	5 cut(s)	158, 170, 202, 248, 346
BsiWI	CGTACG	1 cut(s)	386
BslI	CCNNNNNNNGG	2 cut(s)	217, 447
BsmAI	GTCTC	3 cut(s)	106, 119, 190
BsmBI	CGTCTC	2 cut(s)	106, 190
BsnI	GGCC	2 cut(s)	161, 440
Bso31I	GGTCTC	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	377
Bsp143I	GATC	2 cut(s)	198, 450
BspACI	CCGC	8 cut(s)	93, 155, 189, 191, 215, 245, 377, 441
BspANI	GGCC	2 cut(s)	161, 440
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	3 cut(s)	8, 243, 452
BspPI	GGATC	3 cut(s)	193, 445, 458
BspQI	GCTCTTC	1 cut(s)	50
BspTNI	GGTCTC	1 cut(s)	119
BsrFI	RCCGGY	2 cut(s)	157, 345
BsrI	ACTGG	2 cut(s)	11, 451
BssAI	RCCGGY	2 cut(s)	157, 345
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	2 cut(s)	198, 450
Bst2UI	CCWGG	2 cut(s)	145, 236
Bst4CI	ACNGT	1 cut(s)	467
Bst6I	CTCTTC	1 cut(s)	50
BstC8I	GCNNGC	3 cut(s)	159, 219, 377
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	48
BstFNI	CGCG	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	2 cut(s)	201, 453
BstMAI	GTCTC	3 cut(s)	106, 119, 190
BstMBI	GATC	2 cut(s)	198, 450
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 264
BstNI	CCWGG	2 cut(s)	145, 236
BstSCI	CCNGG	4 cut(s)	143, 168, 201, 234
BstSLI	GKGCMC	1 cut(s)	377
BstUI	CGCG	1 cut(s)	191
BstV2I	GAAGAC	2 cut(s)	316, 374
BstX2I	RGATCY	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	450
BsuRI	GGCC	2 cut(s)	161, 440
BtgI	CCRYGG	1 cut(s)	189
BtrI	CACGTC	2 cut(s)	322, 372
BtsCI	GGATG	1 cut(s)	48
Cac8I	GCNNGC	3 cut(s)	159, 219, 377
CaiI	CAGNNNCTG	1 cut(s)	31
CfoI	GCGC	1 cut(s)	260
Cfr10I	RCCGGY	2 cut(s)	157, 345
Cfr13I	GGNCC	5 cut(s)	147, 232, 241, 343, 438
Cfr42I	CCGCGG	1 cut(s)	192
CsiI	ACCWGGT	1 cut(s)	234
Csp6I	GTAC	4 cut(s)	19, 271, 358, 387
CspAI	ACCGGT	1 cut(s)	345
CviJI	RGCY	7 cut(s)	28, 43, 161, 304, 433, 440, 492
CviKI_1	RGCY	7 cut(s)	28, 43, 161, 304, 433, 440, 492
CviQI	GTAC	4 cut(s)	19, 271, 358, 387
DpnI	GATC	2 cut(s)	200, 452
DpnII	GATC	2 cut(s)	198, 450
DrdI	GACNNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	350
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
EciI	GGCGGA	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	119
Eco47I	GGWCC	4 cut(s)	147, 232, 241, 343
EcoRII	CCWGG	2 cut(s)	143, 234
Esp3I	CGTCTC	2 cut(s)	106, 190
FaiI	YATR	2 cut(s)	398, 410
FauI	CCCGC	3 cut(s)	162, 252, 384
Fnu4HI	GCNGC	2 cut(s)	215, 441
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	2 cut(s)	215, 441
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	2 cut(s)	215, 441
GsaI	CCCAGC	2 cut(s)	71, 113
HaeIII	GGCC	2 cut(s)	161, 440
HapII	CCGG	5 cut(s)	158, 170, 202, 248, 346
HhaI	GCGC	1 cut(s)	260
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HinfI	GANTC	2 cut(s)	165, 251
HpaII	CCGG	5 cut(s)	158, 170, 202, 248, 346
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	3 cut(s)	21, 241, 343
Hpy188I	TCNGA	4 cut(s)	151, 198, 232, 403
Hpy188III	TCNNGA	1 cut(s)	307
Hpy8I	GTNNAC	3 cut(s)	21, 241, 343
Hpy99I	CGWCG	1 cut(s)	303
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4IV	ACGT	2 cut(s)	321, 371
HpyCH4V	TGCA	1 cut(s)	412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 264
HpySE526I	ACGT	2 cut(s)	321, 371
HspAI	GCGC	1 cut(s)	258
KroI	GCCGGC	1 cut(s)	157
KroNI	GCCGGC	1 cut(s)	159
KspI	CCGCGG	1 cut(s)	192
Kzo9I	GATC	2 cut(s)	198, 450
LguI	GCTCTTC	1 cut(s)	50
LmnI	GCTCC	1 cut(s)	39
MabI	ACCWGGT	1 cut(s)	234
MaeII	ACGT	2 cut(s)	321, 371
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	2 cut(s)	200, 452
MboI	GATC	2 cut(s)	198, 450
MboII	GAAGA	3 cut(s)	37, 316, 379
MflI	RGATCY	1 cut(s)	450
MhlI	GDGCHC	1 cut(s)	377
MluCI	AATT	2 cut(s)	310, 497
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	4 cut(s)	274, 280, 397, 423
MroNI	GCCGGC	1 cut(s)	157
MspA1I	CMGCKG	3 cut(s)	191, 217, 379
MspI	CCGG	5 cut(s)	158, 170, 202, 248, 346
MspR9I	CCNGG	4 cut(s)	145, 170, 203, 236
MvaI	CCWGG	2 cut(s)	145, 236
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	40, 264
NaeI	GCCGGC	1 cut(s)	159
NciI	CCSGG	2 cut(s)	170, 203
NdeII	GATC	2 cut(s)	198, 450
NgoMIV	GCCGGC	1 cut(s)	157
NlaIV	GGNNCC	3 cut(s)	8, 243, 452
NmuCI	GTSAC	1 cut(s)	317
PciSI	GCTCTTC	1 cut(s)	50
PdiI	GCCGGC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	165
Pfl23II	CGTACG	1 cut(s)	386
PfoI	TCCNGGA	2 cut(s)	168, 201
PinAI	ACCGGT	1 cut(s)	345
PkrI	GCNGC	2 cut(s)	216, 442
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
Psp6I	CCWGG	2 cut(s)	143, 234
PspFI	CCCAGC	2 cut(s)	67, 109
PspGI	CCWGG	2 cut(s)	143, 234
PspLI	CGTACG	1 cut(s)	386
PspN4I	GGNNCC	3 cut(s)	8, 243, 452
PspPI	GGNCC	5 cut(s)	147, 232, 241, 343, 438
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	450
RsaI	GTAC	4 cut(s)	20, 272, 359, 388
RsaNI	GTAC	4 cut(s)	19, 271, 358, 387
SacII	CCGCGG	1 cut(s)	192
SapI	GCTCTTC	1 cut(s)	50
SatI	GCNGC	2 cut(s)	215, 441
Sau3AI	GATC	2 cut(s)	198, 450
Sau96I	GGNCC	5 cut(s)	147, 232, 241, 343, 438
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	4 cut(s)	145, 170, 203, 236
SduI	GDGCHC	1 cut(s)	377
SetI	ASST	5 cut(s)	30, 45, 237, 324, 374
SexAI	ACCWGGT	1 cut(s)	234
Sfr303I	CCGCGG	1 cut(s)	192
SgrBI	CCGCGG	1 cut(s)	192
SinI	GGWCC	4 cut(s)	147, 232, 241, 343
Sse9I	AATT	2 cut(s)	310, 497
SsiI	CCGC	8 cut(s)	93, 155, 189, 191, 215, 245, 377, 441
SspI	AATATT	1 cut(s)	122
StyD4I	CCNGG	4 cut(s)	143, 168, 201, 234
TaaI	ACNGT	1 cut(s)	467
TaiI	ACGT	2 cut(s)	324, 374
TaqI	TCGA	2 cut(s)	129, 279
TasI	AATT	2 cut(s)	310, 497
TauI	GCSGC	2 cut(s)	217, 443
TfiI	GAWTC	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	317
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	3 cut(s)	37, 115, 385
TspGWI	ACGGA	1 cut(s)	172
VpaK11BI	GGWCC	4 cut(s)	147, 232, 241, 343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.