Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005870

Physical Location & Seq

Genomic Coordinates Forward (+)

19421886 .. 19422380

Gene Structure 495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1133100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGGCTTCCCAGTGGGATACACAGAGGTCTTCATCTTCCCCAACCTCTTTATCCACACTCTTTCTCTCCTCGGTTTCATCCGAAACCTCATTTTCGCTCTCTTCCACTTTCTGGGTCTCTCCGAATTTCTCGAAACCGACGTTGTTTGGCCGGAGACCCGGTCACACCTGCTGGAAAACCCATCCTCGTCGGCCCTCCTGATCCGGGAATTTCTCCCCGTCGTCAAATTCCGCGACGTAGCCGGAGACCCGCCGGAGAGCTGCGCCGTTTGTCTGTACGAGTTCGAGGTGGAGGACGAGATCAGGTGCTTGACGAATTGCAAGCACATTTTTCACCGGGCGTGTTTGGACCGTTGGATGGACCACGACCAGAAGACCTGTCCGCTTTGTAGGATGGCCTTCGTGCCCGATGAGATGAGCGACGAGTTTAATCAACGGCTCTGGGCCGCCTCCGAGATTCACCAAGATTATTACAGTGAGTACAGTTCGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046686 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

165

Amino Acids

19.16

Weight (kDa)

4.78

Isoelectric Point (pI)

56.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	87 - 131	8.7e-13	Ring finger domain
zf-RING_11	PF17123	88 - 116	3.7e-08	RING-like zinc finger
zf-RING_5	PF14634	88 - 131	1.2e-07	zinc-RING finger domain
zf-C3HC4	PF00097	88 - 130	4e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	88 - 130	2.5e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	88 - 128	8.5e-06	RING-type zinc-finger
zf-rbx1	PF12678	101 - 131	2.6e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61460
fragaria_vesca	FvH4_5g02880 FvH4_7g14900
malus_domestica	MD01G1067800.v1.1 MD06G1088300.v1.1 MD07G1133100.v1.1 MD14G1109400.v1.1
prunus_persica	Prupe.2G174100_v2.0.a1 Prupe.5G104300_v2.0.a1
pyrus_communis	pycom14g10350
rosa_chinensis	RchiOBHm_Chr1g0356851 RchiOBHm_Chr7g0197001
rosa_laevigata	RLG00000003966 RLG00000028076
rosa_multiflora	Rmu_sc0003248.1_g000003
rosa_roxburghii	Rroxscaffold_3G00258740 Rroxscaffold_4G00299260
rosa_rugosa	Rorug07G0037000
rosa_samantha	Rh1AG266300 Rh1BG233700 Rh1CG249800 Rh1DG261100 Rh7AG162000 Rh7BG163900 Rh7CG170100 Rh7DG163200
rosa_wichuraiana	Rw1G023530 Rw7G014140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	177
Acc36I	ACCTGC	1 cut(s)	177
AccB7I	CCANNNNNTGG	1 cut(s)	112
AccII	CGCG	1 cut(s)	234
AciI	CCGC	4 cut(s)	232, 251, 383, 447
AclWI	GGATC	1 cut(s)	196
AcoI	YGGCCR	1 cut(s)	149
AcsI	RAATTY	3 cut(s)	125, 209, 227
AfaI	GTAC	2 cut(s)	278, 482
AfiI	CCNNNNNNNGG	3 cut(s)	112, 205, 358
AluBI	AGCT	1 cut(s)	261
AluI	AGCT	1 cut(s)	261
Alw26I	GTCTC	3 cut(s)	122, 149, 240
AlwI	GGATC	1 cut(s)	196
AoxI	GGCC	4 cut(s)	149, 192, 396, 444
ApeKI	GCWGC	1 cut(s)	261
ApoI	RAATTY	3 cut(s)	125, 209, 227
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	4 cut(s)	193, 349, 361, 444
AsuC2I	CCSGG	3 cut(s)	160, 206, 338
AsuHPI	GGTGA	2 cut(s)	326, 452
AvaII	GGWCC	2 cut(s)	349, 361
BaeGI	GKGCMC	1 cut(s)	408
BbsI	GAAGAC	2 cut(s)	22, 380
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	3 cut(s)	190, 352, 388
BceAI	ACGGC	2 cut(s)	251, 452
BciVI	GTATCC	1 cut(s)	11
BcnI	CCSGG	3 cut(s)	160, 206, 338
BcoDI	GTCTC	3 cut(s)	122, 149, 240
BfuAI	ACCTGC	1 cut(s)	177
BfuI	GTATCC	1 cut(s)	11
BisI	GCNGC	2 cut(s)	262, 447
BlsI	GCNGC	2 cut(s)	263, 448
Bme1390I	CCNGG	3 cut(s)	160, 206, 338
Bme18I	GGWCC	2 cut(s)	349, 361
BmgT120I	GGNCC	4 cut(s)	193, 349, 361, 444
BmrFI	CCNGG	3 cut(s)	160, 206, 338
BmrI	ACTGGG	1 cut(s)	5
BmuI	ACTGGG	1 cut(s)	5
BpiI	GAAGAC	2 cut(s)	22, 380
BpuMI	CCSGG	3 cut(s)	160, 206, 338
BsaI	GGTCTC	3 cut(s)	122, 149, 240
BsaJI	CCNNGG	1 cut(s)	70
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 205, 358
Bse1I	ACTGG	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	4 cut(s)	78, 182, 363, 399
BseLI	CCNNNNNNNGG	3 cut(s)	112, 205, 358
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	1 cut(s)	59
BseSI	GKGCMC	1 cut(s)	408
BseXI	GCAGC	1 cut(s)	248
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	4 cut(s)	151, 194, 398, 446
BsiSI	CCGG	6 cut(s)	152, 160, 205, 243, 254, 337
BslI	CCNNNNNNNGG	3 cut(s)	112, 205, 358
BsmAI	GTCTC	3 cut(s)	122, 149, 240
BsnI	GGCC	4 cut(s)	151, 194, 398, 446
Bso31I	GGTCTC	3 cut(s)	122, 149, 240
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	2 cut(s)	201, 300
BspACI	CCGC	4 cut(s)	232, 251, 383, 447
BspANI	GGCC	4 cut(s)	151, 194, 398, 446
BspFNI	CGCG	1 cut(s)	234
BspMI	ACCTGC	1 cut(s)	177
BspPI	GGATC	1 cut(s)	196
BspTNI	GGTCTC	3 cut(s)	122, 149, 240
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	2 cut(s)	201, 300
Bst4CI	ACNGT	3 cut(s)	353, 476, 485
Bst6I	CTCTTC	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	323
BstF5I	GGATG	4 cut(s)	78, 182, 363, 399
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	2 cut(s)	204, 303
BstMAI	GTCTC	3 cut(s)	122, 149, 240
BstMBI	GATC	2 cut(s)	201, 300
BstSCI	CCNGG	3 cut(s)	158, 204, 336
BstSLI	GKGCMC	1 cut(s)	408
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	248
BstV2I	GAAGAC	2 cut(s)	22, 380
BsuI	GTATCC	1 cut(s)	11
BsuRI	GGCC	4 cut(s)	151, 194, 398, 446
BtsCI	GGATG	4 cut(s)	78, 182, 363, 399
BtsIMutI	CAGTG	2 cut(s)	18, 481
BveI	ACCTGC	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	323
CfoI	GCGC	1 cut(s)	266
Cfr13I	GGNCC	4 cut(s)	193, 349, 361, 444
Csp6I	GTAC	2 cut(s)	277, 481
CviJI	RGCY	8 cut(s)	6, 151, 194, 242, 261, 398, 439, 446
CviKI_1	RGCY	8 cut(s)	6, 151, 194, 242, 261, 398, 439, 446
CviQI	GTAC	2 cut(s)	277, 481
DpnI	GATC	2 cut(s)	203, 302
DpnII	GATC	2 cut(s)	201, 300
EaeI	YGGCCR	1 cut(s)	149
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco31I	GGTCTC	3 cut(s)	122, 149, 240
Eco47I	GGWCC	2 cut(s)	349, 361
FauI	CCCGC	1 cut(s)	258
Fnu4HI	GCNGC	2 cut(s)	262, 447
FokI	GGATG	4 cut(s)	65, 169, 370, 406
Fsp4HI	GCNGC	2 cut(s)	262, 447
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	2 cut(s)	262, 447
HaeIII	GGCC	4 cut(s)	151, 194, 398, 446
HapII	CCGG	6 cut(s)	152, 160, 205, 243, 254, 337
HhaI	GCGC	1 cut(s)	266
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HinfI	GANTC	1 cut(s)	457
HpaII	CCGG	6 cut(s)	152, 160, 205, 243, 254, 337
HphI	GGTGA	2 cut(s)	326, 452
Hpy188I	TCNGA	3 cut(s)	83, 124, 454
Hpy188III	TCNNGA	2 cut(s)	131, 199
Hpy99I	CGWCG	5 cut(s)	143, 193, 224, 239, 425
HpyAV	CCTTC	1 cut(s)	409
HpyCH4III	ACNGT	3 cut(s)	353, 476, 485
HpyCH4IV	ACGT	2 cut(s)	141, 237
HpyCH4V	TGCA	1 cut(s)	321
HpySE526I	ACGT	2 cut(s)	141, 237
HspAI	GCGC	1 cut(s)	264
Kzo9I	GATC	2 cut(s)	201, 300
Lsp1109I	GCAGC	1 cut(s)	248
MaeII	ACGT	2 cut(s)	141, 237
MaeIII	GTNAC	1 cut(s)	162
MalI	GATC	2 cut(s)	203, 302
MboI	GATC	2 cut(s)	201, 300
MboII	GAAGA	4 cut(s)	22, 28, 94, 385
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	4 cut(s)	125, 209, 227, 316
MmeI	TCCRAC	1 cut(s)	335
MnlI	CCTC	9 cut(s)	19, 56, 80, 98, 196, 206, 280, 286, 460
MseI	TTAA	1 cut(s)	429
MspI	CCGG	6 cut(s)	152, 160, 205, 243, 254, 337
MspR9I	CCNGG	3 cut(s)	160, 206, 338
MvnI	CGCG	1 cut(s)	234
NciI	CCSGG	3 cut(s)	160, 206, 338
NdeII	GATC	2 cut(s)	201, 300
NmuCI	GTSAC	1 cut(s)	162
PaqCI	CACCTGC	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	457
PflFI	GACNNNGTC	1 cut(s)	160
PflMI	CCANNNNNTGG	1 cut(s)	112
PfoI	TCCNGGA	1 cut(s)	204
PkrI	GCNGC	2 cut(s)	263, 448
PspPI	GGNCC	4 cut(s)	193, 349, 361, 444
PsyI	GACNNNGTC	1 cut(s)	160
RsaI	GTAC	2 cut(s)	278, 482
RsaNI	GTAC	2 cut(s)	277, 481
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	2 cut(s)	262, 447
Sau3AI	GATC	2 cut(s)	201, 300
Sau96I	GGNCC	4 cut(s)	193, 349, 361, 444
ScrFI	CCNGG	3 cut(s)	160, 206, 338
SduI	GDGCHC	1 cut(s)	408
SinI	GGWCC	2 cut(s)	349, 361
Sse9I	AATT	4 cut(s)	125, 209, 227, 316
SsiI	CCGC	4 cut(s)	232, 251, 383, 447
StyD4I	CCNGG	3 cut(s)	158, 204, 336
TaaI	ACNGT	3 cut(s)	353, 476, 485
TaiI	ACGT	2 cut(s)	144, 240
TaqI	TCGA	2 cut(s)	132, 285
TasI	AATT	4 cut(s)	125, 209, 227, 316
TatI	WGTACW	1 cut(s)	480
TauI	GCSGC	1 cut(s)	449
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	2 cut(s)	18, 481
TseFI	GTSAC	1 cut(s)	162
TseI	GCWGC	1 cut(s)	261
Tsp45I	GTSAC	1 cut(s)	162
TspDTI	ATGAA	2 cut(s)	22, 67
TspRI	CASTG	2 cut(s)	18, 481
Tth111I	GACNNNGTC	1 cut(s)	160
Van91I	CCANNNNNTGG	1 cut(s)	112
VpaK11BI	GGWCC	2 cut(s)	349, 361
XapI	RAATTY	3 cut(s)	125, 209, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.