Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005870

Physical Location & Seq

Genomic Coordinates Reverse (-)

17140466 .. 17140963

Gene Structure 498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1067800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGCTTCCCAGTGGGATACACAGAGGTCTTCGTCTTCCCCAACCTCTTCCTCCACACACTCTCTCTCCTCGGCTTCATCCGAAGCCTCATTTTCTCGCTCTTCCACTTTCTGGGTCTCTCCGAATTTCTCGAAACCGACGACATCGTTTGGCCGGAGTCCGGATCCCACCCGCCTGAAAACCCATCCGCGTCGGCCCTCCTGATCAAGGAATTTCTCCCCGTCATCAAATTCCGCGACGTCGCCGGGGACCCTGCGGAGAGTTGCGCCGTCTGCCTGTACGAGTTCGAGGTGGAGGACGAGATCAGGTGTTTGACGAATTGCAAGCACATTTTTCACCGGGCGTGTTTGGACCGTTGGATGGACCACGATCAGAAGACGTGCCCGCTTTGTAGGACGGCGTTCGTGCCCGATGAGATGAGCGATGAGTTTTATCAACGGCTCTTTGCCGCCTCTGAGATTGACCATGATTATTACAGTGAGTACAGTTCGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046686 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

166

Amino Acids

19.03

Weight (kDa)

4.58

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	88 - 132	8.8e-13	Ring finger domain
zf-RING_11	PF17123	89 - 117	3.7e-08	RING-like zinc finger
zf-RING_5	PF14634	89 - 133	1e-07	zinc-RING finger domain
zf-C3HC4	PF00097	89 - 131	4e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	89 - 131	2.5e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	89 - 129	2.3e-06	RING-type zinc-finger
zf-rbx1	PF12678	102 - 132	2.6e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61460
fragaria_vesca	FvH4_5g02880 FvH4_7g14900
malus_domestica	MD01G1067800.v1.1 MD06G1088300.v1.1 MD07G1133100.v1.1 MD14G1109400.v1.1
prunus_persica	Prupe.2G174100_v2.0.a1 Prupe.5G104300_v2.0.a1
pyrus_communis	pycom14g10350
rosa_chinensis	RchiOBHm_Chr1g0356851 RchiOBHm_Chr7g0197001
rosa_laevigata	RLG00000003966 RLG00000028076
rosa_multiflora	Rmu_sc0003248.1_g000003
rosa_roxburghii	Rroxscaffold_3G00258740 Rroxscaffold_4G00299260
rosa_rugosa	Rorug07G0037000
rosa_samantha	Rh1AG266300 Rh1BG233700 Rh1CG249800 Rh1DG261100 Rh7AG162000 Rh7BG163900 Rh7CG170100 Rh7DG163200
rosa_wichuraiana	Rw1G023530 Rw7G014140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	243
AccB7I	CCANNNNNTGG	1 cut(s)	112
AccII	CGCG	2 cut(s)	191, 237
AccIII	TCCGGA	1 cut(s)	161
AciI	CCGC	6 cut(s)	173, 189, 235, 257, 386, 450
AclWI	GGATC	2 cut(s)	159, 172
AcoI	YGGCCR	1 cut(s)	152
AcsI	RAATTY	3 cut(s)	125, 212, 230
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	2 cut(s)	281, 485
AfiI	CCNNNNNNNGG	4 cut(s)	112, 161, 208, 361
AjiI	CACGTC	1 cut(s)	381
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	2 cut(s)	159, 172
Aor13HI	TCCGGA	1 cut(s)	161
AoxI	GGCC	2 cut(s)	152, 195
ApoI	RAATTY	3 cut(s)	125, 212, 230
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	4 cut(s)	196, 250, 352, 364
AsuC2I	CCSGG	2 cut(s)	247, 341
AsuHPI	GGTGA	1 cut(s)	329
AvaII	GGWCC	3 cut(s)	250, 352, 364
BaeGI	GKGCMC	2 cut(s)	386, 411
BamHI	GGATCC	1 cut(s)	164
BbsI	GAAGAC	3 cut(s)	22, 28, 383
BccI	CCATC	2 cut(s)	193, 355
BceAI	ACGGC	3 cut(s)	254, 414, 455
BciVI	GTATCC	1 cut(s)	11
BclI	TGATCA	1 cut(s)	204
BcnI	CCSGG	2 cut(s)	247, 341
BcoDI	GTCTC	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	11
BisI	GCNGC	1 cut(s)	450
BlsI	GCNGC	1 cut(s)	451
Bme1390I	CCNGG	2 cut(s)	247, 341
Bme18I	GGWCC	3 cut(s)	250, 352, 364
BmgBI	CACGTC	1 cut(s)	381
BmgT120I	GGNCC	4 cut(s)	196, 250, 352, 364
BmiI	GGNNCC	3 cut(s)	166, 251, 252
BmrFI	CCNGG	2 cut(s)	247, 341
BmrI	ACTGGG	1 cut(s)	5
BmuI	ACTGGG	1 cut(s)	5
BpiI	GAAGAC	3 cut(s)	22, 28, 383
BpuMI	CCSGG	2 cut(s)	247, 341
BsaHI	GRCGYC	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	2 cut(s)	70, 246
BsaWI	WCCGGW	1 cut(s)	161
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 161, 208, 361
Bse1I	ACTGG	1 cut(s)	11
BseAI	TCCGGA	1 cut(s)	161
BseDI	CCNNGG	2 cut(s)	70, 246
BseGI	GGATG	3 cut(s)	78, 185, 366
BseLI	CCNNNNNNNGG	4 cut(s)	112, 161, 208, 361
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	1 cut(s)	59
BseSI	GKGCMC	2 cut(s)	386, 411
Bsh1236I	CGCG	2 cut(s)	191, 237
BshFI	GGCC	2 cut(s)	154, 197
BsiSI	CCGG	4 cut(s)	155, 162, 246, 340
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	4 cut(s)	112, 161, 208, 361
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	2 cut(s)	154, 197
Bso31I	GGTCTC	1 cut(s)	122
Bsp1286I	GDGCHC	2 cut(s)	386, 411
Bsp13I	TCCGGA	1 cut(s)	161
Bsp143I	GATC	4 cut(s)	164, 204, 303, 370
BspACI	CCGC	6 cut(s)	173, 189, 235, 257, 386, 450
BspANI	GGCC	2 cut(s)	154, 197
BspCNI	CTCAG	1 cut(s)	448
BspEI	TCCGGA	1 cut(s)	161
BspFNI	CGCG	2 cut(s)	191, 237
BspLI	GGNNCC	3 cut(s)	166, 251, 252
BspPI	GGATC	2 cut(s)	159, 172
BspQI	GCTCTTC	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	70, 246
BssMI	GATC	4 cut(s)	164, 204, 303, 370
BssNI	GRCGYC	1 cut(s)	240
Bst4CI	ACNGT	3 cut(s)	356, 479, 488
Bst6I	CTCTTC	2 cut(s)	53, 107
BstACI	GRCGYC	1 cut(s)	240
BstC8I	GCNNGC	2 cut(s)	326, 386
BstDEI	CTNAG	1 cut(s)	456
BstENI	CCTNNNNNAGG	1 cut(s)	206
BstF5I	GGATG	3 cut(s)	78, 185, 366
BstFNI	CGCG	2 cut(s)	191, 237
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	4 cut(s)	167, 207, 306, 373
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	4 cut(s)	164, 204, 303, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	273
BstSCI	CCNGG	2 cut(s)	245, 339
BstSLI	GKGCMC	2 cut(s)	386, 411
BstUI	CGCG	2 cut(s)	191, 237
BstV2I	GAAGAC	3 cut(s)	22, 28, 383
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
BsuI	GTATCC	1 cut(s)	11
BsuRI	GGCC	2 cut(s)	154, 197
BtgZI	GCGATG	1 cut(s)	438
BtrI	CACGTC	1 cut(s)	381
BtsCI	GGATG	3 cut(s)	78, 185, 366
BtsIMutI	CAGTG	2 cut(s)	18, 484
Cac8I	GCNNGC	2 cut(s)	326, 386
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	4 cut(s)	196, 250, 352, 364
CseI	GACGC	1 cut(s)	180
Csp6I	GTAC	2 cut(s)	280, 484
CviAII	CATG	1 cut(s)	467
CviJI	RGCY	6 cut(s)	6, 75, 87, 154, 197, 442
CviKI_1	RGCY	6 cut(s)	6, 75, 87, 154, 197, 442
CviQI	GTAC	2 cut(s)	280, 484
DdeI	CTNAG	1 cut(s)	456
DpnI	GATC	4 cut(s)	166, 206, 305, 372
DpnII	GATC	4 cut(s)	164, 204, 303, 370
EaeI	YGGCCR	1 cut(s)	152
Eam1104I	CTCTTC	2 cut(s)	53, 107
EarI	CTCTTC	2 cut(s)	53, 107
Eco31I	GGTCTC	1 cut(s)	122
Eco47I	GGWCC	3 cut(s)	250, 352, 364
EcoNI	CCTNNNNNAGG	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	250
FaeI	CATG	1 cut(s)	470
FaiI	YATR	1 cut(s)	468
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	1 cut(s)	466
FauI	CCCGC	2 cut(s)	180, 393
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	1 cut(s)	450
FokI	GGATG	3 cut(s)	65, 172, 373
Fsp4HI	GCNGC	1 cut(s)	450
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	1 cut(s)	450
HaeIII	GGCC	2 cut(s)	154, 197
HapII	CCGG	4 cut(s)	155, 162, 246, 340
HgaI	GACGC	1 cut(s)	180
HhaI	GCGC	1 cut(s)	269
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	1 cut(s)	470
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	4 cut(s)	155, 162, 246, 340
HphI	GGTGA	1 cut(s)	329
Hpy188I	TCNGA	4 cut(s)	83, 124, 375, 457
Hpy188III	TCNNGA	3 cut(s)	131, 162, 202
Hpy99I	CGWCG	4 cut(s)	143, 196, 242, 245
HpyCH4III	ACNGT	3 cut(s)	356, 479, 488
HpyCH4IV	ACGT	2 cut(s)	240, 380
HpyCH4V	TGCA	1 cut(s)	324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	273
HpyF3I	CTNAG	1 cut(s)	456
HpySE526I	ACGT	2 cut(s)	240, 380
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	1 cut(s)	470
HspAI	GCGC	1 cut(s)	267
KflI	GGGWCCC	1 cut(s)	250
Kpn2I	TCCGGA	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	4 cut(s)	164, 204, 303, 370
LguI	GCTCTTC	1 cut(s)	107
MaeII	ACGT	2 cut(s)	240, 380
MalI	GATC	4 cut(s)	166, 206, 305, 372
MboI	GATC	4 cut(s)	164, 204, 303, 370
MboII	GAAGA	5 cut(s)	22, 28, 40, 94, 388
MflI	RGATCY	1 cut(s)	164
MhlI	GDGCHC	2 cut(s)	386, 411
MluCI	AATT	4 cut(s)	125, 212, 230, 319
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	9 cut(s)	19, 56, 62, 80, 98, 209, 283, 289, 463
MroI	TCCGGA	1 cut(s)	161
MspI	CCGG	4 cut(s)	155, 162, 246, 340
MspR9I	CCNGG	2 cut(s)	247, 341
MvnI	CGCG	2 cut(s)	191, 237
MwoI	GCNNNNNNNGC	1 cut(s)	273
NciI	CCSGG	2 cut(s)	247, 341
NdeII	GATC	4 cut(s)	164, 204, 303, 370
NlaIII	CATG	1 cut(s)	470
NlaIV	GGNNCC	3 cut(s)	166, 251, 252
NmeAIII	GCCGAG	1 cut(s)	51
PciSI	GCTCTTC	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PflMI	CCANNNNNTGG	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	451
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PpuMI	RGGWCCY	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	250
PspN4I	GGNNCC	3 cut(s)	166, 251, 252
PspPI	GGNCC	4 cut(s)	196, 250, 352, 364
PspPPI	RGGWCCY	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	164
RsaI	GTAC	2 cut(s)	281, 485
RsaNI	GTAC	2 cut(s)	280, 484
SapI	GCTCTTC	1 cut(s)	107
SatI	GCNGC	1 cut(s)	450
Sau3AI	GATC	4 cut(s)	164, 204, 303, 370
Sau96I	GGNCC	4 cut(s)	196, 250, 352, 364
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	2 cut(s)	247, 341
SduI	GDGCHC	2 cut(s)	386, 411
SetI	ASST	6 cut(s)	30, 48, 243, 294, 311, 383
SinI	GGWCC	3 cut(s)	250, 352, 364
Sse9I	AATT	4 cut(s)	125, 212, 230, 319
SsiI	CCGC	6 cut(s)	173, 189, 235, 257, 386, 450
StyD4I	CCNGG	2 cut(s)	245, 339
TaaI	ACNGT	3 cut(s)	356, 479, 488
TaiI	ACGT	2 cut(s)	243, 383
TaqI	TCGA	2 cut(s)	132, 288
TasI	AATT	4 cut(s)	125, 212, 230, 319
TatI	WGTACW	1 cut(s)	483
TauI	GCSGC	1 cut(s)	452
TscAI	CASTG	2 cut(s)	18, 484
TspDTI	ATGAA	1 cut(s)	67
TspRI	CASTG	2 cut(s)	18, 484
Van91I	CCANNNNNTGG	1 cut(s)	112
VpaK11BI	GGWCC	3 cut(s)	250, 352, 364
XagI	CCTNNNNNAGG	1 cut(s)	206
XapI	RAATTY	3 cut(s)	125, 212, 230
ZraI	GACGTC	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.